Loading
PDBj
メニューPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

7U81
DownloadVisualize
BU of 7u81 by Molmil
Human DNA polymerase eta-DNA-dGMPNPP ternary mismatch complex in 0.5 mM Mn2+ for 600s
分子名称: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]guanosine, DNA (5'-D(*AP*GP*CP*GP*TP*CP*AP*T)-3'), DNA (5'-D(*CP*AP*TP*TP*AP*TP*GP*AP*CP*GP*CP*T)-3'), ...
著者Chang, C, Gao, Y.
登録日2022-03-07
公開日2022-05-04
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献In crystallo observation of three metal ion promoted DNA polymerase misincorporation.
Nat Commun, 13, 2022
5WU0
DownloadVisualize
BU of 5wu0 by Molmil
Crystal structure of C. perfringens iota-like enterotoxin CPILE-a with NADH
分子名称: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, Binary enterotoxin of Clostridium perfringens component a
著者Toniti, W, Yoshida, T, Tsurumura, T, Irikura, D, Tsuge, H.
登録日2016-12-15
公開日2017-03-01
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.251 Å)
主引用文献Crystal structure and structure-based mutagenesis of actin-specific ADP-ribosylating toxin CPILE-a as novel enterotoxin
PLoS ONE, 12, 2017
7U7B
DownloadVisualize
BU of 7u7b by Molmil
Human DNA polymerase eta-DNA ternary mismatch complex:reaction with 1.0 mM Mg2+ for 250s
分子名称: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, DIPHOSPHATE, DNA (5'-D(*AP*GP*CP*GP*TP*CP*AP*TP*G)-3'), ...
著者Chang, C, Gao, Y.
登録日2022-03-07
公開日2022-05-04
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.58 Å)
主引用文献In crystallo observation of three metal ion promoted DNA polymerase misincorporation.
Nat Commun, 13, 2022
7U7S
DownloadVisualize
BU of 7u7s by Molmil
Human DNA polymerase eta-DNA-dGMPNPP ternary mismatch complex in 0.025 mM Mg2+ for 600s
分子名称: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]guanosine, DNA (5'-D(*AP*GP*CP*GP*TP*CP*AP*T)-3'), DNA (5'-D(*CP*AP*TP*TP*AP*TP*GP*AP*CP*GP*CP*T)-3'), ...
著者Chang, C, Gao, Y.
登録日2022-03-07
公開日2022-05-04
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献In crystallo observation of three metal ion promoted DNA polymerase misincorporation.
Nat Commun, 13, 2022
7U84
DownloadVisualize
BU of 7u84 by Molmil
Human DNA polymerase eta-DNA-dGMPNPP ternary mismatch complex in 6.0 mM Mn2+ for 600s
分子名称: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]guanosine, DNA (5'-D(*AP*GP*CP*GP*TP*CP*AP*T)-3'), DNA (5'-D(*CP*AP*TP*TP*AP*TP*GP*AP*CP*GP*CP*T)-3'), ...
著者Chang, C, Gao, Y.
登録日2022-03-07
公開日2022-05-04
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.71 Å)
主引用文献In crystallo observation of three metal ion promoted DNA polymerase misincorporation.
Nat Commun, 13, 2022
7U73
DownloadVisualize
BU of 7u73 by Molmil
Human DNA polymerase eta-DNA ternary mismatch complex:reaction with 0.5 mM Mn2+ for 1800s
分子名称: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, DNA (5'-D(*AP*GP*CP*GP*TP*CP*AP*T)-3'), DNA (5'-D(*CP*AP*TP*TP*AP*TP*GP*AP*CP*GP*CP*T)-3'), ...
著者Chang, C, Gao, Y.
登録日2022-03-07
公開日2022-05-04
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.56 Å)
主引用文献In crystallo observation of three metal ion promoted DNA polymerase misincorporation.
Nat Commun, 13, 2022
7U77
DownloadVisualize
BU of 7u77 by Molmil
Human DNA polymerase eta-DNA ternary mismatch complex:reaction with 1.0 mM Mg2+ for 40s
分子名称: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(*AP*GP*CP*GP*TP*CP*AP*T)-3'), ...
著者Chang, C, Gao, Y.
登録日2022-03-07
公開日2022-05-04
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.58 Å)
主引用文献In crystallo observation of three metal ion promoted DNA polymerase misincorporation.
Nat Commun, 13, 2022
7U7G
DownloadVisualize
BU of 7u7g by Molmil
Human DNA polymerase eta-DNA ternary mismatch complex:reaction with 10.0 mM Mn2+ for 120s
分子名称: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, DIPHOSPHATE, DNA (5'-D(*AP*GP*CP*GP*TP*CP*AP*TP*G)-3'), ...
著者Chang, C, Gao, Y.
登録日2022-03-07
公開日2022-05-04
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.77 Å)
主引用文献In crystallo observation of three metal ion promoted DNA polymerase misincorporation.
Nat Commun, 13, 2022
7U7U
DownloadVisualize
BU of 7u7u by Molmil
Human DNA polymerase eta-DNA-dGMPNPP ternary mismatch complex in 0.1 mM Mg2+ for 600s
分子名称: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]guanosine, DNA (5'-D(*AP*GP*CP*GP*TP*CP*AP*T)-3'), DNA (5'-D(*CP*AP*TP*TP*AP*TP*GP*AP*CP*GP*CP*T)-3'), ...
著者Chang, C, Gao, Y.
登録日2022-03-07
公開日2022-05-04
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.54 Å)
主引用文献In crystallo observation of three metal ion promoted DNA polymerase misincorporation.
Nat Commun, 13, 2022
1JO7
DownloadVisualize
BU of 1jo7 by Molmil
Solution Structure of Influenza A Virus Promoter
分子名称: Influenza A virus promoter RNA
著者Bae, S.-H, Cheong, H.-K, Lee, J.-H, Cheong, C, Kainosho, M, Choi, B.-S.
登録日2001-07-27
公開日2001-09-19
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Structural features of an influenza virus promoter and their implications for viral RNA synthesis.
Proc.Natl.Acad.Sci.USA, 98, 2001
2LKP
DownloadVisualize
BU of 2lkp by Molmil
solution structure of apo-NmtR
分子名称: HTH-type transcriptional regulator NmtR
著者Lee, C, Giedroc, D.
登録日2011-10-18
公開日2012-04-18
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Solution Structure of Mycobacterium tuberculosis NmtR in the Apo State: Insights into Ni(II)-Mediated Allostery.
Biochemistry, 51, 2012
2LP1
DownloadVisualize
BU of 2lp1 by Molmil
The solution NMR structure of the transmembrane C-terminal domain of the amyloid precursor protein (C99)
分子名称: C99
著者Barrett, P.J, Song, Y, Van Horn, W.D, Hustedt, E.J, Schafer, J.M, Hadziselimovic, A, Beel, A.J, Sanders, C.R.
登録日2012-01-30
公開日2012-06-06
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献The amyloid precursor protein has a flexible transmembrane domain and binds cholesterol.
Science, 336, 2012
5X14
DownloadVisualize
BU of 5x14 by Molmil
Crystal structure of Bacillus subtilis PadR in complex with ferulic acid
分子名称: 3-(4-HYDROXY-3-METHOXYPHENYL)-2-PROPENOIC ACID, GLYCEROL, Transcriptional regulator
著者Park, S.C, Kwak, Y.M, Song, W.S, Hong, M, Yoon, S.I.
登録日2017-01-24
公開日2017-11-22
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.68 Å)
主引用文献Structural basis of effector and operator recognition by the phenolic acid-responsive transcriptional regulator PadR
Nucleic Acids Res., 45, 2017
7K2H
DownloadVisualize
BU of 7k2h by Molmil
Kelch domain of human KEAP1 bound to Nrf2 cyclic peptide, c[GDPETGE]
分子名称: GLY-ASP-PRO-GLU-THR-GLY-GLU, Kelch-like ECH-associated protein 1
著者Muellers, S.N, Allen, K.N.
登録日2020-09-08
公開日2021-04-07
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.09 Å)
主引用文献Recapitulating the Binding Affinity of Nrf2 for KEAP1 in a Cyclic Heptapeptide, Guided by NMR, X-ray Crystallography, and Machine Learning.
J.Am.Chem.Soc., 143, 2021
1JJR
DownloadVisualize
BU of 1jjr by Molmil
The Three-Dimensional Structure of the C-terminal DNA Binding Domain of Human Ku70
分子名称: THYROID AUTOANTIGEN
著者Zhang, Z, Chen, Y.
登録日2001-07-09
公開日2001-10-03
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献The three-dimensional structure of the C-terminal DNA-binding domain of human Ku70.
J.Biol.Chem., 276, 2001
1D1B
DownloadVisualize
BU of 1d1b by Molmil
DICTYOSTELIUM MYOSIN S1DC (MOTOR DOMAIN FRAGMENT) COMPLEXED WITH O,P-DINITROPHENYL AMINOPROPYLDIPHOSPHATE BERYLLIUM TRIFLUORIDE.
分子名称: MAGNESIUM ION, MYOSIN, O,P-DINITROPHENYL AMINOPROPYLDIPHOSPHATE BERYLLIUM TRIFLUORIDE
著者Gulick, A.M, Bauer, C.B, Thoden, J.B, Pate, E, Yount, R.G, Rayment, I.
登録日1999-09-15
公開日2000-01-12
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献X-ray structures of the Dictyostelium discoideum myosin motor domain with six non-nucleotide analogs.
J.Biol.Chem., 275, 2000
7K2G
DownloadVisualize
BU of 7k2g by Molmil
Kelch domain of human KEAP1 bound to Nrf2 cyclic peptide, c[GDEEAGE]
分子名称: GLY-ASP-GLU-GLU-ALA-GLY-GLU, Kelch-like ECH-associated protein 1
著者Muellers, S.N, Allen, K.N.
登録日2020-09-08
公開日2021-04-07
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Recapitulating the Binding Affinity of Nrf2 for KEAP1 in a Cyclic Heptapeptide, Guided by NMR, X-ray Crystallography, and Machine Learning.
J.Am.Chem.Soc., 143, 2021
1CO9
DownloadVisualize
BU of 1co9 by Molmil
RECOMBINANT SPERM WHALE MYOGLOBIN L104V MUTANT (MET)
分子名称: PROTEIN (MYOGLOBIN), PROTOPORPHYRIN IX CONTAINING FE, SULFATE ION
著者Liong, E.C, Phillips Jr, G.N.
登録日1999-06-07
公開日1999-06-14
最終更新日2023-08-09
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Waterproofing the heme pocket. Role of proximal amino acid side chains in preventing hemin loss from myoglobin.
J.Biol.Chem., 276, 2001
7K2Q
DownloadVisualize
BU of 7k2q by Molmil
Kelch domain of human KEAP1 bound to Nrf2 cyclic peptide, c[Ahx-DPETGE]
分子名称: ACA-ASP-PRO-GLU-THR-GLY-GLU, Kelch-like ECH-associated protein 1
著者Muellers, S.N, Allen, K.N.
登録日2020-09-08
公開日2021-04-07
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (2.37 Å)
主引用文献Recapitulating the Binding Affinity of Nrf2 for KEAP1 in a Cyclic Heptapeptide, Guided by NMR, X-ray Crystallography, and Machine Learning.
J.Am.Chem.Soc., 143, 2021
8ZJ2
DownloadVisualize
BU of 8zj2 by Molmil
Cryo-EM structure of the RhoG/DOCK5/ELMO1/Rac1 complex
分子名称: Dedicator of cytokinesis protein 5, Engulfment and cell motility protein 1, GUANOSINE-5'-TRIPHOSPHATE, ...
著者Kukimoto-Niino, M, Katsura, K, Ishizuka-Katsura, Y, Mishima-Tsumagari, C, Yonemochi, M, Inoue, M, Nakagawa, R, Kaushik, R, Zhang, K.Y.J, Shirouzu, M.
登録日2024-05-14
公開日2024-06-26
最終更新日2024-07-17
実験手法ELECTRON MICROSCOPY (4.66 Å)
主引用文献RhoG facilitates a conformational transition in the guanine nucleotide exchange factor complex DOCK5/ELMO1 to an open state.
J.Biol.Chem., 300, 2024
2C06
DownloadVisualize
BU of 2c06 by Molmil
NMR-based model of the complex of the toxin Kid and a 5-nucleotide substrate RNA fragment (AUACA)
分子名称: 5'-R(*AP*UP*AP*CP*AP)-3', KID TOXIN PROTEIN
著者Kamphuis, M.B, Bonvin, A.M.J.J, Monti, M.C, Lemonnier, M, Munoz-Gomez, A, Van Den Heuvel, R.H.H, Diaz-Orejas, R, Boelens, R.
登録日2005-08-25
公開日2006-02-08
最終更新日2024-06-19
実験手法SOLUTION NMR
主引用文献Model for RNA Binding and the Catalytic Site of the Rnase Kid of the Bacterial Pard Toxin-Antitoxin System.
J.Mol.Biol., 357, 2006
2WVT
DownloadVisualize
BU of 2wvt by Molmil
Crystal structure of an alpha-L-fucosidase GH29 from Bacteroides thetaiotaomicron in complex with a novel iminosugar fucosidase inhibitor
分子名称: (2S,3R,5R,6S)-3,4,5-TRIHYDROXY-2,6-BIS(HYDROXYMETHYL)PIPERIDINIUM, ALPHA-L-FUCOSIDASE, GLYCEROL, ...
著者Lammerts van Bueren, A, Ardevol, A, Fayers-Kerr, J, Luo, B, Zhang, Y, Sollogoub, M, Bleriot, Y, Rovira, C, Davies, G.J.
登録日2009-10-20
公開日2010-02-02
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Analysis of the Reaction Coordinate of Alpha-L-Fucosidases: A Combined Structural and Quantum Mechanical Approach.
J.Am.Chem.Soc., 132, 2010
5MFC
DownloadVisualize
BU of 5mfc by Molmil
Designed armadillo repeat protein YIIIM5AII in complex with (KR)4-GFP
分子名称: (KR)4-Green fluorescent protein,Green fluorescent protein, ACETATE ION, YIIIM5AII
著者Hansen, S, Kiefer, J, Madhurantakam, C, Mittl, P, Plueckthun, A.
登録日2016-11-18
公開日2017-07-19
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Structures of designed armadillo repeat proteins binding to peptides fused to globular domains.
Protein Sci., 26, 2017
7JYZ
DownloadVisualize
BU of 7jyz by Molmil
Solution NMR structure and dynamics of human Brd3 ET in complex with MLV IN CTD
分子名称: Bromodomain-containing protein 3, Integrase
著者Aiyer, S, Liu, G, Swapna, G.V.T, Hao, J, Ma, L.C, Roth, M.J, Montelione, G.T.
登録日2020-09-01
公開日2021-06-23
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献A common binding motif in the ET domain of BRD3 forms polymorphic structural interfaces with host and viral proteins.
Structure, 29, 2021
2WRV
DownloadVisualize
BU of 2wrv by Molmil
Semi-synthetic highly active analogue of human insulin NMeHisB26-DTI- NH2
分子名称: ACETATE ION, INSULIN A CHAIN, INSULIN B CHAIN
著者Brzozowski, A.M, Jiracek, J, Zakova, L, Antolikova, E, Watson, C.J, Turkenburg, J.P, Dodson, G.G.
登録日2009-09-02
公開日2010-02-09
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Implications for the Active Form of Human Insulin Based on the Structural Convergence of Highly Active Hormone Analogues.
Proc.Natl.Acad.Sci.USA, 107, 2010

238582

件を2025-07-09に公開中

PDB statisticsPDBj update infoContact PDBjnumon