PDB: 45817 件ウェブページステータス検索Chemie searchBIRD

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5UZ3	Solution Structure of a DNA Dodecamer with 5-methylcytosine at the 9th position and 8-oxoguanine at the 10th position 分子名称: DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*(DMC)P*(8OG)P*CP*G)-3') 著者 Gruber, D.R, Hoppins, J.J, Miears, H.L, Endutkin, A.V, Zharkov, D.O, Smirnov, S.L. 登録日 2017-02-24 公開日 2017-05-31 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Oxidative damage to epigenetically methylated sites affects DNA stability, dynamics and enzymatic demethylation. Nucleic Acids Res., 46, 2018
5UZ2	Solution Structure of a DNA Dodecamer with 5-methylcytosine at the 3rd and 9th position and 8-oxoguanine at the 10th position 分子名称: DNA (5'-D(*CP*GP*(DMC)P*GP*AP*AP*TP*TP*(DMC)P*(8OG)P*CP*G)-3') 著者 Gruber, D.R, Hoppins, J.J, Miears, H.L, Endutkin, A.V, Zharkov, D.O, Smirnov, S.L. 登録日 2017-02-24 公開日 2017-03-29 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Oxidative damage to epigenetically methylated sites affects DNA stability, dynamics and enzymatic demethylation. Nucleic Acids Res., 46, 2018
8PJL	DNA duplex forming base triplets in minor groove 分子名称: DNA (5'-D(*AP*AP*CP*TP*GP*AP*GP*AP*GP*AP*CP*GP*TP*A)-3'), DNA (5'-D(*TP*AP*CP*GP*TP*CP*TP*CP*TP*CP*AP*GP*TP*C)-3'), MAGNESIUM ION, ... 著者 Abdullrahman, A, Cardin, C.J, Hall, J.P. 登録日 2023-06-23 公開日 2024-07-10 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 DNA duplex with triplets bases in minor groove To Be Published
7XH3	Dimeric G-quadruplex DNA Formed in the Proximal Promoter of VEGFR-2 分子名称: DNA (5'-D(*CP*CP*GP*GP*GP*TP*AP*CP*CP*CP*GP*G)-3') 著者 Zhang, Y, Lan, W, Wang, C, Cao, C. 登録日 2022-04-07 公開日 2023-02-15 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Dimeric G-quadruplex DNA Structure in the Proximal Promoter of VEGFR-2 Reveals a New Drug Target to Inhibit Tumor Angiogenesis. Chin.J.Chem., 40, 2022
6J37	DNA minidumbbell structure of two CTTG repeats 分子名称: DNA (5'-D(*CP*TP*TP*GP*CP*TP*TP*G)-3'), SODIUM ION 著者 Lam, S.L, Guo, P. 登録日 2019-01-04 公開日 2019-05-29 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Unprecedented hydrophobic stabilizations from a reverse wobble T·T mispair in DNA minidumbbell. J.Biomol.Struct.Dyn., 38, 2020
1ZI0	A Superhelical Spiral in Escherichia coli DNA Gyrase A C-terminal Domain Imparts Unidirectional Supercoiling Bias 分子名称: DNA gyrase subunit A 著者 Ruthenburg, A.J, Graybosch, D.M, Huetsch, J.C, Verdine, G.L. 登録日 2005-04-26 公開日 2005-05-24 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 A superhelical spiral in the Escherichia coli DNA gyrase A C-terminal domain imparts unidirectional supercoiling bias J.Biol.Chem., 280, 2005
5TGP	DNA 8mer containing two 2SeT modifications 分子名称: DNA/RNA (5'-R(*G)-D(P*(2ST))-R(P*G)-D(P*(2ST))-R(P*AP*CP*AP*C)-3') 著者 Zhang, W, Huang, Z. 登録日 2016-09-28 公開日 2017-10-18 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 DNA 8mer containing two 2SeT modifications To Be Published
1QL5	DNA DECAMER DUPLEX CONTAINING T5-T6 PHOTOADDUCT 分子名称: DNA (5'-D(*CP*GP*CP*AP*TP*+TP*AP*CP*GP*C)- 3'), DNA (5'-D(*GP*CP*GP*TP*TP*AP*TP*GP*CP*G)-3') 著者 Lee, J.-H, Hwang, G.-S, Choi, B.-S. 登録日 1999-08-24 公開日 2000-04-10 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Solution Structure of a DNA Decamer Duplex Containing the 3' T.T Base Pair of the Cis-Syn Cyclobutane Pyrimidine Dimer: Implication for the Mutagenic Property of the Cis-Syn Dimer. Nucleic Acids Res., 28, 2000
1ZHU	DNA (5'-D(*CP*AP*AP*TP*GP*CP*AP*AP*TP*G)-3'), NMR, 10 STRUCTURES 分子名称: DNA (5'-D(*CP*AP*AP*TP*GP*CP*AP*AP*TP*G)-3') 著者 Zhu, L, Chou, S.-H, Xu, J, Reid, B.R. 登録日 1996-01-24 公開日 1996-07-11 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Structure of a single-cytidine hairpin loop formed by the DNA triplet GCA. Nat.Struct.Biol., 2, 1995
1BWG	DNA TRIPLEX WITH 5' AND 3' JUNCTIONS, NMR, 10 STRUCTURES 分子名称: DNA (5'-D(*CP*TP*CP*TP*CP*T)-3'), DNA (5'-D(*GP*AP*CP*TP*GP*AP*GP*AP*GP*AP*CP*GP*TP*A)-3'), DNA (5'-D(*TP*AP*CP*GP*TP*CP*TP*CP*TP*CP*AP*GP*TP*C)-3') 著者 Asensio, J.L, Brown, T, Lane, A.N. 登録日 1998-09-22 公開日 1999-03-23 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Solution conformation of a parallel DNA triple helix with 5' and 3' triplex-duplex junctions. Structure Fold.Des., 7, 1999
1CFL	DNA DECAMER DUPLEX CONTAINING T5-T6 PHOTOADDUCT 分子名称: DNA (5'-D(*CP*GP*CP*AP*(64T)P*TP*AP*CP*GP*C)-3'), DNA (5'-D(*GP*CP*GP*TP*GP*AP*TP*GP*CP*G)-3') 著者 Lee, J.-H, Hwang, G.-S, Choi, B.-S. 登録日 1999-03-19 公開日 1999-05-28 最終更新日 2023-12-27 実験手法 SOLUTION NMR 主引用文献 Solution structure of a DNA decamer duplex containing the stable 3' T.G base pair of the pyrimidine(6-4)pyrimidone photoproduct [(6-4) adduct]: implications for the highly specific 3' T --> C transition of the (6-4) adduct. Proc.Natl.Acad.Sci.USA, 96, 1999
2M3P	DNA containing a cluster of 8-oxo-guanine and abasic site lesion: alpha anomer 分子名称: DNA (5'-D(*CP*GP*CP*TP*CP*(ORP)P*CP*AP*CP*GP*C)-3'), DNA (5'-D(*GP*CP*GP*TP*GP*GP*GP*AP*(8OG)P*CP*G)-3') 著者 Zalesak, J, Jourdan, M, Lourdin, M, Constant, J. 登録日 2013-01-25 公開日 2014-01-08 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Structure and dynamics of DNA duplexes containing a cluster of mutagenic 8-oxoguanine and abasic site lesions. J.Mol.Biol., 426, 2014
2M40	DNA containing a cluster of 8-oxo-guanine and THF lesion 分子名称: DNA (5'-D(*CP*GP*CP*TP*CP*(3DR)P*CP*AP*CP*GP*C)-3'), DNA (5'-D(*GP*CP*GP*TP*GP*GP*GP*AP*(8OG)P*CP*G)-3') 著者 Zalesak, J, Jourdan, M, Constant, J, Lourdin, M. 登録日 2013-01-28 公開日 2014-01-08 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Structure and dynamics of DNA duplexes containing a cluster of mutagenic 8-oxoguanine and abasic site lesions. J.Mol.Biol., 426, 2014
2M43	DNA containing a cluster of 8-oxo-guanine and abasic site lesion: alpha anomer (AP6, 8OG 14) 分子名称: DNA (5'-D(*CP*GP*CP*TP*CP*(ORP)P*CP*AP*CP*GP*C)-3'), DNA (5'-D(*GP*CP*(8OG)P*TP*GP*GP*GP*AP*GP*CP*G)-3') 著者 Zalesak, J, Jourdan, M, Constant, J, Lourdin, M. 登録日 2013-01-29 公開日 2014-01-08 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Structure and dynamics of DNA duplexes containing a cluster of mutagenic 8-oxoguanine and abasic site lesions. J.Mol.Biol., 426, 2014
2M44	DNA containing a cluster of 8-oxo-guanine and abasic site lesion: beta anomer (6AP, 8OG14) 分子名称: DNA (5'-D(*CP*GP*CP*TP*CP*(AAB)P*CP*AP*CP*GP*C)-3'), DNA (5'-D(*GP*CP*(8OG)P*TP*GP*GP*GP*AP*GP*CP*G)-3') 著者 Zalesak, J, Jourdan, M, Constant, J, Lourdin, M. 登録日 2013-01-29 公開日 2014-01-08 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Structure and dynamics of DNA duplexes containing a cluster of mutagenic 8-oxoguanine and abasic site lesions. J.Mol.Biol., 426, 2014
2M3Y	DNA containing a cluster of 8-oxo-guanine and abasic site lesion: beta anomer 分子名称: DNA (5'-D(*CP*GP*CP*TP*CP*(AAB)P*CP*AP*CP*GP*C)-3'), DNA (5'-D(*GP*CP*GP*TP*GP*GP*GP*AP*(8OG)P*CP*G)-3') 著者 Zalesak, J, Jourdan, M, Constant, J, Lourdin, M. 登録日 2013-01-28 公開日 2014-01-08 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Structure and dynamics of DNA duplexes containing a cluster of mutagenic 8-oxoguanine and abasic site lesions. J.Mol.Biol., 426, 2014
2KEB	NMR solution structure of the N-terminal domain of the DNA polymerase alpha p68 subunit 分子名称: DNA polymerase subunit alpha B 著者 Huang, H, Weiner, B.E, Zhang, H, Fuller, B.E, Gao, Y, Wile, B.M, Chazin, W.J, Fanning, E. 登録日 2009-01-28 公開日 2010-02-02 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Structure of a DNA polymerase alpha-primase domain that docks on the SV40 helicase and activates the viral primosome. J.Biol.Chem., 285, 2010
4JWE	Crystal structure of the substrate binding domain of E.coli DnaK in complex with sheep Bac7(1-21) 分子名称: Cathelicidin-3, Chaperone protein DnaK, SULFATE ION 著者 Zahn, M, Straeter, N. 登録日 2013-03-27 公開日 2013-11-13 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Structural Identification of DnaK Binding Sites within Bovine and Sheep Bactenecin Bac7. Protein Pept.Lett., 21, 2014
4JWI	Crystal structure of the substrate binding domain of E.coli DnaK in complex with sheep Bac7(35-43) 分子名称: Cathelicidin-3, Chaperone protein DnaK, SULFATE ION 著者 Zahn, M, Straeter, N. 登録日 2013-03-27 公開日 2013-11-13 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Structural Identification of DnaK Binding Sites within Bovine and Sheep Bactenecin Bac7. Protein Pept.Lett., 21, 2014
4JWC	Crystal structure of the substrate binding domain of E.coli DnaK in complex with bovine Bac7(1-16) 分子名称: Cathelicidin-3, Chaperone protein DnaK, SULFATE ION 著者 Zahn, M, Straeter, N. 登録日 2013-03-27 公開日 2013-11-13 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Structural Identification of DnaK Binding Sites within Bovine and Sheep Bactenecin Bac7. Protein Pept.Lett., 21, 2014
4JWD	Crystal structure of the substrate binding domain of E.coli DnaK in complex with bovine Bac7(15-28) 分子名称: Cathelicidin-3, Chaperone protein DnaK, SULFATE ION 著者 Zahn, M, Straeter, N. 登録日 2013-03-27 公開日 2013-11-13 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Structural Identification of DnaK Binding Sites within Bovine and Sheep Bactenecin Bac7. Protein Pept.Lett., 21, 2014
4F00	Crystal structure of the substrate binding domain of E.coli DnaK in complex with an apidaecin fragment from the bumblebee (residues 3 to 11) 分子名称: Apidaecin, Chaperone protein DnaK 著者 Zahn, M, Straeter, N. 登録日 2012-05-03 公開日 2013-04-17 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Structural Studies on the Forward and Reverse Binding Modes of Peptides to the Chaperone DnaK. J.Mol.Biol., 425, 2013
1AC9	SOLUTION STRUCTURE OF A DNA DECAMER CONTAINING THE ANTIVIRAL DRUG GANCICLOVIR: COMBINED USE OF NMR, RESTRAINED MOLECULAR DYNAMICS, AND FULL RELAXATION REFINEMENT, 6 STRUCTURES 分子名称: DNA 著者 Foti, M, Marshalko, S, Schurter, E, Kumar, S, Beardsley, G.P, Schweitzer, B.I. 登録日 1997-02-17 公開日 1997-07-07 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Solution structure of a DNA decamer containing the antiviral drug ganciclovir: combined use of NMR, restrained molecular dynamics, and full relaxation matrix refinement. Biochemistry, 36, 1997
4UQM	Crystal structure determination of uracil-DNA N-glycosylase (UNG) from Deinococcus radiodurans in complex with DNA - new insights into the role of the Leucine-loop for damage recognition and repair 分子名称: 5'-D(*CP*CP*TP*AP*TP*CP*CP*AP*AAB*GP*TP*CP*TP*CP*CP*G)-3', 5'-D(*GP*CP*GP*GP*AP*GP*AP*CP*AP*TP*GP*GP*AP*CP*AP*G)-3', CHLORIDE ION, ... 著者 Pedersen, H.L, Johnson, K.A, McVey, C.E, Leiros, I, Moe, E. 登録日 2014-06-24 公開日 2015-08-12 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (1.35 Å) 主引用文献 Structure determination of uracil-DNA N-glycosylase from Deinococcus radiodurans in complex with DNA. Acta Crystallogr. D Biol. Crystallogr., 71, 2015
3JRB	Crystal structure of Fis bound to 27 bp DNA F24 containing T-tract at center 分子名称: DNA (27-MER), DNA-binding protein fis 著者 Stella, S, Cascio, D, Johnson, R.C. 登録日 2009-09-08 公開日 2010-04-28 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 The shape of the DNA minor groove directs binding by the DNA-bending protein Fis. Genes Dev., 24, 2010

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