PDB: 226707 件ウェブページステータス検索Chemie searchBIRD

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2YZG	Crystal structure of D-ALA:D-ALA Ligase from Thermus thermophilus HB8 分子名称: D-alanine--D-alanine ligase 著者 Kitamura, Y, Yokoyama, S, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2007-05-05 公開日 2007-11-06 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Crystal structure of D-ALA:D-ALA Ligase from Thermus thermophilus HB8 To be Published
2MN0	D loop of tRNA(Met) 分子名称: 5'-R(*GP*GP*AP*GP*AP*GP*(H2U)P*GP*GP*AP*AP*CP*UP*CP*C)-3' 著者 Lescrinier, E, Dyubankova, N, Herdewijn, P. 登録日 2014-03-25 公開日 2015-04-15 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Contribution of dihydrouridine in folding of the D-arm in tRNA. Org.Biomol.Chem., 13, 2015
1CWM	HUMAN CYCLOPHILIN A COMPLEXED WITH 4 MEILE CYCLOSPORIN 分子名称: CYCLOSPORIN A, PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A 著者 Mikol, V, Kallen, J, Taylor, P, Walkinshaw, M.D. 登録日 1998-05-26 公開日 1998-07-15 最終更新日 2023-08-09 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 X-Ray Structures and Analysis of 11 Cyclosporin Derivatives Complexed with Cyclophilin A. J.Mol.Biol., 283, 1998
3W4K	Crystal Structure of human DAAO in complex with coumpound 13 分子名称: 3-hydroxy-6-(2-phenylethyl)pyridazin-4(1H)-one, D-amino-acid oxidase, FLAVIN-ADENINE DINUCLEOTIDE 著者 Hondo, T, Warizaya, M, Niimi, T, Namatame, I, Yamaguchi, T, Nakanishi, K, Hamajima, T, Harada, K, Sakashita, H, Matsumoto, Y, Orita, M, Watanabe, T, Takeuchi, M. 登録日 2013-01-09 公開日 2013-05-29 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2.86 Å) 主引用文献 4-Hydroxypyridazin-3(2H)-one Derivatives as Novel d-Amino Acid Oxidase Inhibitors. J.Med.Chem., 56, 2013
1EC7	E. COLI GLUCARATE DEHYDRATASE NATIVE ENZYME 分子名称: GLUCARATE DEHYDRATASE, ISOPROPYL ALCOHOL, MAGNESIUM ION 著者 Gulick, A.M, Hubbard, B.K, Gerlt, J.A, Rayment, I. 登録日 2000-01-25 公開日 2000-05-23 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Evolution of enzymatic activities in the enolase superfamily: crystallographic and mutagenesis studies of the reaction catalyzed by D-glucarate dehydratase from Escherichia coli. Biochemistry, 39, 2000
1GAE	COMPARISON OF THE STRUCTURES OF WILD TYPE AND A N313T MUTANT OF ESCHERICHIA COLI GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASES: IMPLICATION FOR NAD BINDING AND COOPERATIVITY 分子名称: D-GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE 著者 Duee, E, Olivier-Deyris, L, Fanchon, E, Corbier, C, Branlant, G, Dideberg, O. 登録日 1995-10-24 公開日 1996-03-08 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.17 Å) 主引用文献 Comparison of the structures of wild-type and a N313T mutant of Escherichia coli glyceraldehyde 3-phosphate dehydrogenases: implication for NAD binding and cooperativity. J.Mol.Biol., 257, 1996
1EC9	E. COLI GLUCARATE DEHYDRATASE BOUND TO XYLAROHYDROXAMATE 分子名称: GLUCARATE DEHYDRATASE, ISOPROPYL ALCOHOL, MAGNESIUM ION, ... 著者 Gulick, A.M, Hubbard, B.K, Gerlt, J.A, Rayment, I. 登録日 2000-01-25 公開日 2000-05-23 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Evolution of enzymatic activities in the enolase superfamily: crystallographic and mutagenesis studies of the reaction catalyzed by D-glucarate dehydratase from Escherichia coli. Biochemistry, 39, 2000
3W4J	Crystal Structure of human DAAO in complex with coumpound 12 分子名称: 3-hydroxy-5-(2-phenylethyl)pyridin-2(1H)-one, D-amino-acid oxidase, FLAVIN-ADENINE DINUCLEOTIDE 著者 Hondo, T, Warizaya, M, Niimi, T, Namatame, I, Yamaguchi, T, Nakanishi, K, Hamajima, T, Harada, K, Sakashita, H, Matsumoto, Y, Orita, M, Watanabe, T, Takeuchi, M. 登録日 2013-01-09 公開日 2013-05-29 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2.74 Å) 主引用文献 4-Hydroxypyridazin-3(2H)-one Derivatives as Novel d-Amino Acid Oxidase Inhibitors. J.Med.Chem., 56, 2013
1CWL	HUMAN CYCLOPHILIN A COMPLEXED WITH 4 4-HYDROXY-MELEU CYCLOSPORIN 分子名称: CYCLOSPORIN A, PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A 著者 Mikol, V, Kallen, J, Taylor, P, Walkinshaw, M.D. 登録日 1998-05-26 公開日 1998-07-15 最終更新日 2023-08-09 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 X-Ray Structures and Analysis of 11 Cyclosporin Derivatives Complexed with Cyclophilin A. J.Mol.Biol., 283, 1998
3VNI	Crystal structures of D-Psicose 3-epimerase from Clostridium cellulolyticum H10 and its complex with ketohexose sugars 分子名称: MANGANESE (II) ION, Xylose isomerase domain protein TIM barrel 著者 Chan, H.C, Zhu, Y, Hu, Y, Ko, T.P, Huang, C.H, Ren, F, Chen, C.C, Guo, R.T, Sun, Y. 登録日 2012-01-16 公開日 2012-08-01 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (1.98 Å) 主引用文献 Crystal structures of D-psicose 3-epimerase from Clostridium cellulolyticum H10 and its complex with ketohexose sugars. Protein Cell, 3, 2012
1MIK	THE ROLE OF WATER MOLECULES IN THE STRUCTURE-BASED DESIGN OF (5-HYDROXYNORVALINE)-2-CYCLOSPORIN: SYNTHESIS, BIOLOGICAL ACTIVITY, AND CRYSTALLOGRAPHIC ANALYSIS WITH CYCLOPHILIN A 分子名称: CYCLOSPORIN A, PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A 著者 Mikol, V. 登録日 1995-09-20 公開日 1996-03-08 最終更新日 2024-06-05 実験手法 X-RAY DIFFRACTION (1.76 Å) 主引用文献 The Role of Water Molecules in the Structure-Based Design of (5-Hydroxynorvaline)-2-Cyclosporin: Synthesis, Biological Activity, and Crystallographic Analysis with Cyclophilin A. J.Med.Chem., 38, 1995
1W9U	Specificity and affnity of natural product cyclopentapeptide inhibitor Argadin against Aspergillus fumigatus chitinase 分子名称: ARGADIN, CHITINASE, SULFATE ION 著者 Rao, F.V, Houston, D.R, Boot, R.G, Aerts, J.M.F.G, Hodkinson, M, Adams, D.J, Shiomi, K, Omura, S, van Aalten, D.M.F. 登録日 2004-10-19 公開日 2004-11-17 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 Specificity and Affinity of Natural Product Cyclopentapeptide Inhibitors Against Aspergillus Fumigatus, Human and Bacterial Chitinases Chem.Biol., 12, 2005
2XDM	Crystal structure of a complex between Actinomadura R39 DD peptidase and a peptidoglycan mimetic boronate inhibitor 分子名称: (D-ALPHA-AMINOPIMELYLAMINO)-D-1-ETHYLBORONIC ACID, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, COBALT (II) ION, ... 著者 Rocaboy, M, Sauvage, E, Herman, R, Kerff, F, Charlier, P. 登録日 2010-05-04 公開日 2010-07-21 最終更新日 2024-10-16 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Crystal Structure of a Complex between the Actinomadura R39 Dd-Peptidase and a Peptidoglycan- Mimetic Boronate Inhibitor: Interpretation of a Transition State Analogue in Terms of Catalytic Mechanism. Biochemistry, 49, 2010
1EC8	E. COLI GLUCARATE DEHYDRATASE BOUND TO PRODUCT 2,3-DIHYDROXY-5-OXO-HEXANEDIOATE 分子名称: 2,3-DIHYDROXY-5-OXO-HEXANEDIOATE, GLUCARATE DEHYDRATASE, ISOPROPYL ALCOHOL, ... 著者 Gulick, A.M, Hubbard, B.K, Gerlt, J.A, Rayment, I. 登録日 2000-01-25 公開日 2000-05-23 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Evolution of enzymatic activities in the enolase superfamily: crystallographic and mutagenesis studies of the reaction catalyzed by D-glucarate dehydratase from Escherichia coli. Biochemistry, 39, 2000
3TQT	Structure of the D-alanine-D-alanine ligase from Coxiella burnetii 分子名称: D-alanine--D-alanine ligase 著者 Rudolph, M, Cheung, J, Franklin, M.C, Cassidy, M, Gary, E, Burshteyn, F, Love, J. 登録日 2011-09-09 公開日 2011-09-28 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.88 Å) 主引用文献 Structural genomics for drug design against the pathogen Coxiella burnetii. Proteins, 83, 2015
3U3H	X-Ray Crystallographic Analysis of D-Xylose Isomerase-Catalyzed Isomerization of (R)-Glyceraldehyde 分子名称: (2R)-propane-1,1,2,3-tetrol, (4R)-2-METHYLPENTANE-2,4-DIOL, FORMIC ACID, ... 著者 Allen, K.N, Silvaggi, N.R, Toteva, M.M, Richard, J.P. 登録日 2011-10-05 公開日 2011-10-26 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (0.97 Å) 主引用文献 Binding Energy and Catalysis by d-Xylose Isomerase: Kinetic, Product, and X-ray Crystallographic Analysis of Enzyme-Catalyzed Isomerization of (R)-Glyceraldehyde. Biochemistry, 50, 2011
4GBY	The structure of the MFS (major facilitator superfamily) proton:xylose symporter XylE bound to D-xylose 分子名称: D-xylose-proton symporter, beta-D-xylopyranose, nonyl beta-D-glucopyranoside 著者 Sun, L.F, Zeng, X, Yan, C.Y, Yan, N. 登録日 2012-07-28 公開日 2012-10-17 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.808 Å) 主引用文献 Crystal structure of a bacterial homologue of glucose transporters GLUT1-4. Nature, 490, 2012
5YC5	Crystal structure of human IgG-Fc in complex with aglycan and optimized Fc gamma receptor IIIa 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, Immunoglobulin gamma-1 heavy chain, ... 著者 Caaveiro, J.M.M, Tamura, H, Tsumoto, K, Kiyoshi, M. 登録日 2017-09-06 公開日 2018-03-21 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.71 Å) 主引用文献 Assessing the Heterogeneity of the Fc-Glycan of a Therapeutic Antibody Using an engineered Fc gamma Receptor IIIa-Immobilized Column. Sci Rep, 8, 2018
4EGQ	Crystal structure of D-alanine-D-alanine ligase B from Burkholderia pseudomallei 分子名称: D-alanine--D-alanine ligase 著者 Seattle Structural Genomics Center for Infectious Disease (SSGCID) 登録日 2012-03-31 公開日 2012-04-11 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Crystal structure of D-alanine-D-alanine ligase B from Burkholderia pseudomallei To be Published
3VSB	SUBTILISIN CARLSBERG D-NAPHTHYL-1-ACETAMIDO BORONIC ACID INHIBITOR COMPLEX 分子名称: SODIUM ION, SUBTILISIN CARLSBERG, TYPE VIII 著者 Stoll, V.S, Eger, B.T, Hynes, R.C, Martichonok, V, Jones, J.B, Pai, E.F. 登録日 1997-09-25 公開日 1998-03-25 最終更新日 2023-08-09 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Differences in binding modes of enantiomers of 1-acetamido boronic acid based protease inhibitors: crystal structures of gamma-chymotrypsin and subtilisin Carlsberg complexes. Biochemistry, 37, 1998
2YZN	Crystal structure of D-alanine:D-Alanine Ligase with AMPPNP from Thermus thermophilus HB8. 分子名称: D-alanine-D-alanine ligase, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER 著者 Kitamuta, Y, Yokoyama, S, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2007-05-06 公開日 2007-11-06 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Crystal structure of D-alanine:D-Alanine Ligase with AMPPNP from Thermus thermophilus HB8 To be Published
2GBP	SUGAR AND SIGNAL-TRANSDUCER BINDING SITES OF THE ESCHERICHIA COLI GALACTOSE CHEMORECEPTOR PROTEIN 分子名称: CALCIUM ION, D-GALACTOSE/D-GLUCOSE BINDING PROTEIN, beta-D-glucopyranose 著者 Vyas, N.K, Vyas, M.N, Quiocho, F.A. 登録日 1989-02-23 公開日 1990-07-15 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Sugar and signal-transducer binding sites of the Escherichia coli galactose chemoreceptor protein. Science, 242, 1988
4EGJ	Crystal structure of D-alanine-D-alanine ligase from Burkholderia xenovorans 分子名称: D-alanine--D-alanine ligase 著者 SSGCID, Seattle Structural Genomics Center for Infectious Disease (SSGCID) 登録日 2012-03-31 公開日 2012-07-18 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Combining functional and structural genomics to sample the essential Burkholderia structome. Plos One, 8, 2013
4GBZ	The structure of the MFS (major facilitator superfamily) proton:xylose symporter XylE bound to D-glucose 分子名称: D-xylose-proton symporter, beta-D-glucopyranose, nonyl beta-D-glucopyranoside 著者 Sun, L.F, Zeng, X, Yan, C.Y, Yan, N. 登録日 2012-07-28 公開日 2012-10-17 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.894 Å) 主引用文献 Crystal structure of a bacterial homologue of glucose transporters GLUT1-4. Nature, 490, 2012
2P9G	Crystal structure of serine bound G336V,G337V double mutant of E.coli phosphoglycerate dehydrogenase 分子名称: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, D-3-phosphoglycerate dehydrogenase, SERINE 著者 Dey, S, Sacchettini, J.C. 登録日 2007-03-25 公開日 2007-04-24 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 The Effect of Hinge Mutations on Effector Binding and Domain Rotation in Escherichia coli D-3-Phosphoglycerate Dehydrogenase. J.Biol.Chem., 282, 2007

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