PDB: 46200 件ウェブページステータス検索Chemie searchBIRD

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6PQX	Cryo-EM structure of HzTransib/nicked TIR substrate DNA hairpin forming complex (HFC) 分子名称: CALCIUM ION, DNA (5'-D(P*CP*AP*CP*GP*GP*TP*GP*GP*AP*TP*CP*GP*AP*AP*AP*A)-3'), DNA (5'-D(P*TP*CP*TP*GP*GP*CP*CP*TP*AP*GP*AP*TP*CP*T)-3'), ... 著者 Liu, C, Yang, Y, Schatz, D.G. 登録日 2019-07-10 公開日 2019-10-09 最終更新日 2024-03-20 実験手法 ELECTRON MICROSCOPY (4.6 Å) 主引用文献 Structures of a RAG-like transposase during cut-and-paste transposition. Nature, 575, 2019
4YWM	Pyrococcus furiosus MCM N-terminal domain beta-turn triple mutant pentameric ring 分子名称: Cell division control protein 21, SULFATE ION, ZINC ION 著者 Froelich, C.A, Enemark, E.J. 登録日 2015-03-20 公開日 2015-09-23 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 MCM ring hexamerization is a prerequisite for DNA-binding. Nucleic Acids Res., 43, 2015
2MRN	Structure of truncated EcMazE 分子名称: Antitoxin MazE 著者 Zorzini, V, Buts, L, Loris, R, van Nuland, N.A.J. 登録日 2014-07-12 公開日 2015-02-04 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Escherichia coli antitoxin MazE as transcription factor: insights into MazE-DNA binding. Nucleic Acids Res., 43, 2015
2JYD	Structure of the fifth zinc finger of Myelin Transcription Factor 1 分子名称: F5 domain of Myelin transcription factor 1, ZINC ION 著者 Gamsjaeger, R, Swanton, M.K, Kobus, F.J, Lehtomaki, E, Lowry, J.A, Kwan, A.H, Matthews, J.M, Mackay, J.P. 登録日 2007-12-12 公開日 2008-01-15 最終更新日 2024-05-29 実験手法 SOLUTION NMR 主引用文献 Structural and biophysical analysis of the DNA binding properties of myelin transcription factor 1. J.Biol.Chem., 283, 2008
4AUW	CRYSTAL STRUCTURE OF THE BZIP HOMODIMERIC MAFB IN COMPLEX WITH THE C- MARE BINDING SITE 分子名称: (2R,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL, C-MARE BINDING SITE (5'-D(*AP*TP*AP*AP*TP*GP*CP*TP* GP*AP*CP*GP*TP*CP*AP*GP*CP*AP*AP*TP*T)-3'), MERCURY (II) ION, ... 著者 Textor, L.C, Holton, S, Wilmanns, M. 登録日 2012-05-22 公開日 2013-06-05 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Expression, purification, crystallization and preliminary crystallographic analysis of the mouse transcription factor MafB in complex with its DNA-recognition motif Cmare Acta Crystallogr Sect F Struct Biol Cryst Commun., 63, 2007
4YWK	Pyrococcus furiosus MCM N-terminal domain with Zinc-binding subdomain B deleted 分子名称: Cell division control protein 21 著者 Froelich, C.A, Enemark, E.J. 登録日 2015-03-20 公開日 2015-09-23 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.55 Å) 主引用文献 MCM ring hexamerization is a prerequisite for DNA-binding. Nucleic Acids Res., 43, 2015
6S58	AvaII restriction endonuclease in the absence of nucleic acids 分子名称: CALCIUM ION, Type II site-specific deoxyribonuclease, UNKNOWN ATOM OR ION 著者 Kisiala, M, Kowalska, M, Korza, H, Czapinska, H, Bochtler, M. 登録日 2019-06-30 公開日 2020-05-20 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (2.32 Å) 主引用文献 Restriction endonucleases that cleave RNA/DNA heteroduplexes bind dsDNA in A-like conformation. Nucleic Acids Res., 48, 2020
4YWL	Pyrococcus furiosus MCM N-terminal domain F179A point mutant pentameric ring 分子名称: Cell division control protein 21, SULFATE ION, ZINC ION 著者 Froelich, C.A, Enemark, E.J. 登録日 2015-03-20 公開日 2015-09-23 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 MCM ring hexamerization is a prerequisite for DNA-binding. Nucleic Acids Res., 43, 2015
7LO5	cryoEM structure DrdV-DNA complex 分子名称: CALCIUM ION, DNA (27-MER), DNA (28-MER), ... 著者 Shen, B.W, Stoddard, B.L. 登録日 2021-02-09 公開日 2021-03-17 最終更新日 2024-03-06 実験手法 ELECTRON MICROSCOPY (2.86 Å) 主引用文献 Coordination of phage genome degradation versus host genome protection by a bifunctional restriction-modification enzyme visualized by CryoEM. Structure, 29, 2021
7LVV	cryoEM structure DrdV-DNA complex 分子名称: CALCIUM ION, DNA (27-MER), DNA (28-MER), ... 著者 Shen, B.W, Stoddard, B.L. 登録日 2021-02-26 公開日 2021-03-17 最終更新日 2024-03-06 実験手法 ELECTRON MICROSCOPY (3.25 Å) 主引用文献 Coordination of phage genome degradation versus host genome protection by a bifunctional restriction-modification enzyme visualized by CryoEM. Structure, 29, 2021
5A77	Crystal structure of the homing endonuclease I-CvuI in complex with I- CreI target (C1221) in the presence of 2 mM Mg revealing DNA cleaved 分子名称: 10MER DNA, 5'-D(*GP*AP*CP*GP*TP*TP*TP*TP* GP*AP*DGP*AP*CP*GP*TP*TP*TP*TP*GP*A)-3', 14MER DNA, ... 著者 Molina, R, Redondo, P, LopezMendez, B, Villate, M, Merino, N, Blanco, F.J, Valton, J, Grizot, S, Duchateau, P, Prieto, J, Montoya, G. 登録日 2015-07-03 公開日 2015-09-23 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Crystal Structure of the Homing Endonuclease I-Cvui Provides a New Template for Genome Modification J.Biol.Chem., 290, 2015
6JGX	Crystal structure of the transcriptional regulator CadR from P. putida in complex with Cadmium(II) and DNA 分子名称: CADMIUM ION, CadR, DNA (5'-D(*CP*AP*CP*CP*CP*TP*AP*TP*AP*GP*TP*GP*GP*CP*TP*AP*CP*AP*GP*GP*GP*T)-3'), ... 著者 Liu, X.C, Gan, J.H, Chen, H. 登録日 2019-02-15 公開日 2019-09-25 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.71 Å) 主引用文献 Selective cadmium regulation mediated by a cooperative binding mechanism in CadR. Proc.Natl.Acad.Sci.USA, 116, 2019
2Q7U	Crystal Structure of the F plasmid TraI Relaxase Domain with the Scissile Thymidine Base and Imidodiphosphate 分子名称: IMIDO DIPHOSPHATE, MAGNESIUM ION, Protein traI, ... 著者 Lujan, S.A, Redinbo, M.R. 登録日 2007-06-07 公開日 2008-05-20 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Disrupting antibiotic resistance propagation by inhibiting the conjugative DNA relaxase. Proc.Natl.Acad.Sci.Usa, 104, 2007
8WD8	Cryo-EM structure of TtdAgo-guide DNA-target DNA complex 分子名称: Argonaute family protein, Guide DNA, MAGNESIUM ION, ... 著者 Zhuang, L. 登録日 2023-09-14 公開日 2024-01-31 最終更新日 2024-05-01 実験手法 ELECTRON MICROSCOPY (2.9 Å) 主引用文献 Molecular mechanism for target recognition, dimerization, and activation of Pyrococcus furiosus Argonaute. Mol.Cell, 84, 2024
2ITJ	Origin binding domain of the SV40 large T antigen (residues 131-259). P212121 crystal form 分子名称: large T antigen 著者 Martynowski, D, Bochkareva, E, Bochkarev, A. 登録日 2006-10-19 公開日 2006-12-12 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Structure of the origin-binding domain of simian virus 40 large T antigen bound to DNA Embo J., 25, 2006
7Z0O	Structure of transcription factor UAF in complex with TBP and 35S rRNA promoter DNA 分子名称: Histone H3, Histone H4, Non-template DNA, ... 著者 Baudin, F, Murciano, B, Fung, H.K.H, Fromm, S.A, Mueller, C.W. 登録日 2022-02-23 公開日 2022-04-27 最終更新日 2024-07-17 実験手法 ELECTRON MICROSCOPY (2.8 Å) 主引用文献 Mechanism of RNA polymerase I selection by transcription factor UAF. Sci Adv, 8, 2022
1AOI	COMPLEX BETWEEN NUCLEOSOME CORE PARTICLE (H3,H4,H2A,H2B) AND 146 BP LONG DNA FRAGMENT 分子名称: HISTONE H2A, HISTONE H2B, HISTONE H3, ... 著者 Luger, K, Maeder, A.W, Richmond, R.K, Sargent, D.F, Richmond, T.J. 登録日 1997-07-03 公開日 1998-09-30 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Crystal structure of the nucleosome core particle at 2.8 A resolution. Nature, 389, 1997
1IXC	Crystal structure of CbnR, a LysR family transcriptional regulator 分子名称: LysR-type regulatory protein 著者 Muraoka, S, Okumura, R, Ogawa, N, Miyashita, K, Senda, T. 登録日 2002-06-18 公開日 2003-06-18 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Crystal Structure of a Full-length LysR-type Transcriptional Regulator, CbnR: Unusual Combination of Two Subunit Forms and Molecular Bases for Causing and Changing DNA Bend J.Mol.Biol., 328, 2003
1IZ1	CRYSTAL STRUCTURE OF CBNR, A LYSR FAMILY TRANSCRIPTIONAL REGULATOR 分子名称: LysR-type regulatory protein 著者 Muraoka, S, Okumura, R, Ogawa, N, Miyashita, K, Senda, T. 登録日 2002-09-18 公開日 2003-05-06 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Crystal Structure of a Full-length LysR-type Transcriptional Regulator, CbnR: Unusual Combination of Two Subunit Forms and Molecular Bases for Causing and Changing DNA Bend J.Mol.Biol., 328, 2003
5K7H	Crystal structure of AibR in complex with the effector molecule isovaleryl coenzyme A 分子名称: CHLORIDE ION, Isovaleryl-coenzyme A, NICKEL (II) ION, ... 著者 Bock, T, Volz, C, Mueller, R, Blankenfeldt, W. 登録日 2016-05-26 公開日 2016-12-21 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.35 Å) 主引用文献 The AibR-isovaleryl coenzyme A regulator and its DNA binding site - a model for the regulation of alternative de novo isovaleryl coenzyme A biosynthesis in Myxococcus xanthus. Nucleic Acids Res., 45, 2017
3F1W	Crystal structure of a mutant proliferating cell nuclear antigen that blocks translesion synthesis 分子名称: Proliferating cell nuclear antigen 著者 Freudenthal, B.D, Ramaswamy, S, Washington, M.T. 登録日 2008-10-28 公開日 2008-12-23 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.901 Å) 主引用文献 Structure of a Mutant Form of Proliferating Cell Nuclear Antigen That Blocks Translesion DNA Synthesis. Biochemistry, 47, 2008
5OHQ	Crystal structure of the KOW6-KOW7 domain of human DSIF 分子名称: CHLORIDE ION, SODIUM ION, Transcription elongation factor SPT5 著者 Bernecky, C, Plitzko, J.M, Cramer, P. 登録日 2017-07-17 公開日 2017-09-13 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (1.098 Å) 主引用文献 Structure of a transcribing RNA polymerase II-DSIF complex reveals a multidentate DNA-RNA clamp. Nat. Struct. Mol. Biol., 24, 2017
2IPR	Origin binding domain of the SV40 large T antigen (residues 131-259). P21 crystal form 分子名称: large T antigen 著者 Martynowski, D, Bochkareva, E, Bochkarev, A. 登録日 2006-10-12 公開日 2006-12-12 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Structure of the origin-binding domain of simian virus 40 large T antigen bound to DNA Embo J., 25, 2006
8FTJ	Crystal structure of human NEIL1 (P2G (242K) C(delta)100) glycosylase bound to DNA duplex containing urea 分子名称: 1,2-ETHANEDIOL, DNA (5'-D(*CP*GP*TP*CP*CP*AP*UDV*GP*TP*CP*TP*AP*CP)-3'), DNA (5'-D(*TP*AP*GP*AP*CP*AP*TP*GP*GP*AP*CP*GP*G)-3'), ... 著者 Tomar, R, Sharma, P, Harp, J.M, Egli, M, Stone, M.P. 登録日 2023-01-12 公開日 2023-04-26 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Base excision repair of the N-(2-deoxy-d-erythro-pentofuranosyl)-urea lesion by the hNEIL1 glycosylase. Nucleic Acids Res., 51, 2023
5K7F	Crystal structure of apo AibR 分子名称: ACETATE ION, Transcriptional regulator, TetR family 著者 Bock, T, Volz, C, Mueller, R, Blankenfeldt, W. 登録日 2016-05-26 公開日 2016-12-21 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 The AibR-isovaleryl coenzyme A regulator and its DNA binding site - a model for the regulation of alternative de novo isovaleryl coenzyme A biosynthesis in Myxococcus xanthus. Nucleic Acids Res., 45, 2017

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