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4GMH
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BU of 4gmh by Molmil
Crystal structure of staphylococcus aureus 5'-methylthioadenosine/s-adenosylhomocysteine nucleosidase
分子名称: 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase, ACETATE ION
著者Brown, R.L, Anderson, B.F, Norris, G.E, Tyler, P.C, Evans, G.B, Sutherland-Smith, A.J.
登録日2012-08-15
公開日2012-11-28
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of staphylococcus aureus 5'-methylthioadenosine/s-adenosylhomocysteine nucleosidase
To be Published
4BR2
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BU of 4br2 by Molmil
rat NTPDase2 in complex with Ca UMPPNP
分子名称: 5'-O-[(R)-hydroxy{[(S)-hydroxy(phosphonoamino)phosphoryl]oxy}phosphoryl]uridine, CALCIUM ION, ECTONUCLEOSIDE TRIPHOSPHATE DIPHOSPHOHYDROLASE 2, ...
著者Zebisch, M, Schaefer, P, Lauble, P, Straeter, N.
登録日2013-06-03
公開日2013-07-17
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystallographic Snapshots Along the Reaction Pathway of Nucleoside Triphosphate Diphosphohydrolases
Structure, 21, 2013
4OGF
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BU of 4ogf by Molmil
Crystal Structure of Human DJ-1 with glyoxylate as substrate analog
分子名称: Protein DJ-1
著者Choi, D, Kim, J, Ryu, K.-S, Park, C.
登録日2014-01-16
公開日2014-10-15
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Stereospecific mechanism of DJ-1 glyoxalases inferred from their hemithioacetal-containing crystal structures.
Febs J., 281, 2014
7C0M
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BU of 7c0m by Molmil
Human cGAS-nucleosome complex
分子名称: Cyclic GMP-AMP synthase, DNA (145-MER), Histone H2A type 1-B/E, ...
著者Kujirai, T, Zierhut, C, Takizawa, Y, Kim, R, Negishi, L, Uruma, N, Hirai, S, Funabiki, H, Kurumizaka, H.
登録日2020-05-01
公開日2020-09-16
最終更新日2024-03-27
実験手法ELECTRON MICROSCOPY (3.9 Å)
主引用文献Structural basis for the inhibition of cGAS by nucleosomes.
Science, 370, 2020
8UA7
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BU of 8ua7 by Molmil
Medusavirus Nucleosome Core Particle
分子名称: Histone H2A, Histone H2B, Histone H3, ...
著者Toner, C.M, Hoitsma, N.M, Weerawarana, S, Luger, K.
登録日2023-09-20
公開日2024-10-30
最終更新日2025-06-04
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Characterization of Medusavirus encoded histones reveals nucleosome-like structures and a unique linker histone.
Nat Commun, 15, 2024
7VDT
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BU of 7vdt by Molmil
The motor-nucleosome module of human chromatin remodeling PBAF-nucleosome complex
分子名称: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, DNA (207-MER), ...
著者Chen, Z.C, Chen, K.J, Yuan, J.J.
登録日2021-09-07
公開日2022-05-18
実験手法ELECTRON MICROSCOPY (2.8 Å)
主引用文献Structure of human chromatin-remodelling PBAF complex bound to a nucleosome.
Nature, 605, 2022
6KVD
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BU of 6kvd by Molmil
Crystal structure of human nucleosome containing H2A.J
分子名称: CHLORIDE ION, DNA (146-MER), Histone H2A.J, ...
著者Tanaka, H, Koyama, M, Sato, S, Kujirai, T, Kurumizaka, H.
登録日2019-09-04
公開日2019-12-18
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.21 Å)
主引用文献Biochemical and structural analyses of the nucleosome containing human histone H2A.J.
J.Biochem., 167, 2020
7CRR
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BU of 7crr by Molmil
Native NSD3 bound to 187-bp nucleosome
分子名称: DNA (168-MER), DNA(168-MER), Histone H2A, ...
著者Li, W, Tian, W, Yuan, G, Deng, P, Gozani, O, Patel, D, Wang, Z.
登録日2020-08-14
公開日2020-10-21
最終更新日2025-07-02
実験手法ELECTRON MICROSCOPY (3.48 Å)
主引用文献Molecular basis of nucleosomal H3K36 methylation by NSD methyltransferases.
Nature, 590, 2021
7Y00
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BU of 7y00 by Molmil
Cryo-EM structure of the nucleosome containing 169 base-pair DNA with a p53 target sequence
分子名称: DNA (169-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ...
著者Nishimura, M, Nozawa, K, Takizawa, Y, Kurumizaka, H.
登録日2022-06-03
公開日2022-10-19
最終更新日2024-07-03
実験手法ELECTRON MICROSCOPY (3.96 Å)
主引用文献Structural basis for p53 binding to its nucleosomal target DNA sequence.
Pnas Nexus, 1, 2022
7XZY
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BU of 7xzy by Molmil
Cryo-EM structure of the nucleosome containing 193 base-pair DNA with a p53 target sequence
分子名称: DNA (193-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ...
著者Nishimura, M, Nozawa, K, Takizawa, Y, Kurumizaka, H.
登録日2022-06-03
公開日2022-10-19
最終更新日2024-07-03
実験手法ELECTRON MICROSCOPY (3.97 Å)
主引用文献Structural basis for p53 binding to its nucleosomal target DNA sequence.
Pnas Nexus, 1, 2022
7XZZ
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BU of 7xzz by Molmil
Cryo-EM structure of the nucleosome in complex with p53
分子名称: Cellular tumor antigen p53, DNA (169-MER), Histone H2A type 1-B/E, ...
著者Nishimura, M, Nozawa, K, Takizawa, Y, Kurumizaka, H.
登録日2022-06-03
公開日2022-10-12
最終更新日2024-07-03
実験手法ELECTRON MICROSCOPY (4.07 Å)
主引用文献Structural basis for p53 binding to its nucleosomal target DNA sequence.
Pnas Nexus, 1, 2022
7UNC
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BU of 7unc by Molmil
Pol II-DSIF-SPT6-PAF1c-TFIIS complex with rewrapped nucleosome
分子名称: DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit RPB3, DNA-directed RNA polymerase II subunit RPB7, ...
著者Filipovski, M, Vos, S.M, Farnung, L.
登録日2022-04-10
公開日2022-10-19
最終更新日2024-10-23
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献Structural basis of nucleosome retention during transcription elongation.
Science, 376, 2022
6NQB
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BU of 6nqb by Molmil
Role of Era in Assembly and Homeostasis of the Ribosomal Small Subunit
分子名称: 16S RIBOSOMAL RNA, 30S RIBOSOMAL PROTEIN bS16, 30S ribosomal protein S10, ...
著者Ortega, J.
登録日2019-01-20
公開日2019-06-26
最終更新日2025-05-21
実験手法ELECTRON MICROSCOPY (3.8 Å)
主引用文献Role of Era in assembly and homeostasis of the ribosomal small subunit.
Nucleic Acids Res., 47, 2019
7XZX
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BU of 7xzx by Molmil
Cryo-EM structure of the nucleosome in complex with p53 DNA-binding domain
分子名称: Cellular tumor antigen p53, DNA (193-MER), Histone H2A type 1-B/E, ...
著者Nishimura, M, Nozawa, K, Takizawa, Y, Kurumizaka, H.
登録日2022-06-03
公開日2022-10-12
最終更新日2024-07-03
実験手法ELECTRON MICROSCOPY (4.53 Å)
主引用文献Structural basis for p53 binding to its nucleosomal target DNA sequence.
Pnas Nexus, 1, 2022
8XBY
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BU of 8xby by Molmil
The cryo-EM structure of the RAD51 L1 and L2 loops bound to the linker DNA with the blunt end of the nucleosome
分子名称: DNA (5'-D(P*AP*AP*CP*GP*AP*AP*AP*AP*CP*GP*GP*CP*CP*AP*CP*CP*AP*CP*G)-3'), DNA (5'-D(P*CP*GP*TP*GP*GP*TP*GP*GP*CP*CP*GP*TP*TP*TP*TP*CP*GP*TP*T)-3'), DNA repair protein RAD51 homolog 1
著者Shioi, T, Hatazawa, S, Ogasawara, M, Takizawa, Y, Kurumizaka, H.
登録日2023-12-07
公開日2024-03-27
最終更新日2024-05-08
実験手法ELECTRON MICROSCOPY (7.8 Å)
主引用文献Cryo-EM structures of RAD51 assembled on nucleosomes containing a DSB site.
Nature, 628, 2024
8XBX
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BU of 8xbx by Molmil
The cryo-EM structure of the RAD51 L2 loop bound to the linker DNA with the blunt end of the nucleosome
分子名称: DNA (5'-D(P*AP*AP*CP*GP*AP*AP*AP*AP*CP*GP*GP*CP*CP*AP*CP*CP*AP*CP*G)-3'), DNA (5'-D(P*CP*GP*TP*GP*GP*TP*GP*GP*CP*CP*GP*TP*TP*TP*TP*CP*GP*TP*T)-3'), DNA repair protein RAD51 homolog 1
著者Shioi, T, Hatazawa, S, Ogasawara, M, Takizawa, Y, Kurumizaka, H.
登録日2023-12-07
公開日2024-03-27
最終更新日2024-04-17
実験手法ELECTRON MICROSCOPY (4.36 Å)
主引用文献Cryo-EM structures of RAD51 assembled on nucleosomes containing a DSB site.
Nature, 628, 2024
8XBV
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BU of 8xbv by Molmil
The cryo-EM structure of the RAD51 L1 and L2 loops bound to the linker DNA with the sticky end of the nucleosome
分子名称: DNA (5'-D(P*CP*GP*AP*AP*AP*AP*CP*GP*GP*CP*CP*AP*CP*CP*A)-3'), DNA (5'-D(P*TP*GP*GP*CP*CP*GP*TP*TP*TP*TP*CP*G)-3'), DNA repair protein RAD51 homolog 1
著者Shioi, T, Hatazawa, S, Ogasawara, M, Takizawa, Y, Kurumizaka, H.
登録日2023-12-07
公開日2024-03-27
最終更新日2024-05-08
実験手法ELECTRON MICROSCOPY (7.61 Å)
主引用文献Cryo-EM structures of RAD51 assembled on nucleosomes containing a DSB site.
Nature, 628, 2024
3AN2
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BU of 3an2 by Molmil
The structure of the centromeric nucleosome containing CENP-A
分子名称: 147 mer DNA, Histone H2A type 1-B/E, Histone H2B type 1-J, ...
著者Tachiwana, H, Kagawa, W, Shiga, T, Saito, K, Osakabe, A, Hayashi-Takanaka, Y, Park, S.-Y, Kimura, H, Kurumizaka, H.
登録日2010-08-27
公開日2011-07-20
最終更新日2024-11-13
実験手法X-RAY DIFFRACTION (3.6 Å)
主引用文献Crystal structure of the human centromeric nucleosome containing CENP-A
Nature, 476, 2011
4QEZ
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BU of 4qez by Molmil
Crystal structure of 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase from Bacillus anthracis
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase, ADENINE
著者Tarique, K.F, Devi, S, Abdul Rehman, S.A, Gourinath, S.
登録日2014-05-19
公開日2014-06-18
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Crystal structure of 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase from Bacillus anthracis
To be Published
9MGX
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BU of 9mgx by Molmil
Crystal structure of Purine nucleoside phosphorylase from Trichomonas vaginalis (phosphate/adenine bound)
分子名称: ADENINE, CHLORIDE ION, PHOSPHATE ION, ...
著者Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
登録日2024-12-11
公開日2024-12-18
実験手法X-RAY DIFFRACTION (1.25 Å)
主引用文献Crystal structure of Purine nucleoside phosphorylase from Trichomonas vaginalis (phosphate/adenine bound)
To be published
9MGO
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BU of 9mgo by Molmil
Crystal structure of Purine nucleoside phosphorylase from Trichomonas vaginalis (citrate bound)
分子名称: CITRIC ACID, Purine nucleoside phosphorylase, putative
著者Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
登録日2024-12-11
公開日2024-12-18
実験手法X-RAY DIFFRACTION (1.89 Å)
主引用文献Crystal structure of Purine nucleoside phosphorylase from Trichomonas vaginalis (citrate bound)
To be published
9MH2
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BU of 9mh2 by Molmil
Crystal structure of Purine nucleoside phosphorylase from Trichomonas vaginalis (Adenosine and glycine complex)
分子名称: ADENOSINE, CHLORIDE ION, GLYCINE, ...
著者Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
登録日2024-12-11
公開日2024-12-18
実験手法X-RAY DIFFRACTION (1.35 Å)
主引用文献Crystal structure of Purine nucleoside phosphorylase from Trichomonas vaginalis (Adenosine and glycine complex)
To be published
9MFC
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BU of 9mfc by Molmil
Crystal structure of Purine nucleoside phosphorylase from Trichomonas vaginalis (adenosine and phosphate bound)
分子名称: ADENOSINE, CHLORIDE ION, PHOSPHATE ION, ...
著者Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
登録日2024-12-09
公開日2024-12-18
実験手法X-RAY DIFFRACTION (1.24 Å)
主引用文献Crystal structure of Purine nucleoside phosphorylase from Trichomonas vaginalis (adenosine and phosphate bound)
To be published
9MGJ
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BU of 9mgj by Molmil
Crystal structure of Purine nucleoside phosphorylase from Trichomonas vaginalis (mannose bound)
分子名称: GLYCEROL, Purine nucleoside phosphorylase, putative, ...
著者Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
登録日2024-12-11
公開日2024-12-18
実験手法X-RAY DIFFRACTION (1.18 Å)
主引用文献Crystal structure of Purine nucleoside phosphorylase from Trichomonas vaginalis (mannose bound)
To be published
9MG7
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BU of 9mg7 by Molmil
Crystal structure of Purine nucleoside phosphorylase from Trichomonas vaginalis (phosphate bound)
分子名称: GLYCEROL, PHOSPHATE ION, Purine nucleoside phosphorylase, ...
著者Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
登録日2024-12-10
公開日2024-12-18
実験手法X-RAY DIFFRACTION (1.27 Å)
主引用文献Crystal structure of Purine nucleoside phosphorylase from Trichomonas vaginalis (phosphate bound)
To be published

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件を2025-07-09に公開中

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