PDB: 160289 件ウェブページステータス検索Chemie searchBIRD

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2R0N	The effect of a Glu370Asp mutation in Glutaryl-CoA Dehydrogenase on Proton Transfer to the Dienolate Intermediate 分子名称: 3-thiaglutaryl-CoA, FLAVIN-ADENINE DINUCLEOTIDE, Glutaryl-CoA dehydrogenase 著者 Rao, K.S, Albro, M, Fu, Z, Narayanan, B, Baddam, S, Lee, H.J, Kim, J.J, Frerman, F.E. 登録日 2007-08-20 公開日 2008-04-22 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 The effect of a Glu370Asp mutation in glutaryl-CoA dehydrogenase on proton transfer to the dienolate intermediate. Biochemistry, 46, 2007
2R0M	The effect of a Glu370Asp Mutation in Glutaryl-CoA Dehydrogenase on Proton Transfer to the Dienolate Intermediate 分子名称: 4-nitrobutanoic acid, FLAVIN-ADENINE DINUCLEOTIDE, Glutaryl-CoA dehydrogenase 著者 Rao, K.S, Fu, Z, Albro, M, Narayanan, B, Baddam, S, Lee, H.J, Kim, J.J, Frerman, F.E. 登録日 2007-08-20 公開日 2008-04-22 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 The effect of a Glu370Asp mutation in glutaryl-CoA dehydrogenase on proton transfer to the dienolate intermediate. Biochemistry, 46, 2007
5I4N	Crystal Structure of the E596A V617F Mutant JAK2 Pseudokinase Domain Bound to Mg-ATP 分子名称: ADENOSINE-5'-TRIPHOSPHATE, GLYCEROL, MAGNESIUM ION, ... 著者 Shiau, A.K, Motamedi, A. 登録日 2016-02-12 公開日 2016-04-13 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.54 Å) 主引用文献 Uncoupling JAK2 V617F activation from cytokine-induced signalling by modulation of JH2 alpha C helix. Biochem.J., 473, 2016
2NO5	Crystal Structure analysis of a Dehalogenase with intermediate complex 分子名称: (2S)-2-CHLOROPROPANOIC ACID, (S)-2-haloacid dehalogenase IVA, CHLORIDE ION, ... 著者 Schmidberger, J.W, Wilce, M.C.J. 登録日 2006-10-24 公開日 2007-09-25 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Crystal structures of the substrate free-enzyme, and reaction intermediate of the HAD superfamily member, haloacid dehalogenase DehIVa from Burkholderia cepacia MBA4 J.Mol.Biol., 368, 2007
3RTY	Structure of an Enclosed Dimer Formed by The Drosophila Period Protein 分子名称: 2,3-DIHYDROXY-1,4-DITHIOBUTANE, Period circadian protein 著者 King, H.A, Hoelz, A, Crane, B.R, Young, M.W. 登録日 2011-05-04 公開日 2011-12-21 実験手法 X-RAY DIFFRACTION (2.85 Å) 主引用文献 Structure of an enclosed dimer formed by the Drosophila period protein. J.Mol.Biol., 413, 2011
3D1K	R/T intermediate quaternary structure of an antarctic fish hemoglobin in an alpha(CO)-beta(pentacoordinate) state 分子名称: ACETYL GROUP, CARBON MONOXIDE, Hemoglobin subunit alpha-1, ... 著者 Vitagliano, L, Vergara, A, Bonomi, G, Merlino, A, Mazzarella, L. 登録日 2008-05-06 公開日 2008-08-05 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (1.25 Å) 主引用文献 Spectroscopic and crystallographic characterization of a tetrameric hemoglobin oxidation reveals structural features of the functional intermediate relaxed/tense state. J.Am.Chem.Soc., 130, 2008
3O91	High resolution crystal structures of Streptococcus pneumoniae nicotinamidase with trapped intermediates provide insights into catalytic mechanism and inhibition by aldehydes 分子名称: ZINC ION, nicotinamidase 著者 French, J.B, Cen, Y, Sauve, A.A, Ealick, S.E. 登録日 2010-08-03 公開日 2011-01-12 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (1.63 Å) 主引用文献 High-resolution crystal structures of Streptococcus pneumoniae nicotinamidase with trapped intermediates provide insights into the catalytic mechanism and inhibition by aldehydes . Biochemistry, 49, 2010
3O90	High resolution crystal structures of Streptococcus pneumoniae nicotinamidase with trapped intermediates provide insights into catalytic mechanism and inhibition by aldehydes 分子名称: ZINC ION, nicotinamidase 著者 French, J.B, Cen, Y, Sauve, A.A, Ealick, S.E. 登録日 2010-08-03 公開日 2011-01-12 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.94 Å) 主引用文献 High-resolution crystal structures of Streptococcus pneumoniae nicotinamidase with trapped intermediates provide insights into the catalytic mechanism and inhibition by aldehydes . Biochemistry, 49, 2010
2P04	2.1 Ang structure of the dimerized PAS domain of signal transduction histidine kinase from Nostoc punctiforme PCC 73102 with homology to the H-NOXA/H-NOBA domain of the soluble guanylyl cyclase 分子名称: signal transduction histidine kinase 著者 van den Akker, F, Ma, X. 登録日 2007-02-28 公開日 2007-11-13 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.11 Å) 主引用文献 PAS-mediated dimerization of soluble guanylyl cyclase revealed by signal transduction histidine kinase domain crystal structure. J.Biol.Chem., 283, 2008
3O92	High resolution crystal structures of Streptococcus pneumoniae nicotinamidase with trapped intermediates provide insights into catalytic mechanism and inhibition by aldehydes 分子名称: ZINC ION, nicotinamidase 著者 French, J.B, Cen, Y, Sauve, A.A, Ealick, S.E. 登録日 2010-08-03 公開日 2011-01-12 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 High-resolution crystal structures of Streptococcus pneumoniae nicotinamidase with trapped intermediates provide insights into the catalytic mechanism and inhibition by aldehydes . Biochemistry, 49, 2010
3O94	High resolution crystal structures of Streptococcus pneumoniae nicotinamidase with trapped intermediates provide insights into catalytic mechanism and inhibition by aldehydes 分子名称: NICOTINAMIDE, ZINC ION, nicotinamidase 著者 French, J.B, Cen, Y, Sauve, A.A, Ealick, S.E. 登録日 2010-08-03 公開日 2011-01-12 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 High-resolution crystal structures of Streptococcus pneumoniae nicotinamidase with trapped intermediates provide insights into the catalytic mechanism and inhibition by aldehydes . Biochemistry, 49, 2010
2OWW	Covalent intermediate in amylomaltase in complex with the acceptor analog 4-deoxyglucose 分子名称: 4,6-dideoxy-4-{[(1S,4R,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, 4-alpha-glucanotransferase, 4-deoxy-alpha-D-glucopyranose, ... 著者 Barends, T.R.M, Bultema, J.B, Kaper, T, van der Maarel, M.J.E.C, Dijkhuizen, L, Dijkstra, B.W. 登録日 2007-02-17 公開日 2007-04-03 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Three-way stabilization of the covalent intermediate in amylomaltase, an alpha-amylase-like transglycosylase. J.Biol.Chem., 282, 2007
2OWC	Structure of a covalent intermediate in Thermus thermophilus amylomaltase 分子名称: 4,6-dideoxy-4-{[(1S,4R,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, 4-alpha-glucanotransferase, GLYCEROL, ... 著者 Barends, T.R.M, Bultema, J.B, Kaper, T, van der Maarel, M.J.E.C, Dijkhuizen, L, Dijkstra, B.W. 登録日 2007-02-16 公開日 2007-04-03 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.05 Å) 主引用文献 Three-way stabilization of the covalent intermediate in amylomaltase, an alpha-amylase-like transglycosylase. J.Biol.Chem., 282, 2007
2PQ9	E. coli EPSPS liganded with (R)-difluoromethyl tetrahedral reaction intermediate analog 分子名称: (3R,4S,5R)-5-[(1R)-1-CARBOXY-2,2-DIFLUORO-1-(PHOSPHONOOXY)ETHOXY]-4-HYDROXY-3-(PHOSPHONOOXY)CYCLOHEX-1-ENE-1-CARBOXYLIC ACID, 3-phosphoshikimate 1-carboxyvinyltransferase, FORMIC ACID 著者 Healy-Fried, M.L, Funke, T, Han, H, Schonbrunn, E. 登録日 2007-05-01 公開日 2008-03-11 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Differential inhibition of class I and class II 5-enolpyruvylshikimate-3-phosphate synthases by tetrahedral reaction intermediate analogues. Biochemistry, 46, 2007
2ZCT	Oxidation of archaeal peroxiredoxin involves a hypervalent sulfur intermediate 分子名称: Probable peroxiredoxin 著者 Nakamura, T, Hagihara, Y, Abe, M, Inoue, T, Yamamoto, T, Matsumura, H. 登録日 2007-11-12 公開日 2008-05-27 最終更新日 2021-11-10 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Oxidation of archaeal peroxiredoxin involves a hypervalent sulfur intermediate Proc.Natl.Acad.Sci.Usa, 105, 2008
3O93	High resolution crystal structures of Streptococcus pneumoniae nicotinamidase with trapped intermediates provide insights into catalytic mechanism and inhibition by aldehydes 分子名称: ZINC ION, nicotinamidase 著者 French, J.B, Cen, Y, Sauve, A.A, Ealick, S.E. 登録日 2010-08-03 公開日 2011-01-12 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (1.84 Å) 主引用文献 High-resolution crystal structures of Streptococcus pneumoniae nicotinamidase with trapped intermediates provide insights into the catalytic mechanism and inhibition by aldehydes . Biochemistry, 49, 2010
5TCU	Methicillin sensitive Staphylococcus aureus 70S ribosome 分子名称: 16S RRNA, 23S RRNA, 30S ribosomal protein S10, ... 著者 Eyal, Z, Ahmed, T, Belousoff, N, Mishra, S, Matzov, D, Bashan, A, Zimmerman, E, Lithgow, T, Bhushan, S, Yonath, A. 登録日 2016-09-15 公開日 2017-05-24 最終更新日 2019-12-18 実験手法 ELECTRON MICROSCOPY (3.9 Å) 主引用文献 Structural Basis for Linezolid Binding Site Rearrangement in the Staphylococcus aureus Ribosome. MBio, 8, 2017
2P08	Structure of the N-terminally truncated PAS domain of signal transduction histidine kinase from Nostoc punctiforme PCC 73102 with homology to the H-NOXA/H-NOBA domain of the soluble guanylyl cyclase 分子名称: SULFATE ION, signal transduction histidine kinase 著者 van den Akker, F, Ma, X. 登録日 2007-02-28 公開日 2007-11-13 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 PAS-mediated dimerization of soluble guanylyl cyclase revealed by signal transduction histidine kinase domain crystal structure. J.Biol.Chem., 283, 2008
5RNT	X-RAY ANALYSIS OF CUBIC CRYSTALS OF THE COMPLEX FORMED BETWEEN RIBONUCLEASE T1 AND GUANOSINE-3',5'-BISPHOSPHATE 分子名称: GUANOSINE-3',5'-DIPHOSPHATE, RIBONUCLEASE T1 著者 Saenger, W, Heinemann, U, Lenz, A. 登録日 1991-03-28 公開日 1993-01-15 最終更新日 2017-11-29 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 X-ray analysis of cubic crystals of the complex formed between ribonuclease T1 and guanosine-3',5'-bisphosphate. Acta Crystallogr.,Sect.B, 47, 1991
2LBY	G-quadruplex structure formed at the 5'-end of NHEIII_1 element in human c-MYC promoter 分子名称: DNA (5'-D(*TP*AP*GP*GP*GP*AP*GP*GP*GP*TP*AP*GP*GP*GP*AP*GP*GP*GP*T)-3') 著者 Mathad, R, Hatzakis, E, Yang, D. 登録日 2011-04-07 公開日 2012-02-22 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 c-MYC promoter G-quadruplex formed at the 5'-end of NHE III1 element: insights into biological relevance and parallel-stranded G-quadruplex stability. Nucleic Acids Res., 39, 2011
5DWX	Structural Insights into the Quadruplex-Duplex 3' Interface formed from a Telomeric Repeat - TLOOP 分子名称: DNA (24-MER), DNA complementary strand, POTASSIUM ION 著者 Parkinson, G.N, Russo Krauss, I. 登録日 2015-09-23 公開日 2016-01-20 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.71 Å) 主引用文献 Structural Insights into the Quadruplex-Duplex 3' Interface Formed from a Telomeric Repeat: A Potential Molecular Target. J.Am.Chem.Soc., 138, 2016
2MY2	Snu17p-Bud13p structure intermediate during RES complex assembly 分子名称: Pre-mRNA-splicing factor CWC26, U2 snRNP component IST3 著者 Wysoczanski, P, Becker, S, Zweckstetter, M. 登録日 2015-01-19 公開日 2015-08-12 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Structures of intermediates during RES complex assembly. Sci Rep, 5, 2015
2DRW	The crystal structutre of D-amino acid amidase from Ochrobactrum anthropi SV3 分子名称: BARIUM ION, D-Amino acid amidase 著者 Okazaki, S, Suzuki, A, Komeda, H, Asano, Y, Yamane, T. 登録日 2006-06-15 公開日 2006-07-04 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Crystal Structure and Functional Characterization of a D-Stereospecific Amino Acid Amidase from Ochrobactrum anthropi SV3, a New Member of the Penicillin-recognizing Proteins J.Mol.Biol., 368, 2007
2DNS	The crystal structure of D-amino acid amidase from Ochrobactrum anthropi SV3 complexed with D-Phenylalanine 分子名称: BARIUM ION, D-PHENYLALANINE, D-amino acid amidase 著者 Okazaki, S, Suzuki, A, Komeda, H, Asano, Y, Yamane, T. 登録日 2006-04-26 公開日 2006-05-09 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Crystal Structure and Functional Characterization of a D-Stereospecific Amino Acid Amidase from Ochrobactrum anthropi SV3, a New Member of the Penicillin-recognizing Proteins J.Mol.Biol., 368, 2007
1FP2	CRYSTAL STRUCTURE ANALYSIS OF ISOFLAVONE O-METHYLTRANSFERASE 分子名称: 4'-HYDROXY-7-METHOXYISOFLAVONE, ISOFLAVONE O-METHYLTRANSFERASE, S-ADENOSYL-L-HOMOCYSTEINE 著者 Zubieta, C, Dixon, R.A, Noel, J.P. 登録日 2000-08-29 公開日 2001-03-07 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.4 Å) 主引用文献 Structures of two natural product methyltransferases reveal the basis for substrate specificity in plant O-methyltransferases. Nat.Struct.Biol., 8, 2001

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