PDB: 45176 件ウェブページステータス検索Chemie searchBIRD

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8EZU	Lysozyme Anomalous Dataset at 273 K and 7.1 keV 分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, Lysozyme C, ... 著者 Doukov, T, Yabukarski, F, Herschlag, D. 登録日 2022-11-01 公開日 2023-03-15 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (1.901 Å) 主引用文献 Obtaining anomalous and ensemble information from protein crystals from 220 K up to physiological temperatures. Acta Crystallogr D Struct Biol, 79, 2023
8EZP	Lysozyme Anomalous Dataset at 260 K and 7.1 keV 分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, Lysozyme C, ... 著者 Doukov, T, Yabukarski, F, Herschlag, D. 登録日 2022-11-01 公開日 2023-03-15 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Obtaining anomalous and ensemble information from protein crystals from 220 K up to physiological temperatures. Acta Crystallogr D Struct Biol, 79, 2023
5JFD	Thrombin in complex with (S)-N-(2-(aminomethyl)-5-chlorobenzyl)-1-((benzylsulfonyl)-D-arginyl)pyrrolidine-2-carboxamide 分子名称: (2S)-N-[[2-(aminomethyl)-5-chloro-phenyl]methyl]-1-[(2R)-5-carbamimidamido-2-(phenylmethylsulfonylamino)pentanoyl]pyrrolidine-2-carboxamide, 2-acetamido-2-deoxy-beta-D-glucopyranose, DIMETHYL SULFOXIDE, ... 著者 Sandner, A, Heine, A, Klebe, G. 登録日 2016-04-19 公開日 2017-05-24 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (1.46 Å) 主引用文献 Strategies for Late-Stage Optimization: Profiling Thermodynamics by Preorganization and Salt Bridge Shielding. J.Med.Chem., 62, 2019
5JIF	Crystal structure of mouse hepatitis virus strain DVIM Hemagglutinin-Esterase 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, ... 著者 Zeng, Q.H, Bakkers, M.J.G, Feitsma, L.J, de Groot, R.J, Huizinga, E.G. 登録日 2016-04-22 公開日 2016-05-11 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Coronavirus receptor switch explained from the stereochemistry of protein-carbohydrate interactions and a single mutation. Proc.Natl.Acad.Sci.USA, 113, 2016
2E8R	Structural study of Project ID PH0725 from Pyrococcus horikoshii OT3 分子名称: Probable diphthine synthase, S-ADENOSYL-L-HOMOCYSTEINE, SODIUM ION 著者 Asada, Y, Taketa, M, Shimada, H, Matsuura, Y, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2007-01-23 公開日 2007-07-24 最終更新日 2024-05-29 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structural study of Project ID PH0725 from Pyrococcus horikoshii OT3 To be Published
2E4N	Mutant V251M structure of PH0725 from Pyrococcus horikoshii OT3 分子名称: S-ADENOSYL-L-HOMOCYSTEINE, SODIUM ION, diphthine synthase 著者 Shimizu, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2006-12-13 公開日 2007-06-19 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Mutant V251M structure of PH0725 from Pyrococcus horikoshii OT3 To be Published
8CWP	X-ray crystal structure of NTHi Protein D bound to a putative glycerol moiety 分子名称: GLYCEROL, Glycerophosphoryl diester phosphodiesterase, SODIUM ION 著者 Jones, S.P, Cook, K.H, Holmquist, M.L, Almekinder, L, DeLaney, A, Labbe, N, Perdue, J, Jackson, N, Charles, R, Pichichero, M, Kaur, R, Michel, L, Gleghorn, M.L. 登録日 2022-05-19 公開日 2022-09-28 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Vaccine target and carrier molecule nontypeable Haemophilus influenzae protein D dimerizes like the close Escherichia coli GlpQ homolog but unlike other known homolog dimers. Proteins, 91, 2023
5LBV	Structural basis of zika and dengue virus potent antibody cross-neutralization 分子名称: SODIUM ION, alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, envelope protein E 著者 Barba-Spaeth, G. 登録日 2016-06-17 公開日 2016-07-06 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Structural basis of potent Zika-dengue virus antibody cross-neutralization. Nature, 536, 2016
5X7H	Crystal Structure of Paenibacillus sp. 598K cycloisomaltooligosaccharide glucanotransferase complexed with cycloisomaltoheptaose 分子名称: CALCIUM ION, Cycloisomaltooligosaccharide glucanotransferase, MALONATE ION, ... 著者 Fujimoto, Z, Kishine, N, Suzuki, N, Suzuki, R, Momma, M, Funane, K. 登録日 2017-02-26 公開日 2017-04-26 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Isomaltooligosaccharide-binding structure ofPaenibacillussp. 598K cycloisomaltooligosaccharide glucanotransferase Biosci. Rep., 37, 2017
8EOG	Structure of the human L-type voltage-gated calcium channel Cav1.2 complexed with L-leucine 分子名称: (2R)-3-{[(R)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-(dodecanoyloxy)propyl dodecanoate, (2R)-3-{[(R)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-(dodecanoyloxy)propyl heptadecanoate, 2-acetamido-2-deoxy-beta-D-glucopyranose, ... 著者 Chen, Z, Mondal, A, Abderemane-Ali, F, Minor, D.L. 登録日 2022-10-03 公開日 2023-05-24 最終更新日 2023-07-26 実験手法 ELECTRON MICROSCOPY (3.3 Å) 主引用文献 EMC chaperone-Ca V structure reveals an ion channel assembly intermediate. Nature, 619, 2023
2BDG	Human Kallikrein 4 complex with nickel and p-aminobenzamidine 分子名称: CHLORIDE ION, Kallikrein-4, NICKEL (II) ION, ... 著者 Debela, M, Bode, W, Goettig, P, Structural Proteomics in Europe (SPINE) 登録日 2005-10-20 公開日 2006-10-03 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Crystal structures of human tissue kallikrein 4: activity modulation by a specific zinc binding site. J.Mol.Biol., 362, 2006
8EQG	Human PU.1 ETS-Domain (165-270) Bound to d(AATAAA(DU)GGAAGTGGG) 分子名称: DNA (5'-D(*AP*AP*DU*AP*AP*AP*TP*GP*GP*AP*AP*GP*TP*GP*GP*G)-3'), DNA (5'-D(*TP*CP*CP*CP*AP*CP*TP*TP*CP*CP*AP*TP*TP*TP*AP*T)-3'), SODIUM ION, ... 著者 Terrell, J.R, Poon, G.M.K. 登録日 2022-10-07 公開日 2023-07-05 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.39 Å) 主引用文献 DNA selection by the master transcription factor PU.1. Cell Rep, 42, 2023
8EKV	Human PU.1 ETS-Domain (165-270) Bound to d(AATAAGCGGATGTGGG) 分子名称: DNA (5'-D(*AP*AP*TP*AP*AP*GP*CP*GP*GP*AP*TP*GP*TP*GP*GP*G)-3'), DNA (5'-D(*TP*CP*CP*CP*AP*CP*AP*TP*CP*CP*GP*CP*TP*TP*AP*T)-3'), SODIUM ION, ... 著者 Terrell, J.R, Poon, G.M.K. 登録日 2022-09-22 公開日 2023-07-05 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.62 Å) 主引用文献 DNA selection by the master transcription factor PU.1. Cell Rep, 42, 2023
8ENG	Human PU.1 ETS-Domain (165-270) Bound to d(AATAAGCGGAAGTGGG) with Hemi-methylated CpG (forward strand) 分子名称: DNA (5'-D(*AP*AP*TP*AP*AP*G*(5CM)P*GP*GP*AP*AP*GP*TP*GP*GP*G)-3'), DNA (5'-D(*TP*CP*CP*CP*AP*CP*TP*TP*CP*CP*GP*CP*TP*TP*AP*T)-3'), SODIUM ION, ... 著者 Terrell, J.R, Poon, G.M.K. 登録日 2022-09-29 公開日 2023-07-05 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.25 Å) 主引用文献 DNA selection by the master transcription factor PU.1. Cell Rep, 42, 2023
8EK3	Human PU.1 ETS-Domain (165-270) Q226E Mutant Bound to d(AATAAGCGGAATGGGG) 分子名称: DNA (5'-D(*AP*AP*TP*AP*AP*GP*CP*GP*GP*AP*AP*TP*GP*GP*GP*G)-3'), DNA (5'-D(*TP*CP*CP*CP*CP*AP*TP*TP*CP*CP*GP*CP*TP*TP*AP*T)-3'), SODIUM ION, ... 著者 Terrell, J.R, Poon, G.M.K. 登録日 2022-09-19 公開日 2023-07-05 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.38 Å) 主引用文献 DNA selection by the master transcription factor PU.1. Cell Rep, 42, 2023
8F3T	Crystal structure of Penicillin Binding Protein 5 (PBP5) T485M T499I V629E variant apo form from Enterococcus faecium 分子名称: Penicillin binding protein 5, SODIUM ION, SULFATE ION 著者 D'Andrea, E.D, Choy, M.S, Schoenle, M.V, Page, R, Peti, W. 登録日 2022-11-10 公開日 2023-07-05 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2.56 Å) 主引用文献 The Molecular Basis for Resistance of E. faecium PBP5 to beta-lactam Antibiotics Nat Commun, 2023
8EKZ	Human PU.1 ETS-Domain (165-270) Bound to d(AATAAGGAGAAGTAGG) 分子名称: DNA (5'-D(*AP*AP*TP*AP*AP*GP*GP*AP*GP*AP*AP*GP*TP*AP*GP*G)-3'), DNA (5'-D(*TP*CP*CP*TP*AP*CP*TP*TP*CP*TP*CP*CP*TP*TP*AP*T)-3'), SODIUM ION, ... 著者 Terrell, J.R, Poon, G.M.K. 登録日 2022-09-22 公開日 2023-07-05 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.42 Å) 主引用文献 DNA selection by the master transcription factor PU.1. Cell Rep, 42, 2023
8EMD	Human PU.1 ETS-Domain (165-270) Q226E Mutant Bound to d(AATAAGCGGAAGTGGG) 分子名称: DNA (5'-D(*AP*AP*TP*AP*AP*GP*CP*GP*GP*AP*AP*GP*TP*GP*GP*G)-3'), DNA (5'-D(*TP*CP*CP*CP*AP*CP*TP*TP*CP*CP*GP*CP*TP*TP*AP*T)-3'), SODIUM ION, ... 著者 Terrell, J.R, Poon, G.M.K. 登録日 2022-09-27 公開日 2023-07-05 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.55 Å) 主引用文献 DNA selection by the master transcription factor PU.1. Cell Rep, 42, 2023
8EO4	Human PU.1 ETS-Domain (165-270) Bound to d(AATAAGCGGAAGTGGG) with Di-methylated CpG sites 分子名称: DNA (5'-D(*AP*AP*TP*AP*AP*GP*CP*GP*GP*AP*AP*GP*TP*GP*GP*G)-3'), DNA (5'-D(*TP*CP*CP*CP*AP*CP*TP*TP*CP*CP*GP*CP*TP*TP*AP*T)-3'), SODIUM ION, ... 著者 Terrell, J.R, Poon, G.M.K. 登録日 2022-10-02 公開日 2023-07-05 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.24 Å) 主引用文献 DNA selection by the master transcription factor PU.1. Cell Rep, 42, 2023
8EQK	Human PU.1 ETS-Domain (165-270) Bound to d(AATAACCGGAAGTGGG) 分子名称: DNA (5'-D(*AP*AP*TP*AP*AP*CP*CP*GP*GP*AP*AP*GP*TP*GP*GP*G)-3'), DNA (5'-D(*TP*CP*CP*CP*AP*CP*TP*TP*CP*CP*GP*GP*TP*TP*AP*T)-3'), SODIUM ION, ... 著者 Terrell, J.R, Poon, G.M.K. 登録日 2022-10-07 公開日 2023-07-05 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.45 Å) 主引用文献 DNA selection by the master transcription factor PU.1. Cell Rep, 42, 2023
8EHE	Structure of Tannerella forsythia potempin C in complex with mirolase 分子名称: 1,2-ETHANEDIOL, CALCIUM ION, GLYCEROL, ... 著者 Gomis-Ruth, F.X. 登録日 2022-09-14 公開日 2022-12-21 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.1 Å) 主引用文献 A unique network of attack, defence and competence on the outer membrane of the periodontitis pathogen Tannerella forsythia. Chem Sci, 14, 2023
5JIL	Crystal structure of rat coronavirus strain New-Jersey Hemagglutinin-Esterase in complex with 4N-acetyl sialic acid 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Hemagglutinin-esterase, ... 著者 Bakkers, M.J.G, Feitsma, L.J, de Groot, R.J, Huizinga, E.G. 登録日 2016-04-22 公開日 2016-05-11 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 Coronavirus receptor switch explained from the stereochemistry of protein-carbohydrate interactions and a single mutation. Proc.Natl.Acad.Sci.USA, 113, 2016
5JMO	X-ray structure of furin in complex with the inhibitory antibody Nb14 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, CMK-inhibitor, ... 著者 Dahms, S.O, Than, M.E. 登録日 2016-04-29 公開日 2016-12-07 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (1.998 Å) 主引用文献 The structure of a furin-antibody complex explains non-competitive inhibition by steric exclusion of substrate conformers. Sci Rep, 6, 2016
8DYZ	Hen lysozyme in tetragonal space group at ambient temperature - diffuse scattering dataset 分子名称: CHLORIDE ION, Lysozyme C, SODIUM ION 著者 Meisburger, S.P, Ando, N. 登録日 2022-08-05 公開日 2022-09-07 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.272 Å) 主引用文献 Robust total X-ray scattering workflow to study correlated motion of proteins in crystals. Nat Commun, 14, 2023
8DZ7	Hen lysozyme in orthorhombic space group at ambient temperature - diffuse scattering dataset 分子名称: CHLORIDE ION, Lysozyme C, SODIUM ION 著者 Meisburger, S.P, Imran, S.M.S, Ando, N. 登録日 2022-08-06 公開日 2022-09-07 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.34 Å) 主引用文献 Robust total X-ray scattering workflow to study correlated motion of proteins in crystals. Nat Commun, 14, 2023

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