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9EM1
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Human pyridoxal phosphatase in complex with 7,8-dihydroxyflavone and phosphate
分子名称: 7,8-bis(oxidanyl)-2-phenyl-chromen-4-one, Chronophin, GLYCEROL, ...
著者Brenner, M, Gohla, A, Schindelin, H.
登録日2024-03-07
公開日2024-06-12
最終更新日2024-06-26
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献7,8-Dihydroxyflavone is a direct inhibitor of human and murine pyridoxal phosphatase.
Elife, 13, 2024
9B59
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BU of 9b59 by Molmil
Ubiquitin E2-Ub-E3 HECT tetrahedral transthiolation intermediate mimic - state 5
分子名称: 4-aminobutanenitrile, E3 ubiquitin-protein ligase pub2, Ubiquitin, ...
著者Kochanczyk, T, Lima, C.D.
登録日2024-03-22
公開日2024-06-05
最終更新日2024-09-18
実験手法ELECTRON MICROSCOPY (3.49 Å)
主引用文献Structural basis for transthiolation intermediates in the ubiquitin pathway.
Nature, 633, 2024
9B5A
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BU of 9b5a by Molmil
Ubiquitin E2-Ub-E3 HECT tetrahedral transthiolation intermediate mimic - state 6
分子名称: 4-aminobutanenitrile, E3 ubiquitin-protein ligase pub2, Ubiquitin, ...
著者Kochanczyk, T, Lima, C.D.
登録日2024-03-22
公開日2024-06-05
最終更新日2024-09-18
実験手法ELECTRON MICROSCOPY (3.65 Å)
主引用文献Structural basis for transthiolation intermediates in the ubiquitin pathway.
Nature, 633, 2024
9B5H
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BU of 9b5h by Molmil
Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (doubly Ub-loaded) - cluster 3 map and model (Ub(A)-AMP/PPi/Mg)
分子名称: 4-aminobutanenitrile, ADENOSINE MONOPHOSPHATE, Large ribosomal subunit protein eL40B, ...
著者Kochanczyk, T, Lima, C.D.
登録日2024-03-22
公開日2024-06-05
最終更新日2024-09-18
実験手法ELECTRON MICROSCOPY (2.69 Å)
主引用文献Structural basis for transthiolation intermediates in the ubiquitin pathway.
Nature, 633, 2024
9B5L
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BU of 9b5l by Molmil
Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (doubly Ub-loaded) - Ub(T) class 10 map and model from cluster 5 (Ub(A)-AMP)
分子名称: 4-aminobutanenitrile, ADENOSINE MONOPHOSPHATE, Polyubiquitin, ...
著者Kochanczyk, T, Lima, C.D.
登録日2024-03-22
公開日2024-06-05
最終更新日2024-09-18
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Structural basis for transthiolation intermediates in the ubiquitin pathway.
Nature, 633, 2024
9B5X
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BU of 9b5x by Molmil
Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (singly Ub-loaded) - Ub(T) class 10 map and model from cluster 5 (ATP/Mg)
分子名称: 4-aminobutanenitrile, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
著者Kochanczyk, T, Lima, C.D.
登録日2024-03-22
公開日2024-06-05
最終更新日2024-09-25
実験手法ELECTRON MICROSCOPY (4.16 Å)
主引用文献Structural basis for transthiolation intermediates in the ubiquitin pathway.
Nature, 633, 2024
9B5V
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BU of 9b5v by Molmil
Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (singly Ub-loaded) - Ub(T) class 10 map and model from cluster 1 (ATP/Mg)
分子名称: 4-aminobutanenitrile, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
著者Kochanczyk, T, Lima, C.D.
登録日2024-03-22
公開日2024-06-05
最終更新日2024-09-25
実験手法ELECTRON MICROSCOPY (3.94 Å)
主引用文献Structural basis for transthiolation intermediates in the ubiquitin pathway.
Nature, 633, 2024
9CBM
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BU of 9cbm by Molmil
Cryo-EM structure of dexmedetomidine-bound alpha-2A-adrenergic receptor in complex with heterotrimeric Gi-protein
分子名称: 4-[(1~{S})-1-(2,3-dimethylphenyl)ethyl]-1~{H}-imidazole, Endolysin,Alpha-2A adrenergic receptor, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, ...
著者Lou, J.S, Su, M, Wang, J, Do, H.N, Miao, Y, Huang, X.Y.
登録日2024-06-19
公開日2024-09-11
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献Distinct binding conformations of epinephrine with alpha- and beta-adrenergic receptors.
Exp.Mol.Med., 2024
9IKC
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Orf virus scaffolding protein Orfv075
分子名称: 62 kDa protein
著者Hyun, J, Kim, S, Ko, S, Kim, M, Jang, Y.
登録日2024-06-27
公開日2024-08-07
実験手法ELECTRON MICROSCOPY (1.9 Å)
主引用文献Cryo-EM structure of orf virus scaffolding protein orfv075.
Biochem.Biophys.Res.Commun., 728, 2024
9EX1
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BU of 9ex1 by Molmil
X-ray structure of a polyoxidovanadate/lysozyme adduct obtained when the protein is treated with [VIVO(acac)2] in 1.1 M NaCl, 0.1 M sodium acetate at pH 4.0 (Structure B)
分子名称: CHLORIDE ION, Lysozyme C, Polyoxidovanadate complex
著者Tito, G, Merlino, A, Ferraro, G.
登録日2024-04-05
公開日2024-06-26
最終更新日2024-07-31
実験手法X-RAY DIFFRACTION (1.785 Å)
主引用文献Non-Covalent and Covalent Binding of New Mixed-Valence Cage-like Polyoxidovanadate Clusters to Lysozyme.
Angew.Chem.Int.Ed.Engl., 63, 2024
9CBL
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BU of 9cbl by Molmil
Cryo-EM structure of epinephrine-bound alpha-2A-adrenergic receptor in complex with heterotrimeric Gi-protein
分子名称: Endolysin,Alpha-2A adrenergic receptor, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, ...
著者Lou, J.S, Su, M, Wang, J, Do, H.N, Miao, Y, Huang, X.Y.
登録日2024-06-19
公開日2024-09-11
実験手法ELECTRON MICROSCOPY (2.8 Å)
主引用文献Distinct binding conformations of epinephrine with alpha- and beta-adrenergic receptors.
Exp.Mol.Med., 2024
9ATC
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BU of 9atc by Molmil
ATCASE Y165F MUTANT
分子名称: ASPARTATE TRANSCARBAMOYLASE, ZINC ION
著者Ha, Y, Allewell, N.M.
登録日1998-06-26
公開日1999-07-26
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Intersubunit hydrogen bond acts as a global molecular switch in Escherichia coli aspartate transcarbamoylase.
Proteins, 33, 1998
9EX2
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BU of 9ex2 by Molmil
X-ray structure of a polyoxidovanadate/lysozyme adduct obtained when the protein is treated with [VIVO(acac)2] in 1.1 M NaCl, 0.1 M sodium acetate at pH 4.0 (Structure C)
分子名称: CHLORIDE ION, Lysozyme C, Polyoxidovanadate complex, ...
著者Tito, G, Merlino, A, Ferraro, G.
登録日2024-04-05
公開日2024-06-26
最終更新日2024-07-31
実験手法X-RAY DIFFRACTION (1.172 Å)
主引用文献Non-Covalent and Covalent Binding of New Mixed-Valence Cage-like Polyoxidovanadate Clusters to Lysozyme.
Angew.Chem.Int.Ed.Engl., 63, 2024
9EX0
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BU of 9ex0 by Molmil
X-ray structure of a polyoxidovanadate/lysozyme adduct obtained when the protein is treated with [VIVO(acac)2] in 1.1 M NaCl, 0.1 M sodium acetate at pH 4.0 (Structure A)
分子名称: CHLORIDE ION, Lysozyme C, Polyoxidovanadate complex, ...
著者Tito, G, Merlino, A, Ferraro, G.
登録日2024-04-05
公開日2024-06-26
最終更新日2024-07-31
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献Non-Covalent and Covalent Binding of New Mixed-Valence Cage-like Polyoxidovanadate Clusters to Lysozyme.
Angew.Chem.Int.Ed.Engl., 63, 2024
7T1M
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BU of 7t1m by Molmil
Crystal structure of a bacterial sterol transporter
分子名称: CHLORIDE ION, MCA1014
著者Dassama, L.M.K, Zhai, L.
登録日2021-12-02
公開日2022-12-14
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Novel sterol binding domains in bacteria.
Elife, 12, 2024
7T1S
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BU of 7t1s by Molmil
Crystal structure of a bacterial sterol transporter
分子名称: BstC, CITRIC ACID, DI(HYDROXYETHYL)ETHER
著者Dassama, L.M.K, Zhai, L.
登録日2021-12-02
公開日2022-12-14
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.91 Å)
主引用文献Novel sterol binding domains in bacteria.
Elife, 12, 2024
9AX6
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BU of 9ax6 by Molmil
Tricomplex of RMC-6236, KRAS G12D, and CypA
分子名称: (1R,2S)-N-[(1P,7S,9S,13R,20M)-21-ethyl-20-{2-[(1R)-1-methoxyethyl]-5-(4-methylpiperazin-1-yl)pyridin-3-yl}-17,17-dimethyl-8,14-dioxo-15-oxa-4-thia-9,21,27,28-tetraazapentacyclo[17.5.2.1~2,5~.1~9,13~.0~22,26~]octacosa-1(24),2,5(28),19,22,25-hexaen-7-yl]-2-methylcyclopropane-1-carboxamide, GTPase KRas, MAGNESIUM ION, ...
著者Tomlinson, A.C.A, Saldajeno-Concar, M, Knox, J.E, Yano, J.K.
登録日2024-03-05
公開日2024-04-17
最終更新日2024-06-12
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Translational and Therapeutic Evaluation of RAS-GTP Inhibition by RMC-6236 in RAS-Driven Cancers.
Cancer Discov, 14, 2024
9G7H
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BU of 9g7h by Molmil
Human Sirt6 in complex with ADP-ribose and the inhibitor 2-Pr
分子名称: 2,4-bis(oxidanylidene)-1-[2-oxidanylidene-2-[[(2S)-3-oxidanylidene-3-(propylamino)-2-[3-(3-pyridin-3-yl-1,2,4-oxadiazol-5-yl)propanoylamino]propyl]amino]ethyl]pyrimidine-5-carboxamide, NAD-dependent protein deacetylase sirtuin-6, SULFATE ION, ...
著者You, W, Steegborn, C.
登録日2024-07-21
公開日2024-08-14
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Elucidating the Unconventional Binding Mode of a DNA-Encoded Library Hit Provides a Blueprint for Sirtuin 6 Inhibitor Development.
Chemmedchem, 2024
9B34
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BU of 9b34 by Molmil
Structure of concanavalin A (ConA) dimer from the open-state structure of kainate receptor GluK2 in complex with agonist glutamate and positive allosteric modulator BPAM344 bound to two ConA dimers. Type I interface between GluK2 ligand-binding domain and ConA
分子名称: CALCIUM ION, Concanavalin A, ZINC ION
著者Nadezhdin, K.D, Gangwar, S.P, Sobolevsky, A.I.
登録日2024-03-18
公開日2024-05-22
最終更新日2024-06-26
実験手法ELECTRON MICROSCOPY (3.58 Å)
主引用文献Kainate receptor channel opening and gating mechanism.
Nature, 630, 2024
9B5G
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BU of 9b5g by Molmil
Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (doubly Ub-loaded) - cluster 2 map and model (Ub(A)/ATP/Mg)
分子名称: 4-aminobutanenitrile, ADENOSINE-5'-TRIPHOSPHATE, Large ribosomal subunit protein eL40B, ...
著者Kochanczyk, T, Lima, C.D.
登録日2024-03-22
公開日2024-06-05
最終更新日2024-09-18
実験手法ELECTRON MICROSCOPY (2.67 Å)
主引用文献Structural basis for transthiolation intermediates in the ubiquitin pathway.
Nature, 633, 2024
7TB9
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BU of 7tb9 by Molmil
Structural characterization of the biological synthetic peptide pCEMP1
分子名称: CEMP1-p1
著者Lopez Giraldo, A, del Rio Portilla, F, Nidome Campos, M, Romo Arevalo, E, Arzate, H.
登録日2021-12-21
公開日2023-01-18
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Solution NMR structure of cementum protein 1 derived peptide (CEMP1-p1) and its role in the mineralization process.
J.Pept.Sci., 29, 2023
3SY7
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BU of 3sy7 by Molmil
Improved crystal structure of Pseudomonas aeruginosa OprD
分子名称: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, Porin D
著者van den Berg, B, Eren, E.
登録日2011-07-15
公開日2012-02-08
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Substrate Specificity within a Family of Outer Membrane Carboxylate Channels.
Plos Biol., 10, 2012
7NVO
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BU of 7nvo by Molmil
Human TRiC complex in open state with nanobody bound
分子名称: ADENOSINE-5'-DIPHOSPHATE, ALUMINUM FLUORIDE, MAGNESIUM ION, ...
著者Kelly, J.J, Chi, G, Bulawa, C, Paavilainen, V.O, Bountra, C, Huiskonen, J.T, Yue, W.
登録日2021-03-15
公開日2022-03-02
最終更新日2024-07-10
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Snapshots of actin and tubulin folding inside the TRiC chaperonin.
Nat.Struct.Mol.Biol., 29, 2022
7NVN
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BU of 7nvn by Molmil
Human TRiC complex in closed state with nanobody and tubulin bound
分子名称: ADENOSINE-5'-DIPHOSPHATE, ALUMINUM FLUORIDE, MAGNESIUM ION, ...
著者Kelly, J.J, Chi, G, Bulawa, C, Paavilainen, V.O, Bountra, C, Huiskonen, J.T, Yue, W.
登録日2021-03-15
公開日2022-03-02
最終更新日2022-06-01
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献Snapshots of actin and tubulin folding inside the TRiC chaperonin.
Nat.Struct.Mol.Biol., 29, 2022
7NWR
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BU of 7nwr by Molmil
Structure of BT1526, a myo-inositol-1-phosphate synthase
分子名称: Inositol-3-phosphate synthase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, SODIUM ION
著者Basle, A, Tang, G, Marles-Wright, J, Campopiano, D.
登録日2021-03-17
公開日2022-03-30
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Characterization of inositol lipid metabolism in gut-associated Bacteroidetes.
Nat Microbiol, 7, 2022

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件を2024-09-25に公開中

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