PDB: 7404 件ウェブページステータス検索Chemie searchBIRD

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8RD8	Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1). 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S30, ... 著者 Helena-Bueno, K, Rybak, M.Y, Gagnon, M.G, Hill, C.H, Melnikov, S.V. 登録日 2023-12-07 公開日 2024-02-21 最終更新日 2024-03-13 実験手法 ELECTRON MICROSCOPY (2.62 Å) 主引用文献 A new family of bacterial ribosome hibernation factors. Nature, 626, 2024
5NDK	Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Prokhorova, I, Djumagulov, M, Urzhumtsev, A, Yusupov, M, Yusupova, G. 登録日 2017-03-08 公開日 2017-12-13 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.95 Å) 主引用文献 Aminoglycoside interactions and impacts on the eukaryotic ribosome. Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5NDJ	Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Prokhorova, I, Djumagulov, M, Urzhumtsev, A, Yusupov, M, Yusupova, G. 登録日 2017-03-08 公開日 2018-05-02 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (3.15 Å) 主引用文献 Aminoglycoside interactions and impacts on the eukaryotic ribosome. Proc. Natl. Acad. Sci. U.S.A., 114, 2017
8ONY	Human Methionine Aminopeptidase 2 at the 80S ribosome 分子名称: 28S rRNA, 5.8S rRNA, 60S ribosomal protein L19, ... 著者 Klein, M.A, Wild, K, Kisonaite, M, Sinning, I. 登録日 2023-04-04 公開日 2024-02-21 実験手法 ELECTRON MICROSCOPY (2.92 Å) 主引用文献 Methionine aminopeptidase 2 and its autoproteolysis product have different binding sites on the ribosome. Nat Commun, 15, 2024
3IY8	Leishmania tarentolae Mitonchondrial Ribosome small subunit 分子名称: 30S ribosomal protein S11, 30S ribosomal protein S12, 30S ribosomal protein S15, ... 著者 Sharma, M.R, Booth, T.M, Simpson, L, Maslov, D.A, Agrawal, R.K. 登録日 2009-04-16 公開日 2009-07-07 最終更新日 2024-02-21 実験手法 ELECTRON MICROSCOPY (14.1 Å) 主引用文献 Structure of a mitochondrial ribosome with minimal RNA Proc.Natl.Acad.Sci.USA, 106, 2009
9F1C	Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E 分子名称: 18S rRNA, 28S rRNA, 40S ribosomal protein S11, ... 著者 Yudin, D, Scaiola, A, Ban, N. 登録日 2024-04-18 公開日 2024-08-21 最終更新日 2024-10-02 実験手法 ELECTRON MICROSCOPY (3.78 Å) 主引用文献 NAC guides a ribosomal multienzyme complex for nascent protein processing. Nature, 633, 2024
9F1D	Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK 分子名称: 18S rRNA, 28S rRNA, 40S ribosomal protein S11, ... 著者 Yudin, D, Scaiola, A, Ban, N. 登録日 2024-04-18 公開日 2024-08-21 最終更新日 2024-10-02 実験手法 ELECTRON MICROSCOPY (3.26 Å) 主引用文献 NAC guides a ribosomal multienzyme complex for nascent protein processing. Nature, 633, 2024
1CQU	SOLUTION STRUCTURE OF THE N-TERMINAL DOMAIN OF RIBOSOMAL PROTEIN L9 分子名称: 50S RIBOSOMAL PROTEIN L9 著者 Hua, Y, Kuhlman, B, Hoffman, D, Raleigh, D.P. 登録日 1999-08-11 公開日 2002-04-27 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Effects of varying the local propensity to form secondary structure on the stability and folding kinetics of a rapid folding mixed alpha/beta protein: characterization of a truncation mutant of the N-terminal domain of the ribosomal protein L9. J.Mol.Biol., 289, 1999
7QGG	Neuronal RNA granules are ribosome complexes stalled at the pre-translocation state 分子名称: 40S ribosomal protein S10, 40S ribosomal protein S11, 40S ribosomal protein S12, ... 著者 Pulk, A, Kipper, K, Mansour, A. 登録日 2021-12-08 公開日 2022-10-26 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (2.86 Å) 主引用文献 Neuronal RNA granules are ribosome complexes stalled at the pre-translocation state. J.Mol.Biol., 434, 2022
7QIZ	Specific features and methylation sites of a plant 80S ribosome 分子名称: 1,4-DIAMINOBUTANE, 18S, 25S rRNA, ... 著者 Cottilli, P, Itoh, Y, Amunts, A. 登録日 2021-12-16 公開日 2022-08-03 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (2.38 Å) 主引用文献 Cryo-EM structure and rRNA modification sites of a plant ribosome. Plant Commun., 3, 2022
8BPO	Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 (TTC5) and S-phase Cyclin A Associated Protein residing in the ER (SCAPER) 分子名称: 28S ribosomal RNA, 5.8S ribosomal RNA, 5S ribosomal RNA, ... 著者 Hopfler, M, Absmeier, E, Passmore, L.A, Hegde, R.S. 登録日 2022-11-17 公開日 2023-07-05 最終更新日 2023-07-19 実験手法 ELECTRON MICROSCOPY (2.8 Å) 主引用文献 Mechanism of ribosome-associated mRNA degradation during tubulin autoregulation. Mol.Cell, 83, 2023
6SZS	Release factor-dependent ribosome rescue by BrfA in the Gram-positive bacterium Bacillus subtilis 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Muller, C, Beckert, B, Wilson, D.N. 登録日 2019-10-02 公開日 2019-12-04 最終更新日 2024-05-22 実験手法 ELECTRON MICROSCOPY (3.06 Å) 主引用文献 Release factor-dependent ribosome rescue by BrfA in the Gram-positive bacterium Bacillus subtilis. Nat Commun, 10, 2019
6R6P	Structure of XBP1u-paused ribosome nascent chain complex (rotated state) 分子名称: 18S rRNA, 28S ribosomal RNA, 40S ribosomal protein S12, ... 著者 Shanmuganathan, V, Cheng, J, Berninghausen, O, Beckmann, R. 登録日 2019-03-27 公開日 2019-07-10 最終更新日 2024-05-22 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Structural and mutational analysis of the ribosome-arresting human XBP1u. Elife, 8, 2019
7ACJ	Structure of translocated trans-translation complex on E. coli stalled ribosome. 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Guyomar, C, D'Urso, G, Chat, S, Giudice, E, Gillet, R. 登録日 2020-09-11 公開日 2021-08-18 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Structures of tmRNA and SmpB as they transit through the ribosome. Nat Commun, 12, 2021
6Z6N	Cryo-EM structure of human EBP1-80S ribosomes (focus on EBP1) 分子名称: 18S rRNA, 28S rRNA, 40S ribosomal protein S10, ... 著者 Wells, J.N, Buschauer, R, Mackens-Kiani, T, Best, K, Kratzat, H, Berninghausen, O, Becker, T, Cheng, J, Beckmann, R. 登録日 2020-05-28 公開日 2020-07-29 最終更新日 2024-05-22 実験手法 ELECTRON MICROSCOPY (2.9 Å) 主引用文献 Structure and function of yeast Lso2 and human CCDC124 bound to hibernating ribosomes. Plos Biol., 18, 2020
7PZY	Structure of the vacant Candida albicans 80S ribosome 分子名称: 1,4-DIAMINOBUTANE, 18S ribosomal RNA, 25S ribosomal RNA, ... 著者 Zgadzay, Y, Kolosova, O, Stetsenko, A, Jenner, L, Guskov, A, Yusupova, G, Yusupov, M. 登録日 2021-10-13 公開日 2022-05-18 最終更新日 2022-06-08 実験手法 ELECTRON MICROSCOPY (2.32 Å) 主引用文献 E-site drug specificity of the human pathogen Candida albicans ribosome. Sci Adv, 8, 2022
7Q0P	Structure of the Candida albicans 80S ribosome in complex with anisomycin 分子名称: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0, ... 著者 Kolosova, O, Zgadzay, Y, Stetsenko, A, Jenner, L, Guskov, A, Yusupova, G, Yusupov, M. 登録日 2021-10-15 公開日 2022-05-18 最終更新日 2022-06-08 実験手法 ELECTRON MICROSCOPY (2.77 Å) 主引用文献 E-site drug specificity of the human pathogen Candida albicans ribosome. Sci Adv, 8, 2022
7AC7	Structure of accomodated trans-translation complex on E. Coli stalled ribosome. 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Guyomar, C, D'Urso, G, Chat, S, Giudice, E, Gillet, R. 登録日 2020-09-10 公開日 2021-08-18 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (3.08 Å) 主引用文献 Structures of tmRNA and SmpB as they transit through the ribosome. Nat Commun, 12, 2021
6Z6M	Cryo-EM structure of human 80S ribosomes bound to EBP1, eEF2 and SERBP1 分子名称: 18S rRNA, 28S rRNA, 40S ribosomal protein S10, ... 著者 Wells, J.N, Buschauer, R, Mackens-Kiani, T, Best, K, Kratzat, H, Berninghausen, O, Becker, T, Cheng, J, Beckmann, R. 登録日 2020-05-28 公開日 2020-07-29 最終更新日 2024-05-22 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Structure and function of yeast Lso2 and human CCDC124 bound to hibernating ribosomes. Plos Biol., 18, 2020
8RDW	Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon and EF-Tu(GDP) (structure 3). 分子名称: 16S rRNA, 23S rRNA, 5S rRNA, ... 著者 Helena-Bueno, K, Rybak, M.Y, Gagnon, M.G, Hill, C.H, Melnikov, S.V. 登録日 2023-12-08 公開日 2024-02-21 最終更新日 2024-03-13 実験手法 ELECTRON MICROSCOPY (2.74 Å) 主引用文献 A new family of bacterial ribosome hibernation factors. Nature, 626, 2024
6SXO	Cryo-EM structure of the human Ebp1-ribosome complex 分子名称: 28S ribosomal RNA including ES27L-B (2839-3265), 5.8S ribosomal RNA, 60S ribosomal protein L19, ... 著者 Wild, K, Aleksic, M, Pfeffer, M, Sinning, I. 登録日 2019-09-26 公開日 2020-02-19 最終更新日 2024-05-22 実験手法 ELECTRON MICROSCOPY (3.3 Å) 主引用文献 MetAP-like Ebp1 occupies the human ribosomal tunnel exit and recruits flexible rRNA expansion segments. Nat Commun, 11, 2020
4V8D	Structure analysis of ribosomal decoding (cognate tRNA-tyr complex). 分子名称: 16S ribosomal RNA, 30S RIBOSOMAL PROTEIN S10, 30S RIBOSOMAL PROTEIN S11, ... 著者 Jenner, L, Demeshkina, N, Yusupov, M, Yusupova, G. 登録日 2011-12-07 公開日 2014-07-09 最終更新日 2024-10-16 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 A new understanding of the decoding principle on the ribosome. Nature, 484, 2012
7O1A	Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome complex stalled in response to L-tryptophan 分子名称: 30S ribosomal protein S10, 30S ribosomal protein S11, 30S ribosomal protein S12, ... 著者 van der Stel, A.X, Gordon, E.R, Sengupta, A, Martinez, A.K, Klepacki, D, Perry, T.N, Herrero del Valle, A, Vazquez-Laslop, N, Sachs, M.S, Cruz-Vera, L.R, Innis, C.A. 登録日 2021-03-29 公開日 2021-09-01 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (2.4 Å) 主引用文献 Structural basis for the tryptophan sensitivity of TnaC-mediated ribosome stalling. Nat Commun, 12, 2021
7O19	Cryo-EM structure of an Escherichia coli TnaC-ribosome complex stalled in response to L-tryptophan 分子名称: 30S ribosomal protein S10, 30S ribosomal protein S11, 30S ribosomal protein S12, ... 著者 van der Stel, A.X, Gordon, E.R, Sengupta, A, Martinez, A.K, Klepacki, D, Perry, T.N, Herrero del Valle, A, Vazquez-Laslop, N, Sachs, M.S, Cruz-Vera, L.R, Innis, C.A. 登録日 2021-03-29 公開日 2021-09-01 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (2.9 Å) 主引用文献 Structural basis for the tryptophan sensitivity of TnaC-mediated ribosome stalling. Nat Commun, 12, 2021
7O1C	Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome-RF2 complex stalled in response to L-tryptophan 分子名称: 30S ribosomal protein S10, 30S ribosomal protein S11, 30S ribosomal protein S12, ... 著者 van der Stel, A.X, Gordon, E.R, Sengupta, A, Martinez, A.K, Klepacki, D, Perry, T.N, Herrero del Valle, A, Vazquez-Laslop, N, Sachs, M.S, Cruz-Vera, L.R, Innis, C.A. 登録日 2021-03-29 公開日 2021-09-01 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (2.6 Å) 主引用文献 Structural basis for the tryptophan sensitivity of TnaC-mediated ribosome stalling. Nat Commun, 12, 2021

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