PDB: 47720 件ウェブページステータス検索Chemie searchBIRD

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5LMT	Structure of bacterial 30S-IF1-IF3-mRNA-tRNA translation pre-initiation complex(state-3) 分子名称: 16S ribosomal RNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... 著者 Hussain, T, Llacer, J.L, Wimberly, B.T, Ramakrishnan, V. 登録日 2016-08-01 公開日 2016-10-05 最終更新日 2019-12-11 実験手法 ELECTRON MICROSCOPY (4.15 Å) 主引用文献 Large-Scale Movements of IF3 and tRNA during Bacterial Translation Initiation. Cell, 167, 2016
4V7V	Crystal structure of the E. coli ribosome bound to clindamycin. 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Dunkle, J.A, Xiong, L, Mankin, A.S, Cate, J.H.D. 登録日 2010-08-16 公開日 2014-07-09 最終更新日 2014-12-10 実験手法 X-RAY DIFFRACTION (3.2891 Å) 主引用文献 Structures of the Escherichia coli ribosome with antibiotics bound near the peptidyl transferase center explain spectra of drug action. Proc.Natl.Acad.Sci.USA, 107, 2010
4V5H	E.Coli 70s Ribosome Stalled During Translation Of Tnac Leader Peptide. 分子名称: 16S RIBOSOMAL RNA, 23S RIBOSOMAL RNA, 30S RIBOSOMAL PROTEIN S10, ... 著者 Seidelt, B, Innis, C.A, Wilson, D.N, Gartmann, M, Armache, J, Villa, E, Trabuco, L.G, Becker, T, Mielke, T, Schulten, K, Steitz, T.A, Beckmann, R. 登録日 2009-10-26 公開日 2014-07-09 最終更新日 2024-05-08 実験手法 ELECTRON MICROSCOPY (5.8 Å) 主引用文献 Structural insight into nascent polypeptide chain-mediated translational stalling. Science, 326, 2009
4V9D	Structures of the bacterial ribosome in classical and hybrid states of tRNA binding 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Dunkle, J.A, Wang, L, Feldman, M.B, Pulk, A, Chen, V.B, Kapral, G.J, Noeske, J, Richardson, J.S, Blanchard, S.C, Cate, J.H.D. 登録日 2012-07-31 公開日 2014-07-09 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Structures of the bacterial ribosome in classical and hybrid states of tRNA binding. Science, 332, 2011
4V6Q	Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Agirrezabala, X, Liao, H, Schreiner, E, Fu, J, Ortiz-Meoz, R.F, Schulten, K, Green, R, Frank, J. 登録日 2011-12-08 公開日 2014-07-09 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (11.5 Å) 主引用文献 Structural characterization of mRNA-tRNA translocation intermediates. Proc.Natl.Acad.Sci.USA, 109, 2012
4V73	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre5a) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Blau, C, Bock, L.V, Schroder, G.F, Davydov, I, Fischer, N, Stark, H, Rodnina, M.V, Vaiana, A.C, Grubmuller, H. 登録日 2013-10-14 公開日 2014-07-09 最終更新日 2019-12-18 実験手法 ELECTRON MICROSCOPY (15 Å) 主引用文献 Energy barriers and driving forces in tRNA translocation through the ribosome. Nat.Struct.Mol.Biol., 20, 2013
8XT1	Cryo-EM structure of the human 39S mitoribosome with 5uM Tigecycline 分子名称: 16s rRNA, 39S ribosomal protein L22, mitochondrial, ... 著者 Li, X, Wang, M, Cheng, J. 登録日 2024-01-10 公開日 2024-07-10 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Structural basis for differential inhibition of eukaryotic ribosomes by tigecycline. Nat Commun, 15, 2024
8XT3	Cryo-EM structure of the human 39S mitoribosome with 10uM Tigecycline 分子名称: 16s rRNA, 39S ribosomal protein L22, mitochondrial, ... 著者 Li, X, Wang, M, Cheng, J. 登録日 2024-01-10 公開日 2024-07-10 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Structural basis for differential inhibition of eukaryotic ribosomes by tigecycline. Nat Commun, 15, 2024
5LJ3	Structure of the core of the yeast spliceosome immediately after branching 分子名称: CEF1, CLF1, CWC15, ... 著者 Galej, W.P, Wilkinson, M.F, Fica, S.M, Oubridge, C, Newman, A.J, Nagai, K. 登録日 2016-07-17 公開日 2016-08-03 最終更新日 2019-10-23 実験手法 ELECTRON MICROSCOPY (3.8 Å) 主引用文献 Cryo-EM structure of the spliceosome immediately after branching. Nature, 537, 2016
8XT0	Cryo-EM structure of the human 55S mitoribosome with 5um Tigecycline 分子名称: 12s rRNA, 16s rRNA, 39S ribosomal protein L22, ... 著者 Li, X, Wang, M, Cheng, J. 登録日 2024-01-10 公開日 2024-07-10 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Structural basis for differential inhibition of eukaryotic ribosomes by tigecycline. Nat Commun, 15, 2024
8XT2	Cryo-EM structure of the human 55S mitoribosome with 10uM Tigecycline 分子名称: 12s rRNA, 16s rRNA, 39S ribosomal protein L22, ... 著者 Li, X, Wang, M, Cheng, J. 登録日 2024-01-10 公開日 2024-07-10 実験手法 ELECTRON MICROSCOPY (3.3 Å) 主引用文献 Structural basis for differential inhibition of eukaryotic ribosomes by tigecycline. Nat Commun, 15, 2024
8XMD	Pre-translocated Pol IV transcription elongation complex 分子名称: DNA-directed RNA polymerase IV subunit 1, DNA-directed RNA polymerase IV subunit 7, DNA-directed RNA polymerases II and IV subunit 5A, ... 著者 Huang, K, Fang, C.L, Zhang, Y. 登録日 2023-12-27 公開日 2024-07-24 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Transcription of the Plant RNA polymerase IV is prone to backtracking To Be Published
5LMN	Structure of bacterial 30S-IF1-IF3-mRNA translation pre-initiation complex (state-1A) 分子名称: 16S ribosomal RNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... 著者 Hussain, T, Llacer, J.L, Wimberly, B.T, Ramakrishnan, V. 登録日 2016-08-01 公開日 2016-10-05 最終更新日 2019-10-02 実験手法 ELECTRON MICROSCOPY (3.55 Å) 主引用文献 Large-Scale Movements of IF3 and tRNA during Bacterial Translation Initiation. Cell, 167, 2016
8XME	Backtracked Pol IV transcription elongation complex 分子名称: DNA-directed RNA polymerase IV subunit 1, DNA-directed RNA polymerase IV subunit 7, DNA-directed RNA polymerases II and IV subunit 5A, ... 著者 Huang, K, Fang, C.L, Zhang, Y. 登録日 2023-12-27 公開日 2024-07-24 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Transcription of the Plant RNA polymerase IV is prone to backtracking To Be Published
8XMB	NTP-bound Pol IV transcription elongation complex 分子名称: DNA-directed RNA polymerase IV subunit 1, DNA-directed RNA polymerase IV subunit 7, DNA-directed RNA polymerases II and IV subunit 5A, ... 著者 Huang, K, Fang, C.L, Zhang, Y. 登録日 2023-12-27 公開日 2024-07-24 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Transcription of the Plant RNA polymerase IV is prone to backtracking To Be Published
8XMC	Post-translocated Pol IV transcription elongation complex 分子名称: DNA-directed RNA polymerase IV subunit 1, DNA-directed RNA polymerase IV subunit 7, DNA-directed RNA polymerases II and IV subunit 5A, ... 著者 Huang, K, Fang, C.L, Zhang, Y. 登録日 2023-12-27 公開日 2024-07-24 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Transcription of the Plant RNA polymerase IV is prone to backtracking To Be Published
5LJO	E. coli BAM complex (BamABCDE) by cryoEM 分子名称: Outer membrane protein assembly factor BamA, Outer membrane protein assembly factor BamB, Outer membrane protein assembly factor BamC, ... 著者 Iadanza, M.G, Ranson, N.A, Radford, S.E, Higgins, A.J, Schffrin, B, Calabrese, A.N, Ashcroft, A.E, Brockwell, D.J. 登録日 2016-07-19 公開日 2016-10-12 最終更新日 2024-05-08 実験手法 ELECTRON MICROSCOPY (4.9 Å) 主引用文献 Lateral opening in the intact beta-barrel assembly machinery captured by cryo-EM. Nat Commun, 7, 2016
5LMS	Structure of bacterial 30S-IF1-IF3-mRNA-tRNA translation pre-initiation complex(state-2C) 分子名称: 16S rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... 著者 Hussain, T, Llacer, J.L, Wimberly, B.T, Ramakrishnan, V. 登録日 2016-08-01 公開日 2016-10-05 最終更新日 2019-10-02 実験手法 ELECTRON MICROSCOPY (5.1 Å) 主引用文献 Large-Scale Movements of IF3 and tRNA during Bacterial Translation Initiation. Cell, 167, 2016
5LEJ	The Transcriptional Regulator PrfA from Listeria Monocytogenes in complex with a 30-bp operator PrfA-box motif 分子名称: DNA (30-MER), Listeriolysin regulatory protein 著者 Hall, M, Grundstrom, C, Begum, A, Lindberg, M, Sauer, U.H, Almqvist, F, Johansson, J, Sauer-Eriksson, A.E. 登録日 2016-06-29 公開日 2016-12-07 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Structural basis for glutathione-mediated activation of the virulence regulatory protein PrfA in Listeria. Proc. Natl. Acad. Sci. U.S.A., 113, 2016
8Y0W	dormant ribosome with eIF5A, eEF2 and SERBP1 分子名称: 18S rRNA, 28S rRNA, 40S ribosomal protein S10, ... 著者 Du, M, Zeng, F. 登録日 2024-01-23 公開日 2024-02-07 最終更新日 2024-08-21 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Implication of Stm1 in the protection of eIF5A, eEF2 and tRNA through dormant ribosomes. Front Mol Biosci, 11, 2024
5LMR	Structure of bacterial 30S-IF1-IF3-mRNA-tRNA translation pre-initiation complex(state-2B) 分子名称: 16S rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... 著者 Hussain, T, Llacer, J.L, Wimberly, B.T, Ramakrishnan, V. 登録日 2016-08-01 公開日 2016-10-05 最終更新日 2019-10-02 実験手法 ELECTRON MICROSCOPY (4.45 Å) 主引用文献 Large-Scale Movements of IF3 and tRNA during Bacterial Translation Initiation. Cell, 167, 2016
5LRS	The Transcriptional Regulator PrfA from Listeria Monocytogenes in complex with glutathione and a 30-bp operator PrfA-box motif 分子名称: DNA (30-MER), GLUTATHIONE, Listeriolysin positive regulatory factor A 著者 Hall, M, Grundstrom, C, Begum, A, Lindberg, M, Sauer, U.H, Almqvist, F, Johansson, J, Sauer-Eriksson, A.E. 登録日 2016-08-19 公開日 2016-12-07 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Structural basis for glutathione-mediated activation of the virulence regulatory protein PrfA in Listeria. Proc. Natl. Acad. Sci. U.S.A., 113, 2016
5IB7	Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Rozov, A, Demeshkina, N, Yusupov, M, Yusupova, G. 登録日 2016-02-22 公開日 2016-05-25 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.99 Å) 主引用文献 The ribosome prohibits the GU wobble geometry at the first position of the codon-anticodon helix. Nucleic Acids Res., 44, 2016
4LT8	Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-G on the Ribosome 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Maehigashi, T, Dunkle, J.A, Dunham, C.M. 登録日 2013-07-23 公開日 2014-08-06 最終更新日 2014-12-10 実験手法 X-RAY DIFFRACTION (3.14000177 Å) 主引用文献 Structural insights into +1 frameshifting promoted by expanded or modification-deficient anticodon stem loops. Proc.Natl.Acad.Sci.USA, 111, 2014
5EL7	Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Rozov, A, Demeshkina, N, Khusainov, I, Yusupov, M, Yusupova, G. 登録日 2015-11-04 公開日 2016-01-27 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (3.15 Å) 主引用文献 Novel base-pairing interactions at the tRNA wobble position crucial for accurate reading of the genetic code. Nat Commun, 7, 2016

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