PDB: 47011 件ウェブページステータス検索Chemie searchBIRD

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6O1O	Cryo-EM structure of the T. thermophilus Csm complex bound to target ssRNA 分子名称: Csm1, Csm2, Csm3, ... 著者 Liu, J.J, Liu, T.Y. 登録日 2019-02-21 公開日 2019-07-10 最終更新日 2024-03-13 実験手法 ELECTRON MICROSCOPY (3.8 Å) 主引用文献 Target preference of Type III-A CRISPR-Cas complexes at the transcription bubble. Nat Commun, 10, 2019
6ZA3	Structure of the transcriptional repressor Atu1419 (VanR) from agrobacterium fabrum in complex a palindromic DNA (C2221 space group) 分子名称: 1,2-ETHANEDIOL, ACETATE ION, CHLORIDE ION, ... 著者 Morera, S, Vigouroux, A, Legrand, P. 登録日 2020-06-04 公開日 2020-12-02 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (2.05 Å) 主引用文献 Characterization of the first tetrameric transcription factor of the GntR superfamily with allosteric regulation from the bacterial pathogen Agrobacterium fabrum. Nucleic Acids Res., 49, 2021
3ISP	Crystal structure of ArgP from Mycobacterium tuberculosis 分子名称: HTH-type transcriptional regulator Rv1985c/MT2039 著者 Zhou, X, Lou, Z, Sheng, F, Bartlam, M, Wang, H, Rao, Z. 登録日 2009-08-27 公開日 2010-02-16 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Crystal Structure of ArgP from Mycobacterium tuberculosis Confirms Two Distinct Conformations of Full-length LysR Transcriptional Regulators and Reveals Its Function in DNA Binding and Transcriptional Regulation. J.Mol.Biol., 2009
2AQL	Crystal Structure of the MRG15 MRG domain 分子名称: Mortality factor 4-like protein 1 著者 Quiocho, F.A, Bowman, B.R. 登録日 2005-08-18 公開日 2006-02-28 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Multipurpose MRG domain involved in cell senescence and proliferation exhibits structural homology to a DNA-interacting domain. Structure, 14, 2006
4C3G	cryo-EM structure of activated and oligomeric restriction endonuclease SgrAI 分子名称: 5'-D(*CP*CP*GP*GP*TP*GP*TP*GP*AP*AP*GP*AP*CP*CP *CP*AP*CP*GP*CP*AP*TP*CP)-3', 5'-D(*GP*AP*TP*GP*CP*GP*TP*GP*GP*GP*TP*CP*TP*TP *CP*AP*CP*AP)-3', SGRAIR RESTRICTION ENZYME 著者 Lyumkis, D, Talley, H, Stewart, A, Shah, S, Park, C.K, Tama, F, Potter, C.S, Carragher, B, Horton, N.C. 登録日 2013-08-23 公開日 2013-09-11 最終更新日 2024-05-08 実験手法 ELECTRON MICROSCOPY (8.6 Å) 主引用文献 Allosteric Regulation of DNA Cleavage and Sequence-Specificity Through Run-on Oligomerization. Structure, 21, 2013
1KKX	Solution structure of the DNA-binding domain of ADR6 分子名称: Transcription regulatory protein ADR6 著者 Tu, X, Wu, J, Xu, Y, Shi, Y. 登録日 2001-12-10 公開日 2002-07-17 最終更新日 2024-05-29 実験手法 SOLUTION NMR 主引用文献 1H, 13C and 15N resonance assignments and secondary structure of ADR6 DNA-binding domain. J.Biomol.Nmr, 21, 2001
7LVV	cryoEM structure DrdV-DNA complex 分子名称: CALCIUM ION, DNA (27-MER), DNA (28-MER), ... 著者 Shen, B.W, Stoddard, B.L. 登録日 2021-02-26 公開日 2021-03-17 最終更新日 2024-03-06 実験手法 ELECTRON MICROSCOPY (3.25 Å) 主引用文献 Coordination of phage genome degradation versus host genome protection by a bifunctional restriction-modification enzyme visualized by CryoEM. Structure, 29, 2021
7LO5	cryoEM structure DrdV-DNA complex 分子名称: CALCIUM ION, DNA (27-MER), DNA (28-MER), ... 著者 Shen, B.W, Stoddard, B.L. 登録日 2021-02-09 公開日 2021-03-17 最終更新日 2024-03-06 実験手法 ELECTRON MICROSCOPY (2.86 Å) 主引用文献 Coordination of phage genome degradation versus host genome protection by a bifunctional restriction-modification enzyme visualized by CryoEM. Structure, 29, 2021
7OMX	Thermus sp. 2.9 DarT in complex with carba-NAD+ 分子名称: CARBA-NICOTINAMIDE-ADENINE-DINUCLEOTIDE, DarT domain-containing protein, THIOCYANATE ION 著者 Schuller, M, Ariza, A. 登録日 2021-05-24 公開日 2021-06-23 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (1.52 Å) 主引用文献 Molecular basis for DarT ADP-ribosylation of a DNA base. Nature, 596, 2021
7OMV	Thermus sp. 2.9 DarT 分子名称: CHLORIDE ION, DarT domain-containing protein, THIOCYANATE ION 著者 Schuller, M, Ariza, A. 登録日 2021-05-24 公開日 2021-06-23 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (1.29 Å) 主引用文献 Molecular basis for DarT ADP-ribosylation of a DNA base. Nature, 596, 2021
7OMW	Thermus sp. 2.9 DarT in complex with NAD+ 分子名称: DarT domain-containing protein, GLYCEROL, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ... 著者 Schuller, M, Ariza, A. 登録日 2021-05-24 公開日 2021-06-23 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (1.3 Å) 主引用文献 Molecular basis for DarT ADP-ribosylation of a DNA base. Nature, 596, 2021
4R94	Structure of the nickase domain of NS1 from MVM complexed with magnesium 分子名称: MAGNESIUM ION, Non-structural protein NS1 著者 Liang, L, Zhao, H, Tang, L. 登録日 2014-09-03 公開日 2015-01-21 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (1.668 Å) 主引用文献 Structures of minute virus of mice replication initiator protein N-terminal domain: Insights into DNA nicking and origin binding. Virology, 476C, 2014
7U46	Cryo-EM structure of CENP-A nucleosome (palindromic alpha satellite DNA) in complex with CENP-N 分子名称: Centromere protein N, DNA (147-MER), Histone H2A, ... 著者 Zhou, K, Luger, K. 登録日 2022-02-28 公開日 2022-03-16 最終更新日 2024-02-21 実験手法 ELECTRON MICROSCOPY (2.68 Å) 主引用文献 CENP-N promotes the compaction of centromeric chromatin. Nat.Struct.Mol.Biol., 29, 2022
7U47	CryoEM structure of CENP-N promoted nucleosome stacks with CENP-A and palindromic alpha satellite DNA sequence 分子名称: Centromere protein N, DNA (147-MER), Histone H2A, ... 著者 Zhou, K, Luger, K. 登録日 2022-02-28 公開日 2022-03-16 最終更新日 2024-02-21 実験手法 ELECTRON MICROSCOPY (7.5 Å) 主引用文献 CENP-N promotes the compaction of centromeric chromatin. Nat.Struct.Mol.Biol., 29, 2022
8FFI	Structure of tetramerized MapSPARTA upon guide RNA-mediated target DNA binding 分子名称: MAGNESIUM ION, TIR-APAZ, guide RNA, ... 著者 Shen, Z.F, Yang, X.Y, Fu, T.M. 登録日 2022-12-08 公開日 2023-08-23 最終更新日 2023-09-20 実験手法 ELECTRON MICROSCOPY (2.7 Å) 主引用文献 Oligomerization-mediated activation of a short prokaryotic Argonaute. Nature, 621, 2023
2BNK	The structure of phage phi29 replication organizer protein p16.7 分子名称: EARLY PROTEIN GP16.7 著者 Albert, A, Asensio, J.L, Munoz-Espin, D, Gonzalez, C, Hermoso, J.A, Villar, L, Jimenez-Barbero, J, Salas, M, Meijer, W.J.J. 登録日 2005-03-28 公開日 2005-04-05 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Structure of the Functional Domain of {Varphi}29 Replication Organizer: Insights Into Oligomerization and DNA Binding. J.Biol.Chem., 280, 2005
1XD7	Crystal structure of a putative DNA binding protein 分子名称: SULFATE ION, ywnA 著者 Agarwal, R, Swaminathan, S, Burley, S.K, New York SGX Research Center for Structural Genomics (NYSGXRC) 登録日 2004-09-04 公開日 2004-09-21 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Crystal structure of a putative DNA binding protein To be Published
3ZQP	Crystal structure of the small terminase oligomerization domain from a SPP1-like bacteriophage 分子名称: TERMINASE SMALL SUBUNIT 著者 Buttner, C.R, Chechik, M, Ortiz-Lombardia, M, Smits, C, Chechik, V, Jeschke, G, Dykeman, E, Benini, S, Alonso, J.C, Antson, A.A. 登録日 2011-06-10 公開日 2011-12-28 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Structural Basis for DNA Recognition and Loading Into a Viral Packaging Motor. Proc.Natl.Acad.Sci.USA, 109, 2012
6GTS	Structure of the AtaT-AtaR complex bound DNA 分子名称: Acetyltransferase, DNA, DUF1778 domain-containing protein 著者 Garcia-Pino, A, Jurenas, D. 登録日 2018-06-19 公開日 2019-03-06 最終更新日 2024-05-15 実験手法 X-RAY DIFFRACTION (3.357 Å) 主引用文献 Mechanism of regulation and neutralization of the AtaR-AtaT toxin-antitoxin system. Nat. Chem. Biol., 15, 2019
7XI4	Crystal Structure of the NPAS4-ARNT heterodimer in complex with DNA 分子名称: Aryl hydrocarbon receptor nuclear translocator, DNA (5'-D(*GP*GP*AP*GP*GP*TP*CP*GP*TP*GP*AP*GP*TP*GP*AP*T)-3'), DNA (5'-D(P*CP*CP*AP*TP*CP*AP*CP*TP*CP*AP*CP*GP*AP*CP*CP*T)-3'), ... 著者 Sun, X.N, Jing, L.Q, Li, F.W, Wu, D.L. 登録日 2022-04-12 公開日 2022-11-02 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (4.707 Å) 主引用文献 Structures of NPAS4-ARNT and NPAS4-ARNT2 heterodimers reveal new dimerization modalities in the bHLH-PAS transcription factor family. Proc.Natl.Acad.Sci.USA, 119, 2022
7UIM	CryoEM Structure of an Group II Intron Retroelement (apo-complex) 分子名称: AMMONIUM ION, E.r IIC Intron, Group II intron reverse transcriptase/maturase, ... 著者 Chung, K, Xu, L. 登録日 2022-03-29 公開日 2022-11-23 最終更新日 2024-06-12 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Structures of a mobile intron retroelement poised to attack its structured DNA target Science, 378, 2022
3K9K	Transposase domain of Metnase 分子名称: Histone-lysine N-methyltransferase SETMAR 著者 Goodwin, K.D, He, H, Imasaki, T, Lee, S.-H, Georgiadis, M.M. 登録日 2009-10-15 公開日 2010-07-14 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.55 Å) 主引用文献 Crystal structure of the human Hsmar1-derived transposase domain in the DNA repair enzyme Metnase. Biochemistry, 49, 2010
3K9J	Transposase domain of Metnase 分子名称: 1,2-ETHANEDIOL, CALCIUM ION, Histone-lysine N-methyltransferase SETMAR 著者 Goodwin, K.D, He, H, Imasaki, T, Lee, S.-H, Georgiadis, M.M. 登録日 2009-10-15 公開日 2010-07-14 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.903 Å) 主引用文献 Crystal structure of the human Hsmar1-derived transposase domain in the DNA repair enzyme Metnase. Biochemistry, 49, 2010
6JQ1	Crystal Structure of DdrO from Deinococcus geothermalis 分子名称: LITHIUM ION, Transcriptional regulator, XRE family 著者 Lu, H, Hua, Y, Zhao, Y. 登録日 2019-03-28 公開日 2019-08-28 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Structure and DNA damage-dependent derepression mechanism for the XRE family member DG-DdrO. Nucleic Acids Res., 47, 2019
8TG8	Structure of Red beta C-terminal domain in complex with SSB C-terminal peptide, Form 3 分子名称: Recombination protein bet, TRP-MET-ASP-PHE-ASP-ASP-ASP-ILE-PRO-PHE 著者 Bell, C.E. 登録日 2023-07-12 公開日 2024-03-13 最終更新日 2024-05-15 実験手法 X-RAY DIFFRACTION (1.576 Å) 主引用文献 Structural Basis for the Interaction of Red beta Single-Strand Annealing Protein with Escherichia coli Single-Stranded DNA-Binding Protein. J.Mol.Biol., 436, 2024

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