PDB: 45953 件ウェブページステータス検索Chemie searchBIRD

---

1UG2	Solution Structure of Mouse Hypothetical Gene (2610100B20Rik) Product Homologous to Myb DNA-binding Domain 分子名称: 2610100B20Rik gene product 著者 Zhao, C, Kigawa, T, Tochio, N, Koshiba, S, Inoue, M, Shirouzu, M, Terada, T, Yabuki, T, Aoki, M, Seki, E, Matsuda, T, Tanaka, A, Osanai, T, Arakawa, T, Carninci, P, Kawai, J, Hayashizaki, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2003-06-11 公開日 2004-06-22 最終更新日 2023-12-27 実験手法 SOLUTION NMR 主引用文献 Solution Structure of Mouse Hypothetical Gene (2610100B20Rik) Product Homologous to Myb DNA-binding Domain To be Published
6JIR	Crystal structure of C. crescentus beta sliding clamp with PEG bound to putative beta-motif tethering region 分子名称: 1,2-ETHANEDIOL, Beta sliding clamp, DI(HYDROXYETHYL)ETHER, ... 著者 Jiang, X, Teng, M, Li, X. 登録日 2019-02-23 公開日 2019-11-27 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Caulobacter crescentus beta sliding clamp employs a noncanonical regulatory model of DNA replication. Febs J., 287, 2020
6WE8	YTH domain of human YTHDC1 分子名称: 1,2-ETHANEDIOL, GLYCEROL, SULFATE ION, ... 著者 Horton, J.R, Cheng, X. 登録日 2020-04-01 公開日 2020-07-15 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (1.18 Å) 主引用文献 Biochemical and structural basis for YTH domain of human YTHDC1 binding to methylated adenine in DNA. Nucleic Acids Res., 48, 2020
8WD8	Cryo-EM structure of TtdAgo-guide DNA-target DNA complex 分子名称: Argonaute family protein, Guide DNA, MAGNESIUM ION, ... 著者 Zhuang, L. 登録日 2023-09-14 公開日 2024-01-31 最終更新日 2024-05-01 実験手法 ELECTRON MICROSCOPY (2.9 Å) 主引用文献 Molecular mechanism for target recognition, dimerization, and activation of Pyrococcus furiosus Argonaute. Mol.Cell, 84, 2024
1RIY	HU mutant V42I from Thermotoga maritima 分子名称: Hu DNA-binding protein 著者 Kavounis, C, Petratos, K, Tucker, P, Vorgias, C.E. 登録日 2003-11-18 公開日 2004-12-07 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 The structure of the DNA binding protein HU Thermotoga maritima with a single conservative substitution (V42I) that confers significant destabilisation To be Published
8JPX	Cryo-EM structure of PfAgo-guide DNA-target DNA complex 分子名称: Excess DNA, Guide DNA, MAGNESIUM ION, ... 著者 Zhuang, L. 登録日 2023-06-13 公開日 2024-01-31 最終更新日 2024-05-01 実験手法 ELECTRON MICROSCOPY (2.9 Å) 主引用文献 Molecular mechanism for target recognition, dimerization, and activation of Pyrococcus furiosus Argonaute. Mol.Cell, 84, 2024
7CE1	Complex STRUCTURE OF TRANSCRIPTION FACTOR SghR with its COGNATE DNA 分子名称: LacI-type transcription factor, promoter DNA 著者 Ye, F.Z, Wang, C, Yan, X.F, Zhang, L.H, Gao, Y.G. 登録日 2020-06-21 公開日 2020-07-15 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 Structural basis of a novel repressor, SghR, controllingAgrobacteriuminfection by cross-talking to plants. J.Biol.Chem., 295, 2020
5UVQ	Scabin (W155A) toxin from Streptomyces scabies 分子名称: Scabin 著者 Lyons, B, Lidster, T, Merrill, A.R. 登録日 2017-02-20 公開日 2017-12-20 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Characterization of the catalytic signature of Scabin toxin, a DNA-targeting ADP-ribosyltransferase. Biochem. J., 475, 2018
5JIG	Crytsal structure of Wss1 from S. pombe 分子名称: NICKEL (II) ION, OXYGEN MOLECULE, Ubiquitin and WLM domain-containing metalloprotease SPCC1442.07c 著者 Groll, M, Stingele, J, Boulton, S. 登録日 2016-04-22 公開日 2016-11-09 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (1 Å) 主引用文献 Mechanism and Regulation of DNA-Protein Crosslink Repair by the DNA-Dependent Metalloprotease SPRTN. Mol.Cell, 64, 2016
5TLB	Scabin toxin from Streptomyces scabies in complex with NADH 分子名称: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, Scabin 著者 Lyons, B, Dutta, D, Ravulapalli, R, Merrill, A.R. 登録日 2016-10-10 公開日 2017-10-11 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Characterization of the catalytic signature of Scabin toxin, a DNA-targeting ADP-ribosyltransferase. Biochem. J., 475, 2018
7L34	Human DNA Ligase 1 - R641L nicked DNA complex 分子名称: ADENOSINE MONOPHOSPHATE, DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*TP*C)-3'), DNA (5'-D(*GP*TP*CP*CP*GP*AP*CP*GP*AP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), ... 著者 Tumbale, P.P, Williams, R.S, Schellenberg, M.S. 登録日 2020-12-17 公開日 2021-01-13 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (1.901 Å) 主引用文献 LIG1 syndrome mutations remodel a cooperative network of ligand binding interactions to compromise ligation efficiency. Nucleic Acids Res., 49, 2021
7L35	Human DNA Ligase 1 - R771W nicked DNA complex 分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ADENOSINE MONOPHOSPHATE, DI(HYDROXYETHYL)ETHER, ... 著者 Tumbale, P.P, Williams, R.S, Schellenberg, M.S. 登録日 2020-12-17 公開日 2021-01-13 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 LIG1 syndrome mutations remodel a cooperative network of ligand binding interactions to compromise ligation efficiency. Nucleic Acids Res., 49, 2021
2AQL	Crystal Structure of the MRG15 MRG domain 分子名称: Mortality factor 4-like protein 1 著者 Quiocho, F.A, Bowman, B.R. 登録日 2005-08-18 公開日 2006-02-28 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Multipurpose MRG domain involved in cell senescence and proliferation exhibits structural homology to a DNA-interacting domain. Structure, 14, 2006
5GVS	Crystal structure of the DDX41 DEAD domain in an apo open form 分子名称: Probable ATP-dependent RNA helicase DDX41 著者 Omura, H, Oikawa, D, Nakane, T, Kato, M, Ishii, R, Goto, Y, Suga, H, Ishitani, R, Tokunaga, F, Nureki, O. 登録日 2016-09-06 公開日 2016-10-19 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Structural and Functional Analysis of DDX41: a bispecific immune receptor for DNA and cyclic dinucleotide Sci Rep, 6, 2016
4HH2	Structure of PpsR without the HTH motif from Rb. sphaeroides 分子名称: Transcriptional regulator, PpsR 著者 Winkler, A, Heintz, U, Lindner, R, Reinstein, J, Shoeman, R, Schlichting, I. 登録日 2012-10-09 公開日 2013-06-05 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 A ternary AppA-PpsR-DNA complex mediates light regulation of photosynthesis-related gene expression. Nat.Struct.Mol.Biol., 20, 2013
5GVR	Crystal structure of the DDX41 DEAD domain in an apo closed form 分子名称: (2S)-2-hydroxybutanedioic acid, Probable ATP-dependent RNA helicase DDX41 著者 Omura, H, Oikawa, D, Nakane, T, Kato, M, Ishii, R, Goto, Y, Suga, H, Ishitani, R, Tokunaga, F, Nureki, O. 登録日 2016-09-06 公開日 2016-10-19 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Structural and Functional Analysis of DDX41: a bispecific immune receptor for DNA and cyclic dinucleotide Sci Rep, 6, 2016
8U61	Human RADX tetramer bound to ssDNA 分子名称: RPA-related protein RADX, dT25 DNA (25-MER) 著者 Balakrishnan, S, Chazin, W.J. 登録日 2023-09-13 公開日 2024-01-31 最終更新日 2024-03-27 実験手法 ELECTRON MICROSCOPY (4 Å) 主引用文献 Structure of RADX and mechanism for regulation of RAD51 nucleofilaments. Proc.Natl.Acad.Sci.USA, 121, 2024
2BNK	The structure of phage phi29 replication organizer protein p16.7 分子名称: EARLY PROTEIN GP16.7 著者 Albert, A, Asensio, J.L, Munoz-Espin, D, Gonzalez, C, Hermoso, J.A, Villar, L, Jimenez-Barbero, J, Salas, M, Meijer, W.J.J. 登録日 2005-03-28 公開日 2005-04-05 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Structure of the Functional Domain of {Varphi}29 Replication Organizer: Insights Into Oligomerization and DNA Binding. J.Biol.Chem., 280, 2005
8GCC	T. cruzi topoisomerase II alpha bound to dsDNA and the covalent inhibitor CT1 分子名称: 2-{3-[(Z)-iminomethyl]-1H-1,2,4-triazol-1-yl}-1-{(3M)-3-[2-(trifluoromethyl)phenyl]-6H-pyrrolo[3,4-b]pyridin-6-yl}ethan-1-one, DNA (28-MER), DNA topoisomerase 2 著者 Schenk, A, Deniston, C, Noeske, J. 登録日 2023-03-01 公開日 2023-07-12 実験手法 ELECTRON MICROSCOPY (2.94 Å) 主引用文献 Cyanotriazoles are selective topoisomerase II poisons that rapidly cure trypanosome infections. Science, 380, 2023
1N1J	Crystal structure of the NF-YB/NF-YC histone pair 分子名称: NF-YB, NF-YC 著者 Romier, C, Cocchiarella, F, Mantovani, R, Moras, D. 登録日 2002-10-18 公開日 2003-02-18 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (1.67 Å) 主引用文献 The NF-YB/NF-YC structure gives insight into DNA binding and transcription regulation by CCAAT factor NF-Y J.Biol.Chem., 278, 2003
4Z0U	RNase HI/SSB-Ct complex 分子名称: Ribonuclease H, SSB-Ct Peptide 著者 Petzold, C, Keck, J.L. 登録日 2015-03-26 公開日 2015-04-29 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Interaction with Single-stranded DNA-binding Protein Stimulates Escherichia coli Ribonuclease HI Enzymatic Activity. J.Biol.Chem., 290, 2015
3E6C	CprK OCPA DNA Complex 分子名称: (3-CHLORO-4-HYDROXYPHENYL)ACETIC ACID, Cyclic nucleotide-binding protein, DNA (5'-D(P*DGP*DCP*DAP*DTP*DTP*DAP*DAP*DCP*DAP*DTP*DGP*DCP*DC)-3'), ... 著者 Levy, C. 登録日 2008-08-15 公開日 2008-09-30 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Molecular basis of halorespiration control by CprK, a CRP-FNR type transcriptional regulator Mol.Microbiol., 70, 2008
2ENK	Solution structure of a putativ DNA-binding domain of the humansolute carrier family 30 (zinc transporter) protein 分子名称: Solute carrier family 30 member 9 著者 Goroncy, A.K, Tochio, N, Tomizawa, T, Koshiba, S, Watanabe, S, Harada, T, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2007-03-28 公開日 2007-10-02 最終更新日 2024-05-29 実験手法 SOLUTION NMR 主引用文献 Solution structure of a putativ DNA-binding domain of the humansolute carrier family 30 (zinc transporter) protein To be Published
1DOQ	THE C-TERMINAL DOMAIN OF THE RNA POLYMERASE ALPHA SUBUNIT FROM THERMUS THERMOPHILUS 分子名称: RNA POLYMERASE ALPHA SUBUNIT 著者 Wada, T, Yamazaki, T, Kyogoku, Y. 登録日 1999-12-21 公開日 2000-01-05 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 The structure and the characteristic DNA binding property of the C-terminal domain of the RNA polymerase alpha subunit from Thermus thermophilus. J.Biol.Chem., 275, 2000
1MIJ	Crystal Structure of the Homeo-prospero Domain of D. melanogaster Prospero 分子名称: Protein prospero 著者 Ryter, J.M, Doe, C.Q, Matthews, B.W. 登録日 2002-08-23 公開日 2002-12-04 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (2.05 Å) 主引用文献 Structure of the DNA Binding Region of Prospero Reveals a Novel Homeo-Prospero Domain Structure, 10, 2002

<412413414415416417418419420421422423424425426427>