PDB: 45953 件ウェブページステータス検索Chemie searchBIRD

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1EEG	A(GGGG)A HEXAD PAIRING ALIGMENT FOR THE D(G-G-A-G-G-A-G) SEQUENCE 分子名称: DNA (5'-D(*GP*GP*AP*GP*GP*A)-3') 著者 Kettani, A, Gorin, A, Majumdar, A, Hermann, T, Skripkin, E, Zhao, H, Jones, R, Patel, D.J. 登録日 2000-01-31 公開日 2000-04-02 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 A dimeric DNA interface stabilized by stacked A.(G.G.G.G).A hexads and coordinated monovalent cations. J.Mol.Biol., 297, 2000
4HK7	Crystal structure of Cordyceps militaris IDCase in complex with uracil 分子名称: URACIL, Uracil-5-carboxylate decarboxylase, ZINC ION 著者 Xu, S, Zhu, J, Ding, J. 登録日 2012-10-15 公開日 2013-09-11 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.189 Å) 主引用文献 Crystal structures of isoorotate decarboxylases reveal a novel catalytic mechanism of 5-carboxyl-uracil decarboxylation and shed light on the search for DNA decarboxylase. Cell Res., 23, 2013
4HK5	Crystal structure of Cordyceps militaris IDCase in apo form 分子名称: Uracil-5-carboxylate decarboxylase, ZINC ION 著者 Xu, S, Zhu, J, Ding, J. 登録日 2012-10-15 公開日 2013-09-11 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Crystal structures of isoorotate decarboxylases reveal a novel catalytic mechanism of 5-carboxyl-uracil decarboxylation and shed light on the search for DNA decarboxylase. Cell Res., 23, 2013
4HJW	Crystal structure of Metarhizium anisopliae IDCase in apo form 分子名称: Uracil-5-carboxylate decarboxylase, ZINC ION 著者 Xu, S, Zhu, J, Ding, J. 登録日 2012-10-14 公開日 2013-09-11 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Crystal structures of isoorotate decarboxylases reveal a novel catalytic mechanism of 5-carboxyl-uracil decarboxylation and shed light on the search for DNA decarboxylase. Cell Res., 23, 2013
4IUP	crystal structure of Se-substituted arabidopsis thaliana SHH1 SAWADEE domain L200M/L218M mutant 分子名称: BETA-MERCAPTOETHANOL, CYMAL-4, SAWADEE HOMEODOMAIN HOMOLOG 1, ... 著者 Du, J, Patel, D.J. 登録日 2013-01-21 公開日 2013-05-01 最終更新日 2013-07-10 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Polymerase IV occupancy at RNA-directed DNA methylation sites requires SHH1. Nature, 498, 2013
4HK6	Crystal structure of Cordyceps militaris IDCase in complex with 5-nitro-uracil 分子名称: 5-nitrouracil, Uracil-5-carboxylate decarboxylase, ZINC ION 著者 Xu, S, Zhu, J, Ding, J. 登録日 2012-10-15 公開日 2013-09-11 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Crystal structures of isoorotate decarboxylases reveal a novel catalytic mechanism of 5-carboxyl-uracil decarboxylation and shed light on the search for DNA decarboxylase. Cell Res., 23, 2013
4IUU	Crystal structure of SHH1 SAWADEE domain in complex with H3K9me1 peptide 分子名称: CYMAL-4, Histone H3.2, H3(1-15)K9me3, ... 著者 Du, J, Patel, D.J. 登録日 2013-01-21 公開日 2013-05-01 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Polymerase IV occupancy at RNA-directed DNA methylation sites requires SHH1. Nature, 498, 2013
4IUR	crystal structure of SHH1 SAWADEE domain in complex with H3K9me3 peptide 分子名称: CYMAL-4, Histone H3.2, H3(1-15)K9me3, ... 著者 Patel, D.J, Du, J. 登録日 2013-01-21 公開日 2013-05-01 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.501 Å) 主引用文献 Polymerase IV occupancy at RNA-directed DNA methylation sites requires SHH1. Nature, 498, 2013
4IUV	crystal structure of SHH1 SAWADEE domain in complex with H3K4me1K9me1 peptide 分子名称: CYMAL-4, Histone H3.2, H3(1-15)K9me3, ... 著者 Du, J, Patel, D.J. 登録日 2013-01-21 公開日 2013-05-01 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Polymerase IV occupancy at RNA-directed DNA methylation sites requires SHH1. Nature, 498, 2013
4IUT	crystal structure of SHH1 SAWADEE domain in complex with H3K9me2 peptide 分子名称: CYMAL-4, Histone H3.2, H3(1-15)K9me3, ... 著者 Du, J, Patel, D.J. 登録日 2013-01-21 公開日 2013-05-01 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Polymerase IV occupancy at RNA-directed DNA methylation sites requires SHH1. Nature, 498, 2013
4IUQ	crystal structure of SHH1 SAWADEE domain 分子名称: CYMAL-4, SAWADEE HOMEODOMAIN HOMOLOG 1, ZINC ION 著者 Du, J, Patel, D.J. 登録日 2013-01-21 公開日 2013-05-01 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.809 Å) 主引用文献 Polymerase IV occupancy at RNA-directed DNA methylation sites requires SHH1. Nature, 498, 2013
7ES4	the crystral structure of DndH-C-domain 分子名称: DNA phosphorothioation-dependent restriction protein DptH 著者 Wu, D. 登録日 2021-05-08 公開日 2022-05-11 最終更新日 2022-12-21 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 The functional coupling between restriction and DNA phosphorothioate modification systems underlying the DndFGH restriction complex Nat Catal, 2022
2HY9	Human telomere DNA quadruplex structure in K+ solution hybrid-1 form 分子名称: DNA (26-MER) 著者 Dai, J, Punchihewa, C, Jones, R.A, Hurley, L, Yang, D. 登録日 2006-08-04 公開日 2007-04-10 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Structure of the intramolecular human telomeric G-quadruplex in potassium solution: a novel adenine triple formation. Nucleic Acids Res., 35, 2007
6GRC	eukaryotic junction-resolving enzyme GEN-1 binding with Sodium 分子名称: DNA (5'-D(*TP*AP*CP*CP*CP*AP*CP*CP*AP*CP*CP*GP*CP*TP*CP*A)-3'), DNA (5'-D(*TP*GP*AP*GP*CP*GP*GP*TP*GP*GP*TP*TP*GP*GP*T)-3'), MAGNESIUM ION, ... 著者 Lilley, D.M.J, Liu, Y, Freeman, D.J. 登録日 2018-06-11 公開日 2018-09-26 最終更新日 2019-02-13 実験手法 X-RAY DIFFRACTION (2.452 Å) 主引用文献 A monovalent ion in the DNA binding interface of the eukaryotic junction-resolving enzyme GEN1. Nucleic Acids Res., 46, 2018
6GRB	eukaryotic junction-resolving enzyme GEN-1 binding with Potassium 分子名称: DNA (5'-D(*TP*AP*CP*CP*CP*AP*CP*CP*AP*CP*CP*GP*CP*TP*CP*A)-3'), DNA (5'-D(*TP*GP*AP*GP*CP*GP*GP*TP*GP*GP*TP*TP*GP*GP*T)-3'), MAGNESIUM ION, ... 著者 Lilley, D.M.J, Liu, Y, Freeman, D.J. 登録日 2018-06-11 公開日 2018-09-26 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 A monovalent ion in the DNA binding interface of the eukaryotic junction-resolving enzyme GEN1. Nucleic Acids Res., 46, 2018
7Z8Z	Crystal structure of the MEILB2-BRME1 2:2 core complex 分子名称: Break repair meiotic recombinase recruitment factor 1, Heat shock factor 2-binding protein 著者 Gurusaran, M, Davies, O.R. 登録日 2022-03-19 公開日 2023-09-20 最終更新日 2024-08-14 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 MEILB2-BRME1 forms a V-shaped DNA clamp upon BRCA2-binding in meiotic recombination. Nat Commun, 15, 2024
1EJZ	SOLUTION STRUCTURE OF A HNA-RNA HYBRID 分子名称: DNA (5'-H(*(6HG)P*(6HC)P*(6HG)P*(6HT)P*(6HA)P*(6HG)P*(6HC)P*(6HG))-3'), PHOSPHORIC ACID MONO-(3-HYDROXY-PROPYL) ESTER, RNA (5'-R(*CP*GP*CP*UP*AP*CP*GP*C)-3') 著者 Lescrnier, E, Esnouf, R, Heus, H.A, Hilbers, C.W, Herdewijn, P. 登録日 2000-03-06 公開日 2000-10-23 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Solution structure of a HNA-RNA hybrid. Chem.Biol., 7, 2000
7YT9	crystal structure of AGD1-4 of Arabidopsis AGDP3 分子名称: AGD1-4 of Arabidopsis AGDP3 著者 Zhou, X, Du, J. 登録日 2022-08-13 公開日 2022-10-12 最終更新日 2024-05-29 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 The H3K9me2-binding protein AGDP3 limits DNA methylation and transcriptional gene silencing in Arabidopsis. J Integr Plant Biol, 64, 2022
7YTA	crystal structure of NtAGDP3 AGD1-2 in complex with an H3K9me2 peptide 分子名称: AGDP3 AGD1-2, H3(1-15)K9me2 peptide 著者 Zhou, X, Du, J. 登録日 2022-08-13 公開日 2022-10-12 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.31 Å) 主引用文献 The H3K9me2-binding protein AGDP3 limits DNA methylation and transcriptional gene silencing in Arabidopsis. J Integr Plant Biol, 64, 2022
8C7B	Slow cation movements within tetramolecular G-quadruplex: vacant cation binding sites in addition to all syn G-quartet 分子名称: DNA (5'-D(*GP*GP*GP*GP*CP*C)-3') 著者 Wang, B, Zalar, M, Plavec, J, Sket, P. 登録日 2023-01-14 公開日 2023-11-22 実験手法 SOLUTION NMR 主引用文献 Insight into Tetramolecular DNA G-Quadruplexes Associated with ALS and FTLD: Cation Interactions and Formation of Higher-Ordered Structure. Int J Mol Sci, 24, 2023
8AMT	OBD-RepB pMV158 domain 分子名称: CHLORIDE ION, GLYCEROL, MANGANESE (II) ION, ... 著者 Machon, C, Amodio, J, Boer, R.D, Ruiz-Maso, J.A, del Solar, G, Coll, M. 登録日 2022-08-04 公開日 2023-02-08 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Structures of pMV158 replication initiator RepB with and without DNA reveal a flexible dual-function protein. Nucleic Acids Res., 51, 2023
8AMV	RepB pMV158 hexamer 分子名称: PHOSPHATE ION, Replication protein RepB, SODIUM ION 著者 Machon, C, Amodio, J, Boer, R.D, Ruiz-Maso, J.A, del Solar, G, Coll, M. 登録日 2022-08-04 公開日 2023-02-08 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.77 Å) 主引用文献 Structures of pMV158 replication initiator RepB with and without DNA reveal a flexible dual-function protein. Nucleic Acids Res., 51, 2023
7W0X	Tetrameric antiparallel G-quadruplex formed by natural human telomeric sequence 分子名称: DNA (5'-D(*GP*GP*GP*TP*TP*A)-3') 著者 Jing, H.T, Fu, W.Q. 登録日 2021-11-18 公開日 2022-01-19 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 NMR structure of an alternating antiparallel tetrameric G-quadruplex assembled by the single-repeat of human telomeric DNA d(GGGTTA) To Be Published
8C7A	Slow cation movements within tetramolecular G-quadruplex: vacant cation binding sites in addition to all syn G-quartet 分子名称: DNA (5'-D(*GP*GP*GP*GP*CP*C)-3') 著者 Wang, B, Zalar, M, Plavec, J, Sket, P. 登録日 2023-01-14 公開日 2023-11-22 実験手法 SOLUTION NMR 主引用文献 Insight into Tetramolecular DNA G-Quadruplexes Associated with ALS and FTLD: Cation Interactions and Formation of Higher-Ordered Structure. Int J Mol Sci, 24, 2023
7YF7	NMR solution structures of the DNA minidumbbell formed by two ATTTT repeats 分子名称: DNA (5'-D(*AP*TP*TP*TP*TP*AP*TP*TP*TP*T)-3'), SODIUM ION 著者 Wan, L, Li, J, Guo, P. 登録日 2022-07-07 公開日 2023-01-11 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Solution Nuclear Magnetic Resonance Structures of ATTTT and ATTTC Pentanucleotide Repeats Associated with SCA37 and FAMEs. Acs Chem Neurosci, 14, 2023

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