PDB: 30476 件ウェブページステータス検索Chemie searchBIRD

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8FHV	Structure of Lettuce aptamer bound to DFHBI-1T with thallium I ions 分子名称: (5Z)-5-(3,5-difluoro-4-hydroxybenzylidene)-2-methyl-3-(2,2,2-trifluoroethyl)-3,5-dihydro-4H-imidazol-4-one, Lettuce DNA aptamer, MAGNESIUM ION, ... 著者 Passalacqua, L.F.M, Ferre-D'Amare, A.R. 登録日 2022-12-15 公開日 2023-05-10 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Intricate 3D architecture of a DNA mimic of GFP. Nature, 618, 2023
5IKZ	Glycerol bound structure of Obc1, a bifunctional enzyme for quorum sensing-dependent oxalogenesis 分子名称: GLYCEROL, MAGNESIUM ION, Oxalate biosynthetic component 1 著者 Oh, J, Rhee, S. 登録日 2016-03-04 公開日 2016-06-01 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Structural Insights into an Oxalate-producing Serine Hydrolase with an Unusual Oxyanion Hole and Additional Lyase Activity J.Biol.Chem., 291, 2016
5IM2	Crystal structure of a TRAP solute binding protein from Rhodoferax ferrireducens T118 (Rfer_2570, TARGET EFI-510210) in complex with copurified benzoate 分子名称: BENZOIC ACID, Twin-arginine translocation pathway signal 著者 Vetting, M.W, Al Obaidi, N.F, Morisco, L.L, Benach, J, Koss, J, Wasserman, S.R, Gerlt, J.A, Almo, S.C, Enzyme Function Initiative (EFI) 登録日 2016-03-05 公開日 2016-03-23 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Crystal structure of a TRAP solute binding protein from Rhodoferax ferrireducens T118 (Rfer_2570, TARGET EFI-510210) in complex with copurified benzoate To be published
8FXF	Crystal structure of the coiled-coil domain of TRIM56 分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, E3 ubiquitin-protein ligase TRIM56 著者 Lou, X.H, Ma, B.B, Zhuang, Y, Li, X.C. 登録日 2023-01-24 公開日 2023-05-24 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 TRIM56 coiled-coil domain structure provides insights into its E3 ligase functions. Comput Struct Biotechnol J, 21, 2023
5I6D	Mycobacterium tuberculosis CysM in complex with the Urea-scaffold inhibitor 5 [3-(3-(p-Tolyl)ureido) benzoic acid] 分子名称: 3-{[(4-methylphenyl)carbamoyl]amino}benzoic acid, GLYCEROL, O-phosphoserine sulfhydrylase, ... 著者 Schnell, R, Maric, S, Schneider, G. 登録日 2016-02-16 公開日 2016-08-17 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (1.64 Å) 主引用文献 Inhibitors of the Cysteine Synthase CysM with Antibacterial Potency against Dormant Mycobacterium tuberculosis. J.Med.Chem., 59, 2016
8FOV	AbeH (Tryptophan-5-halogenase) bound to FAD and Cl 分子名称: ACETATE ION, CHLORIDE ION, FLAVIN-ADENINE DINUCLEOTIDE, ... 著者 Ashaduzzaman, M, Bellizzi, J.J. 登録日 2023-01-03 公開日 2023-08-30 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (1.86 Å) 主引用文献 Crystallographic and thermodynamic evidence of negative cooperativity of flavin and tryptophan binding in the flavin-dependent halogenases AbeH and BorH. Biorxiv, 2023
5I7A	Mycobacterium tuberculosis CysM in complex with the Urea-scaffold inhibitor 1 [3-(3-(3,4-Dichlorophenyl)ureido)benzoic acid] 分子名称: 3-{[(3,4-dichlorophenyl)carbamoyl]amino}benzoic acid, O-phosphoserine sulfhydrylase, PYRIDOXAL-5'-PHOSPHATE 著者 Schnell, R, Maric, S, Schneider, G. 登録日 2016-02-17 公開日 2016-08-17 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.08 Å) 主引用文献 Inhibitors of the Cysteine Synthase CysM with Antibacterial Potency against Dormant Mycobacterium tuberculosis. J.Med.Chem., 59, 2016
7V6M	Crystal structure of lacto-N-biosidase TnX from Tynzenella nexilis, lacto-N-biose complex 分子名称: Fibronectin type III domain-containing protein, beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose 著者 Yamada, C, Fushinobu, S. 登録日 2021-08-20 公開日 2022-02-09 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (1.92 Å) 主引用文献 Crystal structures of glycoside hydrolase family 136 lacto-N-biosidases from monkey gut- and human adult gut bacteria. Biosci.Biotechnol.Biochem., 86, 2022
8FZA	Class I type III preQ1 riboswitch from E. coli 分子名称: 7-DEAZA-7-AMINOMETHYL-GUANINE, MANGANESE (II) ION, PreQ1 Riboswitch (30-MER) 著者 Wedekind, J.E, Schroeder, G.M, Jenkins, J.L. 登録日 2023-01-27 公開日 2023-08-30 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Structure and function analysis of a type III preQ 1 -I riboswitch from Escherichia coli reveals direct metabolite sensing by the Shine-Dalgarno sequence. J.Biol.Chem., 299, 2023
7VWF	Human peroxisome proliferator-activated receptor (PPAR) delta ligand binding domain in complex with a synthetic agonist TIPP204 分子名称: (2S)-2-{4-butoxy-3-[({[2-fluoro-4-(trifluoromethyl)phenyl]carbonyl}amino)methyl]benzyl}butanoic acid, Peroxisome proliferator-activated receptor delta, heptyl beta-D-glucopyranoside 著者 Oyama, T, Miyachi, H. 登録日 2021-11-10 公開日 2022-02-09 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Crystal structures of the ligand-binding domain of human peroxisome proliferator-activated receptor delta in complexes with phenylpropanoic acid derivatives and a pyridine carboxylic acid derivative. Acta Crystallogr.,Sect.F, 78, 2022
5IOY	Structure of Transcriptional Regulatory Repressor Protein - EthR from Mycobacterium Tuberculosis in complex with N-(cyclopentylmethyl)pyrrolidine-1-carboxamide at 1.77A resolution 分子名称: N-(cyclopentylmethyl)pyrrolidine-1-carboxamide, SULFATE ION, TetR-family transcriptional regulatory repressor protein 著者 Blaszczyk, M, Surade, S, Nikiforov, P.O, Abell, C, Blundell, T.L. 登録日 2016-03-09 公開日 2017-03-29 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (1.77 Å) 主引用文献 Fragment-Sized EthR Inhibitors Exhibit Exceptionally Strong Ethionamide Boosting Effect in Whole-Cell Mycobacterium tuberculosis Assays. ACS Chem. Biol., 12, 2017
7V6I	Crystal structure of lacto-N-biosidase BsaX from Bifidobacterium saguini, lacto-N-biose complex 分子名称: Lacto-N-biosidase, beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose 著者 Yamada, C, Fushinobu, S. 登録日 2021-08-20 公開日 2022-02-09 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.51 Å) 主引用文献 Crystal structures of glycoside hydrolase family 136 lacto-N-biosidases from monkey gut- and human adult gut bacteria. Biosci.Biotechnol.Biochem., 86, 2022
5IPA	Structure of Transcriptional Regulatory Repressor Protein - EthR from Mycobacterium Tuberculosis in complex with (E)-3-(furan-3-yl)-1-(pyrrolidin-1-yl)prop-2-en-1-one at 1.78A resolution 分子名称: (2E)-3-(furan-3-yl)-1-(pyrrolidin-1-yl)prop-2-en-1-one, TetR-family transcriptional regulatory repressor protein 著者 Blaszczyk, M, Surade, S, Nikiforov, P.O, Abell, C, Blundell, T.L. 登録日 2016-03-09 公開日 2017-03-29 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (1.78 Å) 主引用文献 Fragment-Sized EthR Inhibitors Exhibit Exceptionally Strong Ethionamide Boosting Effect in Whole-Cell Mycobacterium tuberculosis Assays. ACS Chem. Biol., 12, 2017
7VWG	Human peroxisome proliferator-activated receptor (PPAR) delta ligand binding domain in complex with a synthetic alpha/delta dual agonist JKPL38 分子名称: (2S)-2-[[4-propoxy-3-[[[4-(trifluoromethyl)phenyl]carbonylamino]methyl]phenyl]methyl]butanoic acid, Peroxisome proliferator-activated receptor delta, heptyl beta-D-glucopyranoside 著者 Oyama, T, Miyachi, H. 登録日 2021-11-10 公開日 2022-02-09 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Crystal structures of the ligand-binding domain of human peroxisome proliferator-activated receptor delta in complexes with phenylpropanoic acid derivatives and a pyridine carboxylic acid derivative. Acta Crystallogr.,Sect.F, 78, 2022
7VC7	The structure of beta-xylosidase from Phanerochaete chrysosporium(PcBxl3) 分子名称: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, DI(HYDROXYETHYL)ETHER, ... 著者 Kojima, K, Sunagawa, N, Igarashi, K. 登録日 2021-09-01 公開日 2022-02-09 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (3.08 Å) 主引用文献 Comparison of glycoside hydrolase family 3 beta-xylosidases from basidiomycetes and ascomycetes reveals evolutionarily distinct xylan degradation systems. J.Biol.Chem., 298, 2022
5ICN	HDAC1:MTA1 in complex with inositol-6-phosphate and a novel peptide inhibitor based on histone H4 分子名称: GLY-ALA-6A0-ARG-HIS, Histone deacetylase 1, INOSITOL HEXAKISPHOSPHATE, ... 著者 Millard, C.J, Robertson, N.S, Watson, P.J, Jameson, A.G, Schwabe, J.W.R. 登録日 2016-02-23 公開日 2016-05-11 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (3.3 Å) 主引用文献 Insights into the activation mechanism of class I HDAC complexes by inositol phosphates. Nat Commun, 7, 2016
8FEW	Flavanone 4-Reductase from Sorghum bicolor-naringenin complex 分子名称: 3-deoxyanthocyanidin synthase, NARINGENIN, SULFATE ION 著者 Zhang, B, Kang, C. 登録日 2022-12-06 公開日 2023-09-20 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2.02 Å) 主引用文献 Structural Similarities and Overlapping Activities among Dihydroflavonol 4-Reductase, Flavanone 4-Reductase, and Anthocyanidin Reductase Offer Metabolic Flexibility in the Flavonoid Pathway. Int J Mol Sci, 24, 2023
7VWH	human peroxisome proliferator-activated receptor (PPAR) delta ligand binding domain in complex with a synthetic agonist JKPL39 分子名称: (2S)-2-[[4-hexoxy-3-[[[4-(trifluoromethyl)phenyl]carbonylamino]methyl]phenyl]methyl]butanoic acid, Peroxisome proliferator-activated receptor delta, heptyl beta-D-glucopyranoside 著者 Oyama, T, Miyachi, H. 登録日 2021-11-10 公開日 2022-02-09 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Crystal structures of the ligand-binding domain of human peroxisome proliferator-activated receptor delta in complexes with phenylpropanoic acid derivatives and a pyridine carboxylic acid derivative. Acta Crystallogr.,Sect.F, 78, 2022
8FII	Wild type APOBEC3A in complex with TT(FdZ)-hairpin inhibitor (crystal form 1) 分子名称: DNA (5'-D(P*GP*CP*GP*CP*TP*TP*(UFP)P*GP*CP*GP*C)-3'), DNA dC->dU-editing enzyme APOBEC-3A, PHOSPHATE ION, ... 著者 Harjes, S, Jameson, G.B, Harjes, E, Filichev, V.V, Kurup, H.M. 登録日 2022-12-16 公開日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.94 Å) 主引用文献 DNA-based inhibitors restrict mutagenic activity of APOBEC3 in cells To Be Published
7VZ2	Crystal structure of chromodomain of Arabidopsis LHP1 分子名称: Chromo domain-containing protein LHP1, UNKNOWN ATOM OR ION 著者 Liu, Y, Min, J. 登録日 2021-11-15 公開日 2022-02-02 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Structural basis for the recognition of methylated histone H3 by the Arabidopsis LHP1 chromodomain. J.Biol.Chem., 298, 2022
8FIJ	Wild type APOBEC3A in complex with TT(FdZ)-hairpin inhibitor (crystal form 2) 分子名称: DNA (5'-D(*GP*CP*GP*CP*TP*TP*(UFP)P*GP*CP*GP*CP*T)-3'), DNA dC->dU-editing enzyme APOBEC-3A, PHOSPHATE ION, ... 著者 Harjes, S, Jameson, G.B, Harjes, E, Filichev, V.V, Kurup, H.M. 登録日 2022-12-16 公開日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.799 Å) 主引用文献 DNA-based inhibitors restrict mutagenic activity of APOBEC3 in cells To Be Published
8FIM	Structure of APOBEC3A (E72A inactive mutant) in complex with TTC-hairpin DNA substrate 分子名称: CHLORIDE ION, DNA (5'-D(*TP*GP*CP*GP*CP*TP*TP*CP*GP*CP*GP*CP*T)-3'), DNA dC->dU-editing enzyme APOBEC-3A, ... 著者 Harjes, S, Jameson, G.B, Harjes, E, Filichev, V.V, Kurup, H.M. 登録日 2022-12-16 公開日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.22 Å) 主引用文献 DNA-based inhibitors restrict mutagenic activity of APOBEC3 in cells To Be Published
7VWE	Human peroxisome proliferator-activated receptor (PPAR) delta ligand binding domain in complex with a synthetic partial agonist JK122 分子名称: 5-[4-butoxy-3-[[[2-fluoranyl-4-(trifluoromethyl)phenyl]carbonylamino]methyl]phenyl]-4,6-dimethyl-pyridine-3-carboxylic acid, Peroxisome proliferator-activated receptor delta, heptyl beta-D-glucopyranoside 著者 Oyama, T, Miyachi, H. 登録日 2021-11-10 公開日 2022-02-09 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Crystal structures of the ligand-binding domain of human peroxisome proliferator-activated receptor delta in complexes with phenylpropanoic acid derivatives and a pyridine carboxylic acid derivative. Acta Crystallogr.,Sect.F, 78, 2022
7VJZ	Crystal Structure of SARS-CoV-2 Mpro at 1.90 A resolution-7 分子名称: 3C-like proteinase 著者 DeMirci, H, Tokay, N. 登録日 2021-09-29 公開日 2022-01-26 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Case Study of High-Throughput Drug Screening and Remote Data Collection for SARS-CoV-2 Main Protease by Using Serial Femtosecond X-ray Crystallography Crystals, 11, 2021
7VK7	Crystal Structure of SARS-CoV-2 Mpro at 2.4 A resolution-11 分子名称: 3C-like proteinase 著者 DeMirci, H, Dag, C. 登録日 2021-09-29 公開日 2022-01-26 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Case Study of High-Throughput Drug Screening and Remote Data Collection for SARS-CoV-2 Main Protease by Using Serial Femtosecond X-ray Crystallography Crystals, 11, 2021

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