PDB: 12060 件ウェブページステータス検索Chemie searchBIRD

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6WSA	Crystal structure of a betaine aldehyde dehydrogenase from Burkholderia pseudomallei without cofactor 分子名称: 1,2-ETHANEDIOL, NAD/NADP-dependent betaine aldehyde dehydrogenase, SODIUM ION, ... 著者 Seattle Structural Genomics Center for Infectious Disease (SSGCID) 登録日 2020-04-30 公開日 2020-05-20 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.05 Å) 主引用文献 Crystal structure of betaine aldehyde dehydrogenase from Burkholderia pseudomallei. Acta Crystallogr.,Sect.F, 78, 2022
6WSB	Crystal structure of a betaine aldehyde dehydrogenase from Burkholderia pseudomallei bound to cofactor NAD 分子名称: GLYCEROL, NAD/NADP-dependent betaine aldehyde dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE 著者 Seattle Structural Genomics Center for Infectious Disease (SSGCID) 登録日 2020-04-30 公開日 2020-05-20 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (1.55 Å) 主引用文献 Crystal structure of betaine aldehyde dehydrogenase from Burkholderia pseudomallei. Acta Crystallogr.,Sect.F, 78, 2022
4N4N	Nitrosomonas europea HAO 分子名称: HEME C, Hydroxylamine oxidoreductase, PHOSPHATE ION, ... 著者 Maalcke, W.J, Dietl, A, Marritt, S.J, Butt, J.N, Jetten, M.S.M, Keltjens, J.T, Barends, T.R.M.B, Kartal, B. 登録日 2013-10-08 公開日 2013-12-11 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Structural Basis of Biological NO Generation by Octaheme Oxidoreductases. J.Biol.Chem., 289, 2014
6WZQ	Structure of SARS-CoV-2 Nucleocapsid dimerization domain, P21 form 分子名称: Nucleoprotein, SULFATE ION 著者 Ye, Q, Corbett, K.D. 登録日 2020-05-14 公開日 2020-05-27 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (1.45 Å) 主引用文献 Architecture and self-assembly of the SARS-CoV-2 nucleocapsid protein. Protein Sci., 29, 2020
4MVK	Crystal structure of an engineered lipocalin (Anticalin US7) in complex with the Alzheimer amyloid peptide fragment VFFAED 分子名称: Amyloid peptide fragment VFFAED, Neutrophil gelatinase-associated lipocalin 著者 Eichinger, A, Skerra, A. 登録日 2013-09-24 公開日 2015-08-12 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 High-affinity Anticalins with aggregation-blocking activity directed against the Alzheimer beta-amyloid peptide. Biochem.J., 473, 2016
5XM9	Crystal structure of AsfvPolX in complex with DNA enzyme. 分子名称: DNA (23-mer), DNA (36-MER), Repair DNA polymerase X 著者 Liu, H.H, Gan, J.H. 登録日 2017-05-13 公開日 2018-01-24 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (3.053 Å) 主引用文献 Crystal structure of an RNA-cleaving DNAzyme. Nat Commun, 8, 2017
4N4M	Kuenenia stuttgartiensis hydroxylamine oxidoreductase soaked in phenyl hydrazine 分子名称: 1,2-ETHANEDIOL, 1-PHENYLHYDRAZINE, HEME C, ... 著者 Maalcke, W.J, Dietl, A, Marritt, S.J, Butt, J.N, Jetten, M.S.M, Keltjens, J.T, Barends, T.R.M.B, Kartal, B. 登録日 2013-10-08 公開日 2013-12-11 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Structural Basis of Biological NO Generation by Octaheme Oxidoreductases. J.Biol.Chem., 289, 2014
6X1Z	Mre11 dimer in complex with small molecule modulator PFMJ 分子名称: (5Z)-5-[(3,4-dimethoxyphenyl)methylidene]-2-sulfanylidene-1,3-thiazolidin-4-one, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, MAGNESIUM ION, ... 著者 Arvai, A.S, Moiani, D, Tainer, J.A. 登録日 2020-05-19 公開日 2020-06-10 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Fragment- and structure-based drug discovery for developing therapeutic agents targeting the DNA Damage Response. Prog.Biophys.Mol.Biol., 163, 2021
6BK6	Crystal structure of Hendra virus matrix protein 分子名称: ACETATE ION, Hendra virus matrix protein 著者 Liu, Y.C. 登録日 2017-11-07 公開日 2018-04-25 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Electrostatic Interactions between Hendra Virus Matrix Proteins Are Required for Efficient Virus-Like-Particle Assembly. J. Virol., 92, 2018
4N4J	Kuenenia stuttgartiensis hydroxylamine oxidoreductase 分子名称: 1-[(4-cyclohexylbutanoyl)(2-hydroxyethyl)amino]-1-deoxy-D-glucitol, HEME C, PHOSPHATE ION, ... 著者 Maalcke, W.J, Dietl, A, Marritt, S.J, Butt, J.N, Jetten, M.S.M, Keltjens, J.T, Barends, T.R.M.B, Kartal, B. 登録日 2013-10-08 公開日 2013-12-11 最終更新日 2020-03-18 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Structural Basis of Biological NO Generation by Octaheme Oxidoreductases. J.Biol.Chem., 289, 2014
7B1W	Crystal structure of plastidial ribulose epimerase RPE1 from the model alga Chlamydomonas reinhardtii 分子名称: Ribulose-phosphate 3-epimerase, ZINC ION 著者 Henri, J, Zaffagnini, M, Tedesco, D, Crozet, P, Lemaire, S.D. 登録日 2020-11-25 公開日 2021-12-08 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (1.935 Å) 主引用文献 Characterization of chloroplast ribulose-5-phosphate-3-epimerase from the microalga Chlamydomonas reinhardtii. Plant Physiol., 2023
5ZNC	Plasmodium falciparum purine nucleoside phosphorylase in complex with quinine 分子名称: PHOSPHATE ION, Purine nucleoside phosphorylase, Quinine 著者 Chen, D, Nordlund, P. 登録日 2018-04-08 公開日 2019-01-16 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (1.66 Å) 主引用文献 Identifying purine nucleoside phosphorylase as the target of quinine using cellular thermal shift assay. Sci Transl Med, 11, 2019
4N4O	Nitrosomonas europea HAO soaked in NH2OH 分子名称: DODECAETHYLENE GLYCOL, HEME C, HYDROXYAMINE, ... 著者 Maalcke, W.J, Dietl, A, Marritt, S.J, Butt, J.N, Jetten, M.S.M, Keltjens, J.T, Barends, T.R.M.B, Kartal, B. 登録日 2013-10-08 公開日 2013-12-11 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.472 Å) 主引用文献 Structural Basis of Biological NO Generation by Octaheme Oxidoreductases. J.Biol.Chem., 289, 2014
5ZO0	Neutron structure of xylanase at pD5.4 分子名称: Endo-1,4-beta-xylanase 2 著者 Wan, Q, Li, Z.H. 登録日 2018-04-12 公開日 2019-05-15 最終更新日 2023-11-22 実験手法 NEUTRON DIFFRACTION (1.648 Å) 主引用文献 Neutron structure of xylanase at pD5.4 To be published
6X4M	Human cyclophilin A bound to a series of acylcic and macrocyclic inhibitors: tert-butyl [(2S)-1-{[(3S,17S)-2,16-dioxo-10,15-dioxa-1,21-diazatricyclo[15.3.1.1~5,9~]docosa-5(22),6,8-trien-3-yl]amino}-3-methyl-1-oxobutan-2-yl]carbamate (compound 3) 分子名称: Peptidyl-prolyl cis-trans isomerase A, tert-butyl [(2S)-1-{[(3S,17S)-2,16-dioxo-10,15-dioxa-1,21-diazatricyclo[15.3.1.1~5,9~]docosa-5(22),6,8-trien-3-yl]amino}-3-methyl-1-oxobutan-2-yl]carbamate 著者 Appleby, T.C, Paulsen, J.L, Schmitz, U, Shivakumar, D. 登録日 2020-05-22 公開日 2020-06-24 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Evaluation of Free Energy Calculations for the Prioritization of Macrocycle Synthesis. J.Chem.Inf.Model., 60, 2020
7VHV	Crystal structure of S. aureus D-alanine alanyl carrier protein ligase 分子名称: ADENOSINE-5'-TRIPHOSPHATE, D-alanine--D-alanyl carrier protein ligase, MAGNESIUM ION 著者 Lee, B.J, Lee, I.-G, Im, H.G, Yoon, H.J. 登録日 2021-09-23 公開日 2022-04-13 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.55 Å) 主引用文献 Structural and functional analysis of the D-alanyl carrier protein ligase DltA from Staphylococcus aureus Mu50. Acta Crystallogr D Struct Biol, 78, 2022
6X4Q	Human cyclophilin A bound to a series of acylcic and macrocyclic inhibitors: (2R,5S,11S,14S,18E)-14-cyclobutyl-2,11,17,17-tetramethyl-15-oxa-3,9,12,26,29-pentaazatetracyclo[18.5.3.1~5,9~.0~23,27~]nonacosa-1(25),18,20(28),21,23,26-hexaene-4,10,13,16-tetrone (compound 33) 分子名称: (2R,5S,11S,14S,18E)-14-cyclobutyl-2,11,17,17-tetramethyl-15-oxa-3,9,12,26,29-pentaazatetracyclo[18.5.3.1~5,9~.0~23,27~]nonacosa-1(25),18,20(28),21,23,26-hexaene-4,10,13,16-tetrone, Peptidyl-prolyl cis-trans isomerase A 著者 Appleby, T.C, Paulsen, J.L, Schmitz, U, Shivakumar, D. 登録日 2020-05-22 公開日 2020-06-24 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Evaluation of Free Energy Calculations for the Prioritization of Macrocycle Synthesis. J.Chem.Inf.Model., 60, 2020
4MP2	Crystal structure of pyruvate dehydrogenase kinase isoform 2 in complex with inhibitor PA1 分子名称: (5-bromo-2,4-dihydroxyphenyl)(1,3-dihydro-2H-isoindol-2-yl)methanone, L(+)-TARTARIC ACID, [Pyruvate dehydrogenase [lipoamide]] kinase isozyme 2, ... 著者 Gui, W.J, Tso, S.C, Chuang, J.L, Wu, C.Y, Qi, X, Tambar, U.K, Wynn, R.M, Chuang, D.T. 登録日 2013-09-12 公開日 2014-01-01 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.751 Å) 主引用文献 Structure-guided Development of Specific Pyruvate Dehydrogenase Kinase Inhibitors Targeting the ATP-binding Pocket. J.Biol.Chem., 289, 2014
6X1Y	Mre11 dimer in complex with small molecule modulator PFMI 分子名称: (5Z)-5-[(3-methoxyphenyl)methylidene]-2-sulfanylidene-1,3-thiazolidin-4-one, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Nuclease SbcCD subunit D 著者 Arvai, A.S, Moiani, D, Tainer, J.A. 登録日 2020-05-19 公開日 2020-06-10 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.35 Å) 主引用文献 Fragment- and structure-based drug discovery for developing therapeutic agents targeting the DNA Damage Response. Prog.Biophys.Mol.Biol., 163, 2021
7WJP	Structure of PadR-like protein from Listeria monocytogenes 分子名称: PadR family transcriptional regulator 著者 Hong, M, Kim, J. 登録日 2022-01-07 公開日 2022-04-20 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.25 Å) 主引用文献 Structure-based molecular characterization of the LltR transcription factor from Listeria monocytogenes. Biochem.Biophys.Res.Commun., 600, 2022
7WLC	SARS-CoV-2 Omicron variant spike RBD in complex with Fab XGv282 分子名称: Heavy chain of XGv282, Light chain of XGv282, Spike protein S1 著者 Wang, X, Wang, L. 登録日 2022-01-13 公開日 2022-04-13 最終更新日 2022-05-04 実験手法 ELECTRON MICROSCOPY (4 Å) 主引用文献 Memory B cell repertoire from triple vaccinees against diverse SARS-CoV-2 variants. Nature, 603, 2022
5XEC	Heterodimer constructed from PA cyt c551-HT cyt c552 and HT cyt c552-PA cyt c551 chimeric proteins 分子名称: Cytochrome c-551,Cytochrome c-552, Cytochrome c-552,Cytochrome c-551, HEME C 著者 Zhang, M, Nakanishi, T, Yamanaka, M, Nagao, S, Yanagisawa, S, Shomura, Y, Shibata, N, Ogura, T, Higuchi, Y, Hirota, S. 登録日 2017-04-04 公開日 2017-08-09 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (1.1 Å) 主引用文献 Rational Design of Domain-Swapping-Based c-Type Cytochrome Heterodimers by Using Chimeric Proteins. Chembiochem, 18, 2017
7WED	SARS-CoV-2 Omicron variant spike RBD in complex with Fab XGv347 分子名称: Spike protein S1, The heavy chain of Fab XGv347, The light chain of Fab XGv347 著者 Wang, X, Wang, L. 登録日 2021-12-23 公開日 2022-04-13 実験手法 ELECTRON MICROSCOPY (3.5 Å) 主引用文献 Memory B cell repertoire from triple vaccinees against diverse SARS-CoV-2 variants. Nature, 603, 2022
5XMA	Crystal structure of AsfvPolX in complex with DNA enzyme at P43212 space group 分子名称: DNA (36-MER), DNA/RNA (5'-D(*AP*CP*GP*AP*GP*AP*GP*AP*GP*AP*T)-R(P*G)-D(P*GP*GP*TP*GP*CP*GP*TP*TP*AP*CP*A)-3'), Repair DNA polymerase X 著者 Liu, H.H, Gan, J.H. 登録日 2017-05-13 公開日 2018-01-24 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (3.8 Å) 主引用文献 Crystal structure of an RNA-cleaving DNAzyme. Nat Commun, 8, 2017
5XKX	Crystal structure of WT DddY 分子名称: ACETATE ION, Uncharacterized protein, ZINC ION 著者 Li, C.Y, Zhang, Y.Z. 登録日 2017-05-10 公開日 2017-11-01 最終更新日 2018-01-24 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Mechanistic Insights into Dimethylsulfoniopropionate Lyase DddY, a New Member of the Cupin Superfamily. J. Mol. Biol., 429, 2017

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