Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5XR0
DownloadVisualize
BU of 5xr0 by Molmil
Crystal structure of Notched-fin eelpout type III antifreeze protein A20T mutant (NFE6, AFP), P21 form
分子名称: Ice-structuring protein
著者Adachi, M, Shimizu, R, Shibazaki, C, Kondo, H, Tsuda, S.
登録日2017-06-07
公開日2018-05-16
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (0.98 Å)
主引用文献Polypentagonal ice-like water networks emerge solely in an activity-improved variant of ice-binding protein
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
2G58
DownloadVisualize
BU of 2g58 by Molmil
Crystal structure of a complex of phospholipase A2 with a designed peptide inhibitor Dehydro-Ile-Ala-Arg-Ser at 0.98 A resolution
分子名称: (PHQ)IARS, Phospholipase A2 VRV-PL-VIIIa, SULFATE ION
著者Prem Kumar, R, Singh, N, Somvanshi, R.K, Ethayathulla, A.S, Dey, S, Sharma, S, Kaur, P, Perbandt, M, Betzel, C, Singh, T.P.
登録日2006-02-22
公開日2006-03-28
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (0.98 Å)
主引用文献Crystal structure of a complex of phospholipase A2 with a designed peptide inhibitor Dehydro-Ile-Ala-Arg-Ser at 0.98 A resolution
To be Published
4YEO
DownloadVisualize
BU of 4yeo by Molmil
Triclinic HEWL co-crystallised with cisplatin, studied at a data collection temperature of 150K - new refinement
分子名称: 1,2-ETHANEDIOL, ACETATE ION, Cisplatin, ...
著者Shabalin, I.G, Dauter, Z, Jaskolski, M, Minor, W, Wlodawer, A.
登録日2015-02-24
公開日2015-03-04
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (0.98 Å)
主引用文献Crystallography and chemistry should always go together: a cautionary tale of protein complexes with cisplatin and carboplatin.
Acta Crystallogr.,Sect.D, 71, 2015
7BCU
DownloadVisualize
BU of 7bcu by Molmil
The adduct of NAMI-A with Hen Egg White Lysozyme at 1.5 hours.
分子名称: CHLORIDE ION, DIMETHYL SULFOXIDE, IMIDAZOLE, ...
著者Chiniadis, L, Giastas, P, Bratsos, I, Papakyriakou, A.
登録日2020-12-21
公開日2021-07-28
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (0.98 Å)
主引用文献Insights into the Protein Ruthenation Mechanism by Antimetastatic Metallodrugs: High-Resolution X-ray Structures of the Adduct Formed between Hen Egg-White Lysozyme and NAMI-A at Various Time Points.
Inorg.Chem., 60, 2021
5SAR
DownloadVisualize
BU of 5sar by Molmil
Endothiapepsin in complex with compound FU290-1
分子名称: (1,4-phenylene)bis(methylene) dicarbamimidothioate, Endothiapepsin
著者Wollenhaupt, J, Metz, A, Messini, N, Barthel, T, Klebe, G, Weiss, M.S.
登録日2021-05-28
公開日2021-09-01
最終更新日2021-09-29
実験手法X-RAY DIFFRACTION (0.98 Å)
主引用文献Frag4Lead: growing crystallographic fragment hits by catalog using fragment-guided template docking.
Acta Crystallogr D Struct Biol, 77, 2021
7AVE
DownloadVisualize
BU of 7ave by Molmil
Perdeuterated refolded hen egg-white lysozyme at 100 K
分子名称: ACETATE ION, Lysozyme C, NITRATE ION
著者Ramos, J, Laux, V, Haertlein, M, Erba Boeri, E, Forsyth, V.T, Larsen, S, Mossou, E, Langkilde, A.E.
登録日2020-11-05
公開日2021-05-12
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (0.98 Å)
主引用文献Structural insights into protein folding, stability and activity using in vivo perdeuteration of hen egg-white lysozyme.
Iucrj, 8, 2021
1GHG
DownloadVisualize
BU of 1ghg by Molmil
CRYSTAL STRUCTURE OF VANCOMYCIN AGLYCON
分子名称: ACETIC ACID, DIMETHYL SULFOXIDE, VANCOMYCIN AGLYCON
著者Kaplan, J, Korty, B.D, Axelsen, P.H, Loll, P.J.
登録日2000-12-13
公開日2001-02-12
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (0.98 Å)
主引用文献The Role of Sugar Residues in Molecular Recognition by Vancomycin
J.Med.Chem., 44, 2001
4HGU
DownloadVisualize
BU of 4hgu by Molmil
Crystal Structure of Galleria mellonella Silk Protease Inhibitor 2
分子名称: SODIUM ION, Silk protease inhibitor 2
著者Krzywda, S, Jaskolski, M, Dvornyk, A, Kludkiewicz, B, Grzelak, K, Zagorski, W, Bal, W, Kopera, E.
登録日2012-10-08
公開日2013-10-09
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (0.98 Å)
主引用文献Atomic resolution structure of a protein prepared by non-enzymatic His-tag removal. Crystallographic and NMR study of GmSPI-2 inhibitor.
Plos One, 9, 2014
1TQG
DownloadVisualize
BU of 1tqg by Molmil
CheA phosphotransferase domain from Thermotoga maritima
分子名称: Chemotaxis protein cheA
著者Quezada, C.M, Gradinaru, C, Simon, M.I, Bilwes, A.M, Crane, B.R.
登録日2004-06-17
公開日2004-09-07
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (0.98 Å)
主引用文献Helical Shifts Generate Two Distinct Conformers in the Atomic Resolution Structure of the CheA Phosphotransferase Domain from Thermotoga maritima.
J.Mol.Biol., 341, 2004
6SG6
DownloadVisualize
BU of 6sg6 by Molmil
Human Carbonic Anhydrase II in complex with furan-containing benzenesulfonamide
分子名称: (4-CARBOXYPHENYL)(CHLORO)MERCURY, 4-(furan-2-ylmethylamino)-3-nitro-benzenesulfonamide, Carbonic anhydrase 2, ...
著者Gloeckner, S, Heine, A, Klebe, G.
登録日2019-08-02
公開日2020-08-26
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (0.98 Å)
主引用文献Human Carbonic Anhydrase II in complex with furan-containing benzenesulfonamide
To Be Published
2BZZ
DownloadVisualize
BU of 2bzz by Molmil
Crystal Structures of Eosinophil-derived Neurotoxin in Complex with the Inhibitors 5'-ATP, Ap3A, Ap4A and Ap5A
分子名称: ACETIC ACID, BIS(ADENOSINE)-5'-PENTAPHOSPHATE, NONSECRETORY RIBONUCLEASE
著者Baker, M.D, Holloway, D.E, Swaminathan, G.J, Acharya, K.R.
登録日2005-08-24
公開日2006-01-18
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (0.98 Å)
主引用文献Crystal Structures of Eosinophil-Derived Neurotoxin (Edn) in Complex with the Inhibitors 5'- ATP, Ap(3)A, Ap(4)A, and Ap(5)A.
Biochemistry, 45, 2006
3I5E
DownloadVisualize
BU of 3i5e by Molmil
Allosteric Modulation of DNA by Small Molecules
分子名称: 5'-D(*CP*CP*AP*GP*GP*CP*CP*TP*GP*G)-3', CALCIUM ION
著者Chenoweth, D.M, Dervan, P.B.
登録日2009-07-05
公開日2009-07-28
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (0.98 Å)
主引用文献Allosteric modulation of DNA by small molecules
Proc.Natl.Acad.Sci.USA, 106, 2009
4BCT
DownloadVisualize
BU of 4bct by Molmil
Crystal structure of kiwi-fruit allergen Act d 2
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, THAUMATIN-LIKE PROTEIN
著者Pavkov-Keller, T, Bublin, M, Jankovic, M, Breiteneder, H, Keller, W.
登録日2012-10-03
公開日2013-10-16
実験手法X-RAY DIFFRACTION (0.98 Å)
主引用文献Crystal Structure of Kiwi-Fruit Allergen Act D 2
To be Published
4QBX
DownloadVisualize
BU of 4qbx by Molmil
Human Aldose Reductase complexed with a ligand with an IDD structure ({5-fluoro-2-[(3-nitrobenzyl)carbamoyl]phenoxy}acetic acid) at 0.98 A
分子名称: Aldose reductase, CITRIC ACID, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
著者Rechlin, C, Heine, A, Klebe, G.
登録日2014-05-09
公開日2015-07-22
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (0.98 Å)
主引用文献Aldose Reductase: How expensive is the opening of the specificity pocket? IDD ligands under investigation
To be Published
5NFK
DownloadVisualize
BU of 5nfk by Molmil
Crystal structure of YrbA from Sinorhizobium meliloti in complex with nickel.
分子名称: LITHIUM ION, NICKEL (II) ION, YrbA
著者Roret, T, Didierjean, C.
登録日2017-03-14
公開日2018-10-10
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (0.98 Å)
主引用文献Sinorhizobium meliloti YrbA binds divalent metal cations using two conserved histidines.
Biosci.Rep., 40, 2020
3V1A
DownloadVisualize
BU of 3v1a by Molmil
Crystal structure of de novo designed MID1-apo1
分子名称: Computational design, MID1-apo1
著者Der, B.S, Machius, M, Miley, M.J, Kuhlman, B.
登録日2011-12-09
公開日2012-01-11
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (0.98 Å)
主引用文献Metal-mediated affinity and orientation specificity in a computationally designed protein homodimer.
J.Am.Chem.Soc., 134, 2012
5ZGI
DownloadVisualize
BU of 5zgi by Molmil
Crystal structure of NDM-1 at pH6.5 (Succinate) with 1 molecule per asymmetric unit
分子名称: 1,2-ETHANEDIOL, HYDROXIDE ION, Metallo-beta-lactamase type 2, ...
著者Zhang, H, Hao, Q.
登録日2018-03-09
公開日2018-08-22
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (0.98 Å)
主引用文献Active-Site Conformational Fluctuations Promote the Enzymatic Activity of NDM-1.
Antimicrob. Agents Chemother., 62, 2018
5RC3
DownloadVisualize
BU of 5rc3 by Molmil
PanDDA analysis group deposition -- Endothiapepsin changed state model for fragment F2X-Entry Library F03a
分子名称: ACETATE ION, DIMETHYL SULFOXIDE, Endothiapepsin, ...
著者Weiss, M.S, Wollenhaupt, J, Metz, A, Barthel, T, Lima, G.M.A, Heine, A, Mueller, U, Klebe, G.
登録日2020-03-24
公開日2020-06-03
最終更新日2020-06-17
実験手法X-RAY DIFFRACTION (0.98 Å)
主引用文献F2X-Universal and F2X-Entry: Structurally Diverse Compound Libraries for Crystallographic Fragment Screening.
Structure, 28, 2020
1K4I
DownloadVisualize
BU of 1k4i by Molmil
Crystal Structure of 3,4-dihydroxy-2-butanone 4-phosphate synthase in complex with two Magnesium ions
分子名称: 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase, MAGNESIUM ION, SULFATE ION
著者Liao, D.-I, Zheng, Y.-J, Viitanen, P.V, Jordan, D.B.
登録日2001-10-08
公開日2002-03-06
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (0.98 Å)
主引用文献Structural definition of the active site and catalytic mechanism of 3,4-dihydroxy-2-butanone-4-phosphate synthase.
Biochemistry, 41, 2002
1V0L
DownloadVisualize
BU of 1v0l by Molmil
Xylanase Xyn10A from Streptomyces lividans in complex with xylobio-isofagomine at pH 5.8
分子名称: ENDO-1,4-BETA-XYLANASE A, PIPERIDINE-3,4-DIOL, beta-D-xylopyranose
著者Gloster, T.M, Williams, S.J, Roberts, S, Tarling, C.A, Wicki, J, Withers, S.G, Davies, G.J.
登録日2004-03-31
公開日2004-08-16
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (0.98 Å)
主引用文献Atomic Resolution Analyses of the Binding of Xylobiose-Derived Deoxynojirimycin and Isofagomine to Xylanase Xyn10A
Chem.Commun.(Camb.), 16, 2004
5RDN
DownloadVisualize
BU of 5rdn by Molmil
PanDDA analysis group deposition -- Endothiapepsin ground state model 47
分子名称: ACETATE ION, DI(HYDROXYETHYL)ETHER, Endothiapepsin, ...
著者Weiss, M.S, Wollenhaupt, J, Metz, A, Barthel, T, Lima, G.M.A, Heine, A, Mueller, U, Klebe, G.
登録日2020-03-24
公開日2020-06-03
最終更新日2020-06-17
実験手法X-RAY DIFFRACTION (0.98 Å)
主引用文献F2X-Universal and F2X-Entry: Structurally Diverse Compound Libraries for Crystallographic Fragment Screening.
Structure, 28, 2020
5CE4
DownloadVisualize
BU of 5ce4 by Molmil
High Resolution X-Ray and Neutron diffraction structure of H-FABP
分子名称: Fatty acid-binding protein, heart, OLEIC ACID
著者Podjarny, A.D, Howard, E.I, Blakeley, M.P, Guillot, B.
登録日2015-07-06
公開日2016-03-09
最終更新日2024-05-08
実験手法NEUTRON DIFFRACTION (0.98 Å), X-RAY DIFFRACTION
主引用文献High-resolution neutron and X-ray diffraction room-temperature studies of an H-FABP-oleic acid complex: study of the internal water cluster and ligand binding by a transferred multipolar electron-density distribution.
Iucrj, 3, 2016
5RVH
DownloadVisualize
BU of 5rvh by Molmil
PanDDA analysis group deposition -- Crystal structure of SARS-CoV-2 NSP3 macrodomain in complex with ZINC000000265642
分子名称: Non-structural protein 3, quinoline-3-carboxylic acid
著者Correy, G.J, Young, I.D, Thompson, M.C, Fraser, J.S.
登録日2020-09-28
公開日2020-12-16
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (0.98 Å)
主引用文献Fragment binding to the Nsp3 macrodomain of SARS-CoV-2 identified through crystallographic screening and computational docking.
Sci Adv, 7, 2021
3D1P
DownloadVisualize
BU of 3d1p by Molmil
Atomic resolution structure of uncharacterized protein from Saccharomyces cerevisiae
分子名称: ACETATE ION, CHLORIDE ION, Putative thiosulfate sulfurtransferase YOR285W
著者Nocek, B, Evdokimova, E, Kudritska, M, Savchenko, A, Edwards, A.M, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
登録日2008-05-06
公開日2008-07-08
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (0.98 Å)
主引用文献Atomic resolution structure of uncharacterized protein from Saccharomyces cerevisiae.
To be Published
2NLS
DownloadVisualize
BU of 2nls by Molmil
Human beta-defensin-1 (Mutant Gln24Ala)
分子名称: Beta-defensin 1
著者Lubkowski, J, Pazgier, M.
登録日2006-10-20
公開日2006-10-31
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (0.98 Å)
主引用文献Studies of the Biological Properties of Human beta-Defensin 1.
J.Biol.Chem., 282, 2007

222926

件を2024-07-24に公開中

PDB statisticsPDBj update infoContact PDBjnumon