Loading
PDBj
メニューPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

5M6H
DownloadVisualize
BU of 5m6h by Molmil
Small Molecule inhibitors of IAP
分子名称: 1-[3,3-dimethyl-6-(phenylmethyl)-2~{H}-pyrrolo[3,2-b]pyridin-1-yl]-2-[(2~{R},5~{R})-5-methyl-2-morpholin-4-ylcarbonyl-piperazin-4-ium-1-yl]ethanone, E3 ubiquitin-protein ligase XIAP, SODIUM ION, ...
著者Williams, P.A.
登録日2016-10-25
公開日2017-05-24
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Discovery of a Potent Nonpeptidomimetic, Small-Molecule Antagonist of Cellular Inhibitor of Apoptosis Protein 1 (cIAP1) and X-Linked Inhibitor of Apoptosis Protein (XIAP).
J. Med. Chem., 60, 2017
6I49
DownloadVisualize
BU of 6i49 by Molmil
Structure of P. aeruginosa LpxC with compound 17a: (2R)-N-Hydroxy-2-methyl-2-(methylsulfonyl)-4(6((4(morpholinomethyl)phenyl)ethynyl)-3-oxo-1H-pyrrolo[1,2-c]imidazol-2(3H)yl)butanamide
分子名称: (2~{R})-2-methyl-2-methylsulfonyl-4-[6-[2-[4-(morpholin-4-ylmethyl)phenyl]ethynyl]-3-oxidanylidene-1~{H}-pyrrolo[1,2-c]imidazol-2-yl]-~{N}-oxidanyl-butanamide, UDP-3-O-acyl-N-acetylglucosamine deacetylase, ZINC ION
著者Surivet, J.-P, Panchaud, P, Specklin, J.-L, Diethelm, S, Blumstein, A.-C, Gauvin, J.-C, Jacob, L, Masse, F, Mathieu, G, Mirre, A, Schmitt, C, Enderlin-Paput, M, Lange, R, Bur, D, Tidten-Luksch, N, Gnerre, C, Seeland, S, Hermann, C, Locher, H.H, Seiler, P, Mac Sweeney, A, Hubschwerlen, C, Ritz, D, Rueedi, G.
登録日2018-11-09
公開日2019-12-18
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.94 Å)
主引用文献Discovery of Novel Inhibitors of LpxC Displaying Potent in Vitro Activity against Gram-Negative Bacteria.
J.Med.Chem., 63, 2020
7BZ4
DownloadVisualize
BU of 7bz4 by Molmil
The mutant variant of PNGM-1. H279 was substituted for alanine to study metal coordination.
分子名称: Metallo-beta-lactamase PNGM-1, ZINC ION
著者Park, Y.S, Kang, L.W, Lee, J.H.
登録日2020-04-26
公開日2021-04-28
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2.16 Å)
主引用文献Structural Study of Metal Binding and Coordination in Ancient Metallo-beta-Lactamase PNGM-1 Variants.
Int J Mol Sci, 21, 2020
6I6C
DownloadVisualize
BU of 6i6c by Molmil
SEPIAPTERIN REDUCTASE IN COMPLEX WITH COMPOUND 2
分子名称: (1~{R},2~{S},4~{S})-~{N}-(3-chloranyl-4-cyano-phenyl)sulfonylbicyclo[2.2.1]heptane-2-carboxamide, 1,2-ETHANEDIOL, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
著者Alen, J, Schade, M, Wagener, M, Blaesse, M.
登録日2018-11-15
公開日2019-07-10
最終更新日2024-05-15
実験手法X-RAY DIFFRACTION (1.72 Å)
主引用文献Fragment-Based Discovery of Novel Potent Sepiapterin Reductase Inhibitors.
J.Med.Chem., 62, 2019
6I17
DownloadVisualize
BU of 6i17 by Molmil
CRYSTAL STRUCTURE OF FASCIN IN COMPLEX WITH COMPOUND 24
分子名称: 1,2-ETHANEDIOL, 2-[(3,4-dichlorophenyl)methyl]-~{N}-(1-methylpyrazol-4-yl)-1-oxidanylidene-6-piperidin-4-yl-2,7-naphthyridine-4-carboxamide, ACETATE ION, ...
著者Schuettelkopf, A.W.
登録日2018-10-27
公開日2019-02-27
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.56 Å)
主引用文献Structure-based design, synthesis and biological evaluation of a novel series of isoquinolone and pyrazolo[4,3-c]pyridine inhibitors of fascin 1 as potential anti-metastatic agents.
Bioorg.Med.Chem.Lett., 29, 2019
6ZN6
DownloadVisualize
BU of 6zn6 by Molmil
Protein polybromo-1 (PB1 BD2) Bound To MW278
分子名称: 1,2-ETHANEDIOL, 2-[6-azanyl-5-[(3~{R})-3-phenoxypiperidin-1-yl]pyridazin-3-yl]phenol, Protein polybromo-1
著者Preuss, F, Mathea, S, Chatterjee, D, Wanior, M, Joerger, A.C, Knapp, S.
登録日2020-07-06
公開日2020-08-26
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.02 Å)
主引用文献Pan-SMARCA/PB1 Bromodomain Inhibitors and Their Role in Regulating Adipogenesis.
J.Med.Chem., 63, 2020
5OFU
DownloadVisualize
BU of 5ofu by Molmil
Crystal structure of Leishmania major fructose-1,6-bisphosphatase in T-state.
分子名称: 6-O-phosphono-beta-D-fructofuranose, ADENOSINE MONOPHOSPHATE, CHLORIDE ION, ...
著者Yuan, M, Vasquez-Valdivieso, M.G, McNae, I.W, Michels, P.A.M, Fothergill-Gilmore, L.A, Walkinshaw, M.D.
登録日2017-07-11
公開日2017-09-20
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.62 Å)
主引用文献Structures of Leishmania Fructose-1,6-Bisphosphatase Reveal Species-Specific Differences in the Mechanism of Allosteric Inhibition.
J. Mol. Biol., 429, 2017
9EB4
DownloadVisualize
BU of 9eb4 by Molmil
Chicken YF1.7*1 presenting N-palmitoylated glycine
分子名称: Beta-2-microglobulin, CHLORIDE ION, GLYCEROL, ...
著者Khandokar, Y, Wang, C.J, Rossjohn, J, Le Nours, J.
登録日2024-11-11
公開日2025-07-23
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Molecular basis for presentation of N-myristoylated peptides by the chicken YF1∗7.1 molecule.
J.Biol.Chem., 301, 2025
9EB3
DownloadVisualize
BU of 9eb3 by Molmil
Chicken YF1.7*1 presenting N-myristoylated glycine
分子名称: Beta-2-microglobulin, CHLORIDE ION, GLYCEROL, ...
著者Khandokar, Y, Wang, C.J.H, Rossjohn, J, Le Nours, J.
登録日2024-11-11
公開日2025-07-23
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Molecular basis for presentation of N-myristoylated peptides by the chicken YF1∗7.1 molecule.
J.Biol.Chem., 301, 2025
5NYL
DownloadVisualize
BU of 5nyl by Molmil
Crystal structure of an atypical poplar thioredoxin-like2.1 active site mutant
分子名称: Thioredoxin-like protein 2.1
著者Chibani, K, Saul, F.A, Haouz, A, Rouhier, N.
登録日2017-05-11
公開日2018-02-28
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Structural snapshots along the reaction mechanism of the atypical poplar thioredoxin-like2.1.
FEBS Lett., 592, 2018
5Z5H
DownloadVisualize
BU of 5z5h by Molmil
Crystal structure of a thermostable glycoside hydrolase family 43 {beta}-1,4-xylosidase from Geobacillus thermoleovorans IT-08 in complex with D-xylose
分子名称: Beta-xylosidase, CALCIUM ION, alpha-D-xylopyranose
著者Rohman, A, van Oosterwijk, N, Puspaningsih, N.N.T, Dijkstra, B.W.
登録日2018-01-18
公開日2018-04-25
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structural basis of product inhibition by arabinose and xylose of the thermostable GH43 beta-1,4-xylosidase from Geobacillus thermoleovorans IT-08.
PLoS ONE, 13, 2018
8B8D
DownloadVisualize
BU of 8b8d by Molmil
multimerization domain of Gaboon Viper Virus 1
分子名称: Phosphoprotein
著者Tarbouriech, N, Legrand, P, Bouhris, J.M, Horie, M, Tomonaga, K, Crepin, T.
登録日2022-10-04
公開日2022-11-23
最終更新日2024-06-19
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Borna Disease Virus 1 Phosphoprotein Forms a Tetramer and Interacts with Host Factors Involved in DNA Double-Strand Break Repair and mRNA Processing.
Viruses, 14, 2022
5KMO
DownloadVisualize
BU of 5kmo by Molmil
TrkA JM-kinase with 1-(2-methyl-4-phenyl-pyrimidin-5-yl)-3-(2-pyridyl)urea
分子名称: 1-(2-methyl-4-phenyl-pyrimidin-5-yl)-3-pyridin-2-yl-urea, High affinity nerve growth factor receptor
著者Su, H.P.
登録日2016-06-27
公開日2016-12-28
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.67 Å)
主引用文献Structural characterization of nonactive site, TrkA-selective kinase inhibitors.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
7CBQ
DownloadVisualize
BU of 7cbq by Molmil
Crystal structure of PDE4D catalytic domain in complex with Apremilast
分子名称: 1,2-ETHANEDIOL, MAGNESIUM ION, N-{2-[(1S)-1-(3-ethoxy-4-methoxyphenyl)-2-(methylsulfonyl)ethyl]-1,3-dioxo-2,3-dihydro-1H-isoindol-4-yl}acetamide, ...
著者Zhang, X.L, Xu, Y.C.
登録日2020-06-13
公開日2021-01-27
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.59 Å)
主引用文献Design, synthesis, and biological evaluation of tetrahydroisoquinolines derivatives as novel, selective PDE4 inhibitors for antipsoriasis treatment.
Eur.J.Med.Chem., 211, 2021
1AI1
DownloadVisualize
BU of 1ai1 by Molmil
HIV-1 V3 LOOP MIMIC
分子名称: AIB142, IGG1-KAPPA 59.1 FAB (HEAVY CHAIN), IGG1-KAPPA 59.1 FAB (LIGHT CHAIN)
著者Ghiara, J.B, Wilson, I.A.
登録日1996-11-06
公開日1997-05-15
最終更新日2023-08-02
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Structure-based design of a constrained peptide mimic of the HIV-1 V3 loop neutralization site.
J.Mol.Biol., 266, 1997
9EU2
DownloadVisualize
BU of 9eu2 by Molmil
GH29A alpha-L-fucosidase
分子名称: 1,2-ETHANEDIOL, Alpha-L-fucosidase, SODIUM ION, ...
著者Yang, Y.Y, Zeuner, B, Morth, J.P.
登録日2024-03-27
公開日2025-03-05
実験手法X-RAY DIFFRACTION (1.84 Å)
主引用文献Structural elucidation and characterization of GH29A alpha-l-fucosidases and the effect of pH on their transglycosylation.
Febs J., 292, 2025
6GK8
DownloadVisualize
BU of 6gk8 by Molmil
Crystal structure of anti-tau antibody dmCBTAU-28.1, double mutant (S32R, E35K) of CBTAU-28.1, in complex with Tau peptide A7731 (residues 52-71)
分子名称: CHLORIDE ION, HUMAN FAB ANTIBODY FRAGMENT OF CBTAU-28.1(S32R;E35K), TAU PEPTIDE A7731 (RESIDUES 52-71)
著者Steinbacher, S, Mrosek, M, Juraszek, J.
登録日2018-05-18
公開日2018-06-13
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (2.85 Å)
主引用文献A common antigenic motif recognized by naturally occurring human VH5-51/VL4-1 anti-tau antibodies with distinct functionalities.
Acta Neuropathol Commun, 6, 2018
7CX9
DownloadVisualize
BU of 7cx9 by Molmil
Crystal structure of the SARS-CoV-2 main protease in complex with INZ-1
分子名称: 3-iodanyl-1~{H}-indazole-7-carbaldehyde, 3C-like proteinase, CHLORIDE ION, ...
著者Zeng, R, Liu, X.L, Qiao, J.X, Nan, J.S, Wang, Y.F, Li, Y.S, Yang, S.Y, Lei, J.
登録日2020-09-01
公開日2020-09-16
最終更新日2024-11-13
実験手法X-RAY DIFFRACTION (1.73 Å)
主引用文献Crystal structure of the SARS-CoV-2 main protease in complex with INZ-1
To Be Published
7NRG
DownloadVisualize
BU of 7nrg by Molmil
Crystal structure of a shortened IpgC variant in complex with (1R)-2-amino-1-(4-fluorophenyl)ethanol
分子名称: (1R)-2-amino-1-(4-fluorophenyl)ethanol, CHLORIDE ION, Chaperone protein IpgC, ...
著者Gardonyi, M, Heine, A, Klebe, G.
登録日2021-03-03
公開日2022-03-23
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.57 Å)
主引用文献Crystal structure of a shortened IpgC variant in complex with (1R)-2-amino-1-(4-fluorophenyl)ethanol
To Be Published
9ENW
DownloadVisualize
BU of 9enw by Molmil
Apo GES-1 beta-Lactamase
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, beta-lactamase
著者Beer, M, Hinchliffe, P, Spencer, J.
登録日2024-03-13
公開日2025-03-26
実験手法X-RAY DIFFRACTION (1.66 Å)
主引用文献Apo GES-1 beta-Lactamase
To Be Published
5EXJ
DownloadVisualize
BU of 5exj by Molmil
Crystal structure of M. tuberculosis lipoyl synthase at 1.64 A resolution
分子名称: (2S,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL, IRON/SULFUR CLUSTER, Lipoyl synthase
著者McLaughlin, M.I, Lanz, N.D, Goldman, P.J, Lee, K.-H, Booker, S.J, Drennan, C.L.
登録日2015-11-23
公開日2016-08-10
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.64 Å)
主引用文献Crystallographic snapshots of sulfur insertion by lipoyl synthase.
Proc.Natl.Acad.Sci.USA, 113, 2016
7CTS
DownloadVisualize
BU of 7cts by Molmil
Open form of PET-degrading cutinase Cut190 with thermostability-improving mutations of S226P/R228S/Q138A/D250C-E296C/Q123H/N202H and S176A inactivation
分子名称: 1,4-DIETHYLENE DIOXIDE, Alpha/beta hydrolase family protein, BICINE, ...
著者Emori, M, Numoto, N, Senga, A, Bekker, G.J, Kamiya, N, Ito, N, Kawai, F, Oda, M.
登録日2020-08-20
公開日2021-02-03
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (1.1 Å)
主引用文献Structural basis of mutants of PET-degrading enzyme from Saccharomonospora viridis AHK190 with high activity and thermal stability.
Proteins, 89, 2021
7CKA
DownloadVisualize
BU of 7cka by Molmil
The structure of Glycine max (Soybean) Heme oxygenase 1
分子名称: CITRIC ACID, Heme oxygenase 1, PROTOPORPHYRIN IX CONTAINING FE
著者Tohda, R, Tanaka, H, Kurisu, G.
登録日2020-07-16
公開日2020-12-30
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (1.06 Å)
主引用文献Crystal structure of higher plant heme oxygenase-1 and its mechanism of interaction with ferredoxin.
J.Biol.Chem., 296, 2020
7N9X
DownloadVisualize
BU of 7n9x by Molmil
CA-targeting nanobody is a tool for studying HIV-1 capsid lattice interactions
分子名称: Capsid protein, Nanobody, Peptidyl-prolyl cis-trans isomerase A
著者Gerber, E.E, Digianantonio, K.M, Tripler, T.N, Smaga, S.S, Summers, B.J, Xiong, Y.
登録日2021-06-18
公開日2022-06-22
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (3.511 Å)
主引用文献CA-targeting nanobody is a tool for studying HIV-1 capsid lattice interactions
To Be Published
7NU6
DownloadVisualize
BU of 7nu6 by Molmil
Crystal Structure of Neisseria gonorrhoeae LeuRS in Complex with ATP in Conformation 1
分子名称: 1,2-ETHANEDIOL, ADENOSINE-5'-TRIPHOSPHATE, Leucine--tRNA ligase, ...
著者Pang, L, Strelkov, S.V, Weeks, S.D.
登録日2021-03-11
公開日2022-08-31
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Partitioning of the initial catalytic steps of leucyl-tRNA synthetase is driven by an active site peptide-plane flip.
Commun Biol, 5, 2022

243083

件を2025-10-15に公開中

PDB statisticsPDBj update infoContact PDBjnumon