PDB: 45744 件ウェブページステータス検索Chemie searchBIRD

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6RGJ	Photorhabdus asymbiotica lectin PHL in complex with D-glucose 分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, Lectin PHL, ... 著者 Houser, J, Fujdiarova, E, Jancarikova, G, Wimmerova, M. 登録日 2019-04-16 公開日 2020-07-01 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Heptabladed beta-propeller lectins PLL2 and PHL from Photorhabdus spp. recognize O-methylated sugars and influence the host immune system. Febs J., 288, 2021
8D4O	Crystal Structure of the Neutrophil Serine Protease Inhibitor Eap1 from S. aureus 分子名称: Extracellular Adherence Protein, SODIUM ION 著者 Gido, C.D, Geisbrecht, B.V. 登録日 2022-06-02 公開日 2022-12-21 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (1.45 Å) 主引用文献 Characterization of two distinct neutrophil serine protease-binding modes within a Staphylococcus aureus innate immune evasion protein family. J.Biol.Chem., 299, 2023
5SVL	Crystal structure of the ATP-gated human P2X3 ion channel in the ATP-bound, closed (desensitized) state 分子名称: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, ... 著者 Mansoor, S.E, Lu, W, Oosterheert, W, Shekhar, M, Tajkhorshid, E, Gouaux, E. 登録日 2016-08-06 公開日 2016-10-05 最終更新日 2024-10-09 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 X-ray structures define human P2X3 receptor gating cycle and antagonist action. Nature, 538, 2016
5SVS	Anomalous Mn2+ signal reveals a divalent cation-binding site in the head domain of the ATP-gated human P2X3 ion channel 分子名称: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, MAGNESIUM ION, ... 著者 Mansoor, S.E, Lu, W, Oosterheert, W, Shekhar, M, Tajkhorshid, E, Gouaux, E. 登録日 2016-08-07 公開日 2016-09-28 最終更新日 2020-07-29 実験手法 X-RAY DIFFRACTION (4.025 Å) 主引用文献 X-ray structures define human P2X3 receptor gating cycle and antagonist action. Nature, 538, 2016
7CUF	Crystal Structure of Urate Oxidase from Bacillus sp. TB-90 in the absence from Chloride Anion at 1.44 A resolution 分子名称: 2-METHOXYETHANOL, 8-AZAXANTHINE, OXYGEN MOLECULE, ... 著者 Hibi, T, Itoh, T. 登録日 2020-08-22 公開日 2020-11-25 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (1.46 Å) 主引用文献 Identification of quasi-stable water molecules near the Thr73-Lys13 catalytic diad of Bacillus sp. TB-90 urate oxidase by X-ray crystallography with controlled humidity. J.Biochem., 169, 2021
7CN7	T4 phage spackle protein gp61.3 complex with lysozyme domain of gp5 tail lysozyme 分子名称: 1,2-ETHANEDIOL, 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL, Baseplate central spike complex protein gp5, ... 著者 Kanamaru, S, Leiman, P.G. 登録日 2020-07-30 公開日 2020-10-14 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (1.15 Å) 主引用文献 Structure and Function of the T4 Spackle Protein Gp61.3. Viruses, 12, 2020
5T4F	Human DPP4 in complex with ligand 34p 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 4-({2-[(3R)-3-aminopiperidin-1-yl]-3-(but-2-yn-1-yl)-4-oxo-3,4-dihydro-5H-imidazo[2,1-b]purin-5-yl}methyl)benzonitrile, ... 著者 Scapin, G. 登録日 2016-08-29 公開日 2016-10-05 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Scaffold-hopping from xanthines to tricyclic guanines: A case study of dipeptidyl peptidase 4 (DPP4) inhibitors. Bioorg.Med.Chem., 24, 2016
8DJZ	Crystal structure of RPA3624, a beta-propeller lactonase from Rhodopseudomonas palustris, with active-site bound product 分子名称: (4R)-4-hydroxypentanoic acid, CALCIUM ION, Gluconolactonase, ... 著者 Bingman, C.A, Hall, B.W, Smith, R.W, Fox, B.G, Donohue, T.J. 登録日 2022-07-01 公開日 2023-01-11 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.55 Å) 主引用文献 A broad specificity beta-propeller enzyme from Rhodopseudomonas palustris that hydrolyzes many lactones including gamma-valerolactone. J.Biol.Chem., 299, 2022
7CW1	Crystal structure of a biodegradable plastic-degrading cutinase-like enzyme from the phyllosphere yeast, Pseudozyma antarctica, solved by getting the phase from anomalous scattering of uncovalently coordinated arsenic (cacodylate). 分子名称: CACODYLIC ACID, Cutinase-like enzyme, SODIUM ION 著者 Suzuki, K. 登録日 2020-08-27 公開日 2020-09-16 最終更新日 2024-10-16 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Crystal structure of a biodegradable plastic-degrading cutinase-like enzyme from the phyllosphere yeast, Pseudozyma antarctica, solved by getting the phase from anomalous scattering of uncovalently coordinated arsenic (cacodylate). To Be Published
8DJF	Crystal structure of RPA3624, a beta-propeller lactonase from Rhodopseudomonas palustris, with active-site bound tetrahedral intermediate 分子名称: (5S)-5-methyloxolane-2,2-diol, CALCIUM ION, Gluconolactonase, ... 著者 Bingman, C.A, Hall, B.W, Smith, R.W, Fox, B.G, Donohue, T.J. 登録日 2022-06-30 公開日 2023-01-11 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.55 Å) 主引用文献 A broad specificity beta-propeller enzyme from Rhodopseudomonas palustris that hydrolyzes many lactones including gamma-valerolactone. J.Biol.Chem., 299, 2022
6RU1	Crystal Structure of Glucuronoyl Esterase from Cerrena unicolor inactive S270A variant in complex with the aldouronic acid Um4X 分子名称: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, 4-O-methyl-alpha-D-glucopyranuronic acid-(1-2)-beta-D-xylopyranose-(1-4)-beta-D-xylopyranose, ... 著者 Ernst, H.A, Mosbech, C, Langkilde, A, Westh, P, Meyer, A, Agger, J.W, Larsen, S. 登録日 2019-05-27 公開日 2020-03-18 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.39 Å) 主引用文献 The structural basis of fungal glucuronoyl esterase activity on natural substrates. Nat Commun, 11, 2020
2DIE	Alkaline alpha-amylase AmyK from Bacillus sp. KSM-1378 分子名称: CALCIUM ION, SODIUM ION, amylase 著者 Shirai, T, Igarashi, K, Ozawa, T, Hagihara, H, Kobayashi, T, Ozaki, K, Ito, S. 登録日 2006-03-29 公開日 2007-02-13 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Ancestral sequence evolutionary trace and crystal structure analyses of alkaline alpha-amylase from Bacillus sp. KSM-1378 to clarify the alkaline adaptation process of proteins Proteins, 66, 2007
8DJR	Cytosolic ascorbate peroxidase from Sorghum bicolor 分子名称: L-ascorbate peroxidase, PROTOPORPHYRIN IX CONTAINING FE, SODIUM ION, ... 著者 Zhang, B, Kang, C. 登録日 2022-07-01 公開日 2023-01-18 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.46 Å) 主引用文献 A sorghum ascorbate peroxidase with four binding sites has activity against ascorbate and phenylpropanoids. Plant Physiol., 192, 2023
2DEV	Crystal structure of tt0972 protein from Thermus Thermophilus with Cs(+) ions 分子名称: CESIUM ION, CHLORIDE ION, SODIUM ION, ... 著者 Inagaki, E, Nakano, N, Shinkai, A, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2006-02-17 公開日 2007-05-01 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2.45 Å) 主引用文献 Crystal structure of tt0972 protein from Thermus Thermophilus To be Published
7CC4	A biodegradable plastic-degrading cutinase-like enzyme from the phyllosphere yeast Pseudozyma antarctica 分子名称: Cutinase-like enzyme, SODIUM ION 著者 Suzuki, K, Watanabe, T, Kitamoto, H. 登録日 2020-06-16 公開日 2020-07-15 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 A biodegradable plastic-degrading cutinase-like enzyme from the phyllosphere yeast Pseudozyma antarctica To Be Published
8DJX	Cytosolic ascorbate peroxidase from Sorghum bicolor - Compound II 分子名称: L-ascorbate peroxidase, PROTOPORPHYRIN IX CONTAINING FE, SODIUM ION, ... 著者 Zhang, B, Kang, C. 登録日 2022-07-01 公開日 2023-01-18 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.34 Å) 主引用文献 A sorghum ascorbate peroxidase with four binding sites has activity against ascorbate and phenylpropanoids. Plant Physiol., 192, 2023
4XKW	Tailspike protein mutant D339N of E. coli bacteriophage HK620 in complex with pentasaccharide 分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, FORMIC ACID, SODIUM ION, ... 著者 Gohlke, U, Broeker, N.K, Heinemann, U, Seckler, R, Barbirz, S. 登録日 2015-01-12 公開日 2016-01-20 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (1.45 Å) 主引用文献 Enthalpic cost of water removal from a hydrophobic glucose binding cavity on HK620 tailspike protein. to be published
4XLA	Tailspike protein mutant D339A of E. coli bacteriophage HK620 IN COMPLEX WITH PENTASACCHARIDE 分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, FORMIC ACID, SODIUM ION, ... 著者 Gohlke, U, Broeker, N.K, Heinemann, U, Seckler, R, Barbirz, S. 登録日 2015-01-13 公開日 2016-01-20 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.47 Å) 主引用文献 Enthalpic cost of water removal from a hydrophobic glucose binding cavity on HK620 tailspike protein. to be published
8DJS	Cytosolic ascorbate peroxidase from Sorghum bicolor - one ascorbate complex 分子名称: ASCORBIC ACID, GLYCEROL, L-ascorbate peroxidase, ... 著者 Zhang, B, Kang, C. 登録日 2022-07-01 公開日 2023-01-18 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.19 Å) 主引用文献 A sorghum ascorbate peroxidase with four binding sites has activity against ascorbate and phenylpropanoids. Plant Physiol., 192, 2023
4XM3	Tailspike protein mutant E372A of E. coli bacteriophage HK620 in complex with pentasaccharide 分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, FORMIC ACID, SODIUM ION, ... 著者 Gohlke, U, Broeker, N.K, Heinemann, U, Seckler, R, Barbirz, S. 登録日 2015-01-14 公開日 2016-01-27 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (1.27 Å) 主引用文献 Enthalpic cost of water removal from a hydrophobic glucose binding cavity on HK620 tailspike protein. to be published
8DJU	Cytosolic ascorbate peroxidase from Sorghum bicolor - bicyclic dehydroascorbic acid complex 分子名称: (3aS,6S,6aR)-3,3,3a,6-tetrahydroxytetrahydrofuro[3,2-b]furan-2(3H)-one (non-preferred name), L-ascorbate peroxidase, PROTOPORPHYRIN IX CONTAINING FE, ... 著者 Zhang, B, Kang, C. 登録日 2022-07-01 公開日 2023-01-18 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 A sorghum ascorbate peroxidase with four binding sites has activity against ascorbate and phenylpropanoids. Plant Physiol., 192, 2023
8DJW	Cytosolic ascorbate peroxidase from Sorghum bicolor - hydroperoxo complex 分子名称: L-ascorbate peroxidase, OXYGEN MOLECULE, PROTOPORPHYRIN IX CONTAINING FE, ... 著者 Zhang, B, Kang, C. 登録日 2022-07-01 公開日 2023-01-18 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 A sorghum ascorbate peroxidase with four binding sites has activity against ascorbate and phenylpropanoids. Plant Physiol., 192, 2023
8DJT	Cytosolic ascorbate peroxidase from Sorghum bicolor - four ascorbates complex 分子名称: ASCORBIC ACID, GLYCEROL, L-ascorbate peroxidase, ... 著者 Zhang, B, Kang, C. 登録日 2022-07-01 公開日 2023-01-18 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.16 Å) 主引用文献 A sorghum ascorbate peroxidase with four binding sites has activity against ascorbate and phenylpropanoids. Plant Physiol., 192, 2023
8CX9	Structure of the SARS-COV2 PLpro (C111S) in complex with a dimeric Ubv that inhibits activity by an unusual allosteric mechanism 分子名称: BROMIDE ION, CHLORIDE ION, Papain-like protease nsp3, ... 著者 Singer, A.U, Slater, C.L, Patel, A, Russel, R, Mark, B.L, Sidhu, S.S. 登録日 2022-05-20 公開日 2023-01-25 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (3.5 Å) 主引用文献 Ubiquitin variants potently inhibit SARS-CoV-2 PLpro and viral replication via a novel site distal to the protease active site. Plos Pathog., 18, 2022
6RGW	Photorhabdus asymbiotica lectin PHL in complex with O-methylated PGL-1-derived disaccharide 分子名称: 1,2-ETHANEDIOL, 3,6-O-dimethyl-D-glucose, 4-(2-azanylethoxy)phenol, ... 著者 Houser, J, Fujdiarova, E, Jancarikova, G, Wimmerova, M. 登録日 2019-04-17 公開日 2020-07-01 最終更新日 2024-10-16 実験手法 X-RAY DIFFRACTION (1.75 Å) 主引用文献 Heptabladed beta-propeller lectins PLL2 and PHL from Photorhabdus spp. recognize O-methylated sugars and influence the host immune system. Febs J., 288, 2021

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