PDB: 42250 件ウェブページステータス検索Chemie searchBIRD

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2LG0	structure of the duplex containing (5'S)-8,5'-cyclo-2'-deoxyadenosine 分子名称: DNA (5'-D(*AP*CP*AP*AP*AP*CP*AP*TP*GP*CP*AP*C)-3'), DNA (5'-D(*GP*TP*GP*CP*(02I)P*TP*GP*TP*TP*TP*GP*T)-3') 著者 Huang, H, Das, R.S, Basu, A, Stone, M.P. 登録日 2011-07-18 公開日 2012-06-27 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Structure of (5'S)-8,5'-cyclo-2'-deoxyguanosine in DNA. J.Am.Chem.Soc., 133, 2011
2NAM	Full-length WT SOD1 in DPC MICELLE 分子名称: Superoxide dismutase [Cu-Zn] 著者 Lim, L, Song, J. 登録日 2016-01-06 公開日 2016-12-14 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 SALS-linked WT-SOD1 adopts a highly similar helical conformation as FALS-causing L126Z-SOD1 in a membrane environment Biochim.Biophys.Acta, 1858, 2016
2NNX	Crystal Structure of the H46R, H48Q double mutant of human [Cu-Zn] Superoxide Dismutase 分子名称: SULFATE ION, SUPEROXIDE DISMUTASE [CU-ZN], ZINC ION 著者 Schuermann, J.P, Hart, P.J. 登録日 2006-10-24 公開日 2006-11-07 最終更新日 2024-11-13 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Disease-associated mutations at copper ligand histidine residues of superoxide dismutase 1 diminish the binding of copper and compromise dimer stability J.Biol.Chem., 282, 2007
6LOS	Crystal structure of mouse PEDF in complex with heterotrimeric collagen model peptide. 分子名称: Collagen model peptide, type I, alpha 1, ... 著者 Kawahara, K, Maruno, T, Oki, H, Yoshida, T, Ohkubo, T, Koide, T, Kobayashi, Y. 登録日 2020-01-07 公開日 2020-09-02 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.476 Å) 主引用文献 Spatiotemporal regulation of PEDF signaling by type I collagen remodeling. Proc.Natl.Acad.Sci.USA, 117, 2020
6OUL	Cryo-EM structure of Escherichia coli RNAP polymerase bound to rpsTP2 promoter DNA 分子名称: CHAPSO, DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ... 著者 Chen, J, Chiu, C.E, Campbell, E.A, Darst, S.A. 登録日 2019-05-04 公開日 2020-02-26 最終更新日 2024-03-20 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 E. coliTraR allosterically regulates transcription initiation by altering RNA polymerase conformation. Elife, 8, 2019
5U6R	E. coli CTP synthase CC mutant filament (product-bound) 分子名称: ADENOSINE-5'-DIPHOSPHATE, CTP synthase, CYTIDINE-5'-TRIPHOSPHATE 著者 Kollman, J.M, Lynch, E.M. 登録日 2016-12-08 公開日 2017-04-26 最終更新日 2024-10-09 実験手法 ELECTRON MICROSCOPY (5.7 Å) 主引用文献 Human CTP synthase filament structure reveals the active enzyme conformation. Nat. Struct. Mol. Biol., 24, 2017
5UAH	Escherichia coli RNA polymerase and Rifampin complex, RpoB D516V mutant 分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... 著者 Molodtsov, V, Scharf, N.T, Stefan, M.A, Garcia, G.A, Murakami, K.S. 登録日 2016-12-19 公開日 2017-01-11 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (4.1 Å) 主引用文献 Structural basis for rifamycin resistance of bacterial RNA polymerase by the three most clinically important RpoB mutations found in Mycobacterium tuberculosis. Mol. Microbiol., 103, 2017
6P18	Q21 transcription antitermination complex: loading complex 分子名称: DNA (67-MER) fragment carrying phage-21 pR' promoter and pause element, nontemplate strand, template strand, ... 著者 Yin, Z, Ebright, R.H. 登録日 2019-05-19 公開日 2019-06-26 最終更新日 2024-03-20 実験手法 ELECTRON MICROSCOPY (3.5 Å) 主引用文献 Structural basis of Q-dependent antitermination. Proc.Natl.Acad.Sci.USA, 116, 2019
6PMJ	Sigm28-transcription initiation complex with specific promoter at the state 2 分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... 著者 Liu, B, Shi, W. 登録日 2019-07-02 公開日 2020-05-13 最終更新日 2024-03-20 実験手法 ELECTRON MICROSCOPY (3.91 Å) 主引用文献 Structural basis of bacterial sigma28-mediated transcription reveals roles of the RNA polymerase zinc-binding domain. Embo J., 39, 2020
5GMV	LC3B-FUNDC1 complex 分子名称: Microtubule-associated proteins 1A/1B light chain 3B, Peptide from FUN14 domain-containing protein 1 著者 Lv, M, Wang, C, Li, F. 登録日 2016-07-17 公開日 2017-03-08 最終更新日 2024-11-06 実験手法 X-RAY DIFFRACTION (2.25 Å) 主引用文献 Structural insights into the recognition of phosphorylated FUNDC1 by LC3B in mitophagy Protein Cell, 8, 2017
6PMO	Co-crystal structure of the Geobacillus kaustophilus glyQ T-box riboswitch discriminator domain in complex with tRNA-Gly 分子名称: IRIDIUM ION, MAGNESIUM ION, T-box riboswitch discriminator, ... 著者 Li, S, Zhang, J. 登録日 2019-07-02 公開日 2019-11-20 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.65703368 Å) 主引用文献 Structural basis of amino acid surveillance by higher-order tRNA-mRNA interactions. Nat.Struct.Mol.Biol., 26, 2019
5UAL	Escherichia coli RNA polymerase and Rifampin complex, RpoB S531L mutant 分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... 著者 Molodtsov, V, Scharf, N.T, Stefan, M.A, Garcia, G.A, Murakami, K.S. 登録日 2016-12-19 公開日 2017-01-11 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (3.887 Å) 主引用文献 Structural basis for rifamycin resistance of bacterial RNA polymerase by the three most clinically important RpoB mutations found in Mycobacterium tuberculosis. Mol. Microbiol., 103, 2017
6M54	Human apo ferritin frozen on TEM grid with Amorphous nickel titanium alloy supporting film 分子名称: FE (II) ION, Ferritin heavy chain 著者 Huang, X, Zhang, L, Wen, Z, Chen, H, Li, S, Ji, G, Yin, C, Sun, F. 登録日 2020-03-09 公開日 2020-05-13 最終更新日 2024-03-27 実験手法 ELECTRON MICROSCOPY (2.4 Å) 主引用文献 Amorphous nickel titanium alloy film: A new choice for cryo electron microscopy sample preparation. Prog.Biophys.Mol.Biol., 156, 2020
5UAC	Escherichia coli RNA polymerase and Rifampin complex, wild-type 分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... 著者 Molodtsov, V, Scharf, N.T, Stefan, M.A, Garcia, G.A, Murakami, K.S. 登録日 2016-12-19 公開日 2017-01-18 最終更新日 2024-11-06 実験手法 X-RAY DIFFRACTION (3.8 Å) 主引用文献 Structural basis for rifamycin resistance of bacterial RNA polymerase by the three most clinically important RpoB mutations found in Mycobacterium tuberculosis. Mol. Microbiol., 103, 2017
6PC1	Crystal structure of Helicobacter pylori PPX/GppA (E143A) in complex with ppGpp 分子名称: (2S)-2-hydroxybutanedioic acid, 1,2-ETHANEDIOL, GUANOSINE-5',3'-TETRAPHOSPHATE, ... 著者 Song, H, Wang, C, Shaw, G.X, Ji, X. 登録日 2019-06-15 公開日 2019-11-20 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2.76 Å) 主引用文献 Structure and activity of PPX/GppA homologs from Escherichia coli and Helicobacter pylori. Febs J., 287, 2020
5UI8	structure of sigmaN-holoenzyme 分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... 著者 Darst, S.A, Campbell, E.A. 登録日 2017-01-13 公開日 2017-02-22 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (3.76 Å) 主引用文献 Crystal structure of Aquifex aeolicus sigma (N) bound to promoter DNA and the structure of sigma (N)-holoenzyme. Proc. Natl. Acad. Sci. U.S.A., 114, 2017
6PC0	Crystal structure of Helicobacter pylori PPX/GppA 分子名称: (2S)-2-hydroxybutanedioic acid, 1,2-ETHANEDIOL, D-MALATE, ... 著者 Song, H, Wang, C, Shaw, G.X, Ji, X. 登録日 2019-06-15 公開日 2019-11-20 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Structure and activity of PPX/GppA homologs from Escherichia coli and Helicobacter pylori. Febs J., 287, 2020
6PBZ	Crystal structure of Escherichia coli GppA 分子名称: CHLORIDE ION, Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase 著者 Song, H, Shaw, G.X, Wang, C, Ji, X. 登録日 2019-06-15 公開日 2019-11-20 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.475 Å) 主引用文献 Structure and activity of PPX/GppA homologs from Escherichia coli and Helicobacter pylori. Febs J., 287, 2020
6P5O	The structure of rat cytosolic PEPCK in complex with 3-(carboxymethylthiol)-picolinic acid 分子名称: 3-[(carboxymethyl)sulfanyl]pyridine-2-carboxylic acid, MANGANESE (II) ION, Phosphoenolpyruvate carboxykinase, ... 著者 Mcleod, M.J, Holyoak, T. 登録日 2019-05-30 公開日 2019-09-18 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (1.49 Å) 主引用文献 Characterization of 3-[(Carboxymethyl)thio]picolinic Acid: A Novel Inhibitor of Phosphoenolpyruvate Carboxykinase. Biochemistry, 58, 2019
6PB4	The E. coli class-II CAP-dependent transcription activation complex with de novo RNA transcript at the state 2 分子名称: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ... 著者 Liu, B, Shi, W. 登録日 2019-06-13 公開日 2020-03-18 最終更新日 2024-03-20 実験手法 ELECTRON MICROSCOPY (4.35 Å) 主引用文献 Visualization of two architectures in class-II CAP-dependent transcription activation Plos Biol., 18, 2020
6M52	Human apo ferritin frozen on TEM grid with amorphous carbon supporting film 分子名称: FE (II) ION, Ferritin heavy chain 著者 Huang, X, Zhang, L, Wen, Z, Chen, H, Li, S, Ji, G, Yin, C, Sun, F. 登録日 2020-03-09 公開日 2020-05-13 最終更新日 2024-03-27 実験手法 ELECTRON MICROSCOPY (2.6 Å) 主引用文献 Amorphous nickel titanium alloy film: A new choice for cryo electron microscopy sample preparation. Prog.Biophys.Mol.Biol., 156, 2020
5V9H	Structure of the H477R variant of rat cytosolic PEPCK in complex with phosphoglycolate and GDP. 分子名称: 2-PHOSPHOGLYCOLIC ACID, GUANOSINE-5'-DIPHOSPHATE, MANGANESE (II) ION, ... 著者 Holyoak, T, Cui, D.S. 登録日 2017-03-23 公開日 2017-04-12 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 Asymmetric Anchoring Is Required for Efficient Omega-Loop Opening and Closing in Cytosolic Phosphoenolpyruvate Carboxykinase. Biochemistry, 56, 2017
6PB5	The E. coli class-II CAP-dependent transcription activation complex at the state 1 architecture 分子名称: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ... 著者 Liu, B, Shi, W. 登録日 2019-06-13 公開日 2020-03-18 最終更新日 2024-03-20 実験手法 ELECTRON MICROSCOPY (4.52 Å) 主引用文献 Visualization of two architectures in class-II CAP-dependent transcription activation Plos Biol., 18, 2020
5H35	Crystal structures of the TRIC trimeric intracellular cation channel orthologue from Sulfolobus solfataricus 分子名称: 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, Fab Heavy Chain, Fab Light Chain, ... 著者 Kasuya, G, Hiraizumi, M, Hattori, M, Nureki, O. 登録日 2016-10-20 公開日 2017-01-11 最終更新日 2024-11-13 実験手法 X-RAY DIFFRACTION (2.642 Å) 主引用文献 Crystal structures of the TRIC trimeric intracellular cation channel orthologues Cell Res., 26, 2016
5V95	Structure of the H477R variant of rat cytosolic PEPCK in complex with manganese. 分子名称: MANGANESE (II) ION, Phosphoenolpyruvate carboxykinase, cytosolic [GTP], ... 著者 Holyoak, T, Cui, D.S. 登録日 2017-03-23 公開日 2017-04-12 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Asymmetric Anchoring Is Required for Efficient Omega-Loop Opening and Closing in Cytosolic Phosphoenolpyruvate Carboxykinase. Biochemistry, 56, 2017

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