PDB: 45953 件ウェブページステータス検索Chemie searchBIRD

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5J3N	C-terminal domain of EcoR124I HsdR subunit fused with the pH-sensitive GFP variant ratiometric pHluorin 分子名称: Green fluorescent protein,HsdR 著者 Grinkevich, P, Iermak, I, Luedtke, N, Mesters, J.R, Ettrich, R, Ludwig, J. 登録日 2016-03-31 公開日 2017-04-12 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.45 Å) 主引用文献 Crystal structure of a novel domain of the motor subunit of the Type I restriction enzyme EcoR124 involved in complex assembly and DNA binding. J. Biol. Chem., 293, 2018
7QVQ	Human telomeric DNA G-quadruplex of a gold(III) complex containing the 2,4,6-tris (2-pyrimidyl)-1,3,5-triazine ligand 分子名称: 2,4,6-tris (2-pyrimidyl)-1,3,5-triazine gold(III) complex, POTASSIUM ION, human telomeric DNA 著者 Bazzicalupi, C, Ryde, U, Gratteri, P, Bergmann, J. 登録日 2022-01-23 公開日 2022-12-28 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Probing the Efficiency of 13-Pyridylalkyl Berberine Derivatives to Human Telomeric G-Quadruplexes Binding: Spectroscopic, Solid State and In Silico Analysis. Int J Mol Sci, 23, 2022
4WVS	Crystal structure of XIAP-BIR2 domain complexed with (S)-3-(4-methoxyphenyl)-2-((S)-2-((S)-1-((S)-2-((S)-2-(methylamino)propanamido)pent-4-ynoyl)pyrrolidine-2-carboxamido)-3-phenylpropanamido)propanoic acid 分子名称: 3,11-DIFLUORO-6,8,13-TRIMETHYL-8H-QUINO[4,3,2-KL]ACRIDIN-13-IUM, E3 ubiquitin-protein ligase XIAP, GLYCEROL, ... 著者 Pokross, M.E. 登録日 2014-11-07 公開日 2015-05-06 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.09 Å) 主引用文献 The Discovery of Macrocyclic XIAP Antagonists from a DNA-Programmed Chemistry Library, and Their Optimization To Give Lead Compounds with in Vivo Antitumor Activity. J.Med.Chem., 58, 2015
2Y7C	Atomic model of the Ocr-bound methylase complex from the Type I restriction-modification enzyme EcoKI (M2S1). Based on fitting into EM map 1534. 分子名称: GENE 0.3 PROTEIN, TYPE I RESTRICTION ENZYME ECOKI M PROTEIN, TYPE-1 RESTRICTION ENZYME ECOKI SPECIFICITY PROTEIN 著者 Kennaway, C.K, Obarska-Kosinska, A, White, J.H, Tuszynska, I, Cooper, L.P, Bujnicki, J.M, Trinick, J, Dryden, D.T.F. 登録日 2011-01-31 公開日 2011-02-09 最終更新日 2024-05-08 実験手法 ELECTRON MICROSCOPY (18 Å) 主引用文献 The Structure of M.Ecoki Type I DNA Methyltransferase with a DNA Mimic Antirestriction Protein. Nucleic Acids Res., 37, 2009
3JXB	Crystal structure of the P22 c2 repressor protein in complex with synthetic operator 9C 分子名称: 5'-D(*CP*AP*TP*TP*TP*AP*AP*GP*AP*CP*GP*TP*CP*TP*TP*AP*AP*AP*TP*A)-3', 5'-D(*TP*AP*TP*TP*TP*AP*AP*GP*AP*CP*GP*TP*CP*TP*TP*AP*AP*AP*TP*G)-3', Repressor protein C2 著者 Watkins, D, Koudelka, G.B, Williams, L.D. 登録日 2009-09-18 公開日 2010-01-19 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (1.67 Å) 主引用文献 Sequence Recognition of DNA by Protein-Induced Conformational Transitions J.Mol.Biol., 396, 2010
3JXC	Crystal structure of the P22 c2 repressor protein in complex with synthetic operator 9T in the presence of Tl+ 分子名称: 5'-D(*CP*AP*TP*TP*TP*AP*AP*GP*AP*TP*AP*TP*CP*TP*TP*AP*AP*AP*TP*G)-3', Repressor protein C2, THALLIUM (I) ION 著者 Watkins, D, Koudelka, G.B, Williams, L.D. 登録日 2009-09-18 公開日 2010-01-19 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Sequence Recognition of DNA by Protein-Induced Conformational Transitions. J.Mol.Biol., 396, 2010
3SP4	Crystal structure of aprataxin ortholog Hnt3 from Schizosaccharomyces pombe 分子名称: Aprataxin-like protein, SULFATE ION, ZINC ION 著者 Gong, Y, Zhu, D, Ding, J, Dou, C, Ren, X, Jiang, T, Wang, D. 登録日 2011-07-01 公開日 2011-10-12 最終更新日 2013-07-03 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Crystal structures of aprataxin ortholog Hnt3 reveal the mechanism for reversal of 5'-adenylated DNA Nat.Struct.Mol.Biol., 18, 2011
7ZG5	The crystal structure of Salmonella TacAT3-DNA complex 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, Acetyltransferase, BARIUM ION, ... 著者 Grabe, G.J, Morgan, R.M.L, Helaine, S. 登録日 2022-04-01 公開日 2023-10-11 最終更新日 2024-04-10 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Molecular stripping underpins derepression of a toxin-antitoxin system. Nat.Struct.Mol.Biol., 2024
4WVU	CRYSTAL STRUCTURE OF XIAP-BIR2 DOMAIN COMPLEXED WITH LIGAND BOUND 分子名称: 3,11-DIFLUORO-6,8,13-TRIMETHYL-8H-QUINO[4,3,2-KL]ACRIDIN-13-IUM, E3 ubiquitin-protein ligase XIAP, GLYCEROL, ... 著者 Pokross, M.E. 登録日 2014-11-07 公開日 2015-03-04 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.02 Å) 主引用文献 The Discovery of Macrocyclic XIAP Antagonists from a DNA-Programmed Chemistry Library, and Their Optimization To Give Lead Compounds with in Vivo Antitumor Activity. J.Med.Chem., 58, 2015
8GJ9	RAD51C N-terminal domain 分子名称: RAD51C, ZINC ION 著者 Arvai, A.S, Tainer, J.A, Williams, G. 登録日 2023-03-15 公開日 2023-08-16 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 RAD51C-XRCC3 structure and cancer patient mutations define DNA replication roles. Nat Commun, 14, 2023
4WVT	Crystal structure of XIAP-BIR2 domain complexed with ligand bound 分子名称: 3,11-DIFLUORO-6,8,13-TRIMETHYL-8H-QUINO[4,3,2-KL]ACRIDIN-13-IUM, E3 ubiquitin-protein ligase XIAP, ZINC ION 著者 Pokross, M.E. 登録日 2014-11-07 公開日 2015-03-04 最終更新日 2015-04-08 実験手法 X-RAY DIFFRACTION (1.96 Å) 主引用文献 The Discovery of Macrocyclic XIAP Antagonists from a DNA-Programmed Chemistry Library, and Their Optimization To Give Lead Compounds with in Vivo Antitumor Activity. J.Med.Chem., 58, 2015
5K81	Crystal Structure of a Primate APOBEC3G N-Terminal Domain 分子名称: Apolipoprotein B mRNA editing enzyme, catalytic peptide-like 3G,Apolipoprotein B mRNA editing enzyme, catalytic peptide-like 3G, ... 著者 Xiao, X, Li, S.-X, Yang, H, Chen, X.S. 登録日 2016-05-27 公開日 2016-08-10 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.006 Å) 主引用文献 Crystal structures of APOBEC3G N-domain alone and its complex with DNA. Nat Commun, 7, 2016
7P9J	Prim-Pol Domain of CRISPR-associated Prim-Pol (CAPP) from Marinitoga sp. 1137 - Primer Initiation Complex 分子名称: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]adenosine, COBALT (II) ION, GUANOSINE-5'-TRIPHOSPHATE, ... 著者 Li, A.W.H, Doherty, A.J. 登録日 2021-07-27 公開日 2022-05-04 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Molecular basis for the initiation of DNA primer synthesis. Nature, 605, 2022
4QQY	Crystal structure of T. fusca Cas3-ADP 分子名称: ADENOSINE-5'-DIPHOSPHATE, CRISPR-associated helicase, Cas3 family, ... 著者 Ke, A, Huo, Y, Nam, K.H. 登録日 2014-06-30 公開日 2014-08-27 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (3.12 Å) 主引用文献 Structures of CRISPR Cas3 offer mechanistic insights into Cascade-activated DNA unwinding and degradation. Nat.Struct.Mol.Biol., 21, 2014
3S5U	Crystal structure of CRISPR associated protein 分子名称: CALCIUM ION, Putative uncharacterized protein 著者 Ke, A, Nam, K.H. 登録日 2011-05-23 公開日 2011-06-22 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Crystal structure of clustered regularly interspaced short palindromic repeats (CRISPR)-associated Csn2 protein revealed Ca2+-dependent double-stranded DNA binding activity. J. Biol. Chem., 286, 2011
3EEO	M. HhaI co-crystallized with synthetic dsDNA containing a propane diol in place of the deoxycytidine residue targeted for methylation. 分子名称: 5'-D(P*DCP*DCP*DAP*DTP*DGP*DCP*DGP*DCP*DTP*DGP*DAP*DC)-3', 5'-D(P*DGP*DTP*DCP*DAP*DGP*(PDI)P*DGP*DCP*DAP*DTP*DGP*DG)-3', Modification methylase HhaI, ... 著者 Porta, J.C, Christman, J.K, Borgstahl, G.E.O. 登録日 2008-09-05 公開日 2010-03-02 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.94 Å) 主引用文献 M. HhaI co-crystallized with synthetic dsDNA containing a propane diol in place of the deoxycytidine residue targeted for methylation. To be Published
2OBZ	Crystal structure of the The brominated Z-DNA duplex d(CGCG[BrU]G) 分子名称: 5'-D(*CP*GP*CP*GP*(BRU)P*G)-3' 著者 Schiltz, M, Sanishvili, R. 登録日 2006-12-20 公開日 2007-12-25 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (1.1 Å) 主引用文献 Polarisation-dependence of anomalous scattering in brominated DNA and RNA molecules, and importance of crystal orientation in SAD and MAD phasing To be Published
2B8A	High Resolution Structure of the HDGF PWWP Domain 分子名称: Hepatoma-derived growth factor 著者 Lukasik, S.M, Cierpicki, T, Borloz, M, Grembecka, J, Everett, A, Bushweller, J.H. 登録日 2005-10-06 公開日 2005-12-06 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 High resolution structure of the HDGF PWWP domain: a potential DNA binding domain. Protein Sci., 15, 2006
3JXD	Crystal structure of the P22 c2 repressor protein in complex with synthetic operator 9C in the presence of Rb+ 分子名称: 5'-D(*CP*AP*TP*TP*TP*AP*AP*GP*AP*CP*GP*TP*CP*TP*TP*AP*AP*AP*TP*G)-3', RUBIDIUM ION, Repressor protein C2 著者 Watkins, D, Koudelka, G.B, Williams, L.D. 登録日 2009-09-18 公開日 2010-01-19 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Sequence Recognition of DNA by Protein-Induced Conformational Transitions. J.Mol.Biol., 396, 2010
5WQE	Crystal structure of Alicyclobacillus acidoterrestris C2c1 in complex with single-guide RNA at 3.1 Angstrom resolution 分子名称: CRISPR-associated endonuclease C2c1, RNA (60-MER) 著者 Liu, L, Wang, Y.L. 登録日 2016-11-26 公開日 2017-01-25 最終更新日 2017-10-18 実験手法 X-RAY DIFFRACTION (3.126 Å) 主引用文献 C2c1-sgRNA Complex Structure Reveals RNA-Guided DNA Cleavage Mechanism Mol. Cell, 65, 2017
8K0S	The Anoxybacillus pushchinoensis ORF-less Group IIC Intron HYER1 with 10-nt TRS at symmetric apo state 分子名称: MAGNESIUM ION, RNA (543-MER) 著者 Zhu, H.Z, Liu, J.J.G. 登録日 2023-07-10 公開日 2024-05-01 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.41 Å) 主引用文献 Hydrolytic endonucleolytic ribozyme (HYER) is programmable for sequence-specific DNA cleavage. Science, 383, 2024
8K15	The Streptococcus azizii ORF-less Group IIC intron HYER2 at apo state 分子名称: MAGNESIUM ION, RNA (470-MER) 著者 Zhu, H.Z, Liu, J.J.G. 登録日 2023-07-10 公開日 2024-05-15 実験手法 ELECTRON MICROSCOPY (2.58 Å) 主引用文献 Hydrolytic endonucleolytic ribozyme (HYER) is programmable for sequence-specific DNA cleavage. Science, 383, 2024
2PQA	Crystal Structure of Full-length Human RPA 14/32 Heterodimer 分子名称: Replication protein A 14 kDa subunit, Replication protein A 32 kDa subunit 著者 Deng, X, Borgstahl, G.E. 登録日 2007-05-01 公開日 2007-11-13 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Structure of the full-length human RPA14/32 complex gives insights into the mechanism of DNA binding and complex formation. J.Mol.Biol., 374, 2007
5K82	Crystal Structure of a Primate APOBEC3G N-Terminal Domain 分子名称: Apolipoprotein B mRNA editing enzyme, catalytic peptide-like 3G,Apolipoprotein B mRNA editing enzyme, catalytic peptide-like 3G, ... 著者 Xiao, X, Li, S.-X, Yang, H, Chen, X.S. 登録日 2016-05-27 公開日 2016-08-10 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.913 Å) 主引用文献 Crystal structures of APOBEC3G N-domain alone and its complex with DNA. Nat Commun, 7, 2016
8K0P	The Anoxybacillus pushchinoensis ORF-less Group IIC Intron HYER1 at symmetric apo state 分子名称: MAGNESIUM ION, RNA (542-MER) 著者 Zhu, H.Z, Liu, J.J.G. 登録日 2023-07-10 公開日 2024-05-15 実験手法 ELECTRON MICROSCOPY (2.99 Å) 主引用文献 Hydrolytic endonucleolytic ribozyme (HYER) is programmable for sequence-specific DNA cleavage. Science, 383, 2024

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