PDB: 45953 件ウェブページステータス検索Chemie searchBIRD

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3GO3	Interactions of an echinomycin-DNA complex with manganese(II) ions 分子名称: 2-CARBOXYQUINOXALINE, 5'-D(*AP*CP*GP*TP*AP*CP*GP*T)-3', DI(HYDROXYETHYL)ETHER, ... 著者 Pfoh, R, Cuesta-Seijo, J.A, Sheldrick, G.M. 登録日 2009-03-18 公開日 2009-03-31 最終更新日 2012-12-12 実験手法 X-RAY DIFFRACTION (1.1 Å) 主引用文献 Interaction of an Echinomycin-DNA Complex with Manganese Ion Acta Crystallogr.,Sect.F, 65, 2009
8EFV	Structure of single homo-hexameric Holliday junction ATP-dependent DNA helicase RuvB motor 分子名称: 49-mer DNA, 51-mer DNA, ADENOSINE-5'-DIPHOSPHATE, ... 著者 Shen, Z.F, Rish, A.D, Fu, T.M. 登録日 2022-09-09 公開日 2023-05-10 最終更新日 2024-06-19 実験手法 ELECTRON MICROSCOPY (2.97 Å) 主引用文献 Structure of single homo-hexameric Holliday junction ATP-dependent DNA helicase RuvB motor To Be Published
7ZPP	Cryo-EM structure of the MVV CSC intasome at 4.5A resolution 分子名称: Integrase, vDNA, non-transferred strand, ... 著者 Ballandras-Colas, A, Maskell, D, Pye, V.E, Locke, J, Swuec, S, Kotecha, A, Costa, A, Cherepanov, P. 登録日 2022-04-28 公開日 2022-05-11 最終更新日 2024-07-24 実験手法 ELECTRON MICROSCOPY (4.5 Å) 主引用文献 A supramolecular assembly mediates lentiviral DNA integration Science, 355, 2017
1S1L	Influence of Groove Interactions on the Formation of DNA Holliday Junctions 分子名称: 5'-D(*CP*CP*(OIP)*GP*TP*AP*CP*(5CM)P*GP*G)-3' 著者 Hays, F.A, Jones, Z.J, Ho, P.S. 登録日 2004-01-06 公開日 2004-08-31 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Influence of minor groove substituents on the structure of DNA holliday junctions. Biochemistry, 43, 2004
7QFN	Human Topoisomerase II Beta ATPase ADP 分子名称: ADENOSINE-5'-DIPHOSPHATE, DNA topoisomerase 2-beta, MAGNESIUM ION, ... 著者 Ling, E.M, Basle, A, Cowell, I.G, Blower, T.R, Austin, C.A. 登録日 2021-12-06 公開日 2022-05-25 最終更新日 2024-06-19 実験手法 X-RAY DIFFRACTION (2.621 Å) 主引用文献 A comprehensive structural analysis of the ATPase domain of human DNA topoisomerase II beta bound to AMPPNP, ADP, and the bisdioxopiperazine, ICRF193. Structure, 30, 2022
7QFO	Human Topoisomerase II Beta ATPase AMPPNP 分子名称: ALANINE, DNA topoisomerase 2-beta, MAGNESIUM ION, ... 著者 Ling, E.M, Basle, A, Cowell, I.G, Blower, T.R, Austin, C.A. 登録日 2021-12-06 公開日 2022-05-25 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 A comprehensive structural analysis of the ATPase domain of human DNA topoisomerase II beta bound to AMPPNP, ADP, and the bisdioxopiperazine, ICRF193. Structure, 30, 2022
1JGR	Crystal Structure Analysis of the B-DNA Dodecamer CGCGAATTCGCG with Thallium Ions. 分子名称: 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3', MAGNESIUM ION, THALLIUM (I) ION 著者 Howerton, S.B, Sines, C.C, VanDerveer, D, Williams, L.D. 登録日 2001-06-26 公開日 2001-09-05 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (1.2 Å) 主引用文献 Locating monovalent cations in the grooves of B-DNA. Biochemistry, 40, 2001
2OK2	MutS C-terminal domain fused to Maltose Binding Protein 分子名称: Maltose-binding periplasmic protein, DNA mismatch repair protein mutS fusion protein, SULFATE ION, ... 著者 Putnam, C.D, Mendillo, M.L, Kolodner, R.D. 登録日 2007-01-15 公開日 2007-04-10 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Escherichia coli MutS Tetramerization Domain Structure Reveals That Stable Dimers but Not Tetramers Are Essential for DNA Mismatch Repair in Vivo. J.Biol.Chem., 282, 2007
7P2N	E.coli GyrB24 with inhibitor LSJ38 (EBL2684) 分子名称: 2-[[3,4-bis(chloranyl)-5-methyl-1H-pyrrol-2-yl]carbonylamino]-5-oxidanyl-1,3-benzothiazole-6-carboxylic acid, DNA gyrase subunit B, PHOSPHATE ION 著者 Stevenson, C.E.M, Lawson, D.M, Maxwell, A.M, Henderson, S.R, Kikelj, D, Zega, A, Zidar, N, Ilas, J, Tomasic, T, Masic, L.P. 登録日 2021-07-06 公開日 2022-07-20 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.16 Å) 主引用文献 Exploring the 5-Substituted 2-Aminobenzothiazole-Based DNA Gyrase B Inhibitors Active against ESKAPE Pathogens. Acs Omega, 8, 2023
1KA8	Crystal Structure of the Phage P4 Origin-Binding Domain 分子名称: putative P4-specific DNA primase 著者 Yeo, H.J, Ziegelin, G, Korolev, S, Calendar, R, Lanka, E, Waksman, G. 登録日 2001-10-31 公開日 2002-04-17 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.95 Å) 主引用文献 Phage P4 origin-binding domain structure reveals a mechanism for regulation of DNA-binding activity by homo- and heterodimerization of winged helix proteins. Mol.Microbiol., 43, 2002
3HWU	Crystal structure of Putative DNA-binding protein (YP_299413.1) from Ralstonia eutrophA JMP134 at 1.30 A resolution 分子名称: Putative DNA-binding protein 著者 Joint Center for Structural Genomics (JCSG) 登録日 2009-06-18 公開日 2009-06-30 最終更新日 2023-02-01 実験手法 X-RAY DIFFRACTION (1.3 Å) 主引用文献 Crystal structure of Putative DNA-binding protein (YP_299413.1) from Ralstonia eutropha JMP134 at 1.30 A resolution To be published
1NAB	The crystal structure of the complex between a disaccharide anthracycline and the DNA hexamer d(CGATCG) reveals two different binding sites involving two DNA duplexes 分子名称: 5'-D(*CP*GP*AP*TP*CP*G)-3', 7-[5-(4-AMINO-5-HYDROXY-6-METHYL-TETRAHYDRO-PYRAN-2-YLOXY)-4-HYDROXY-6-METHYL-TETRAHYDRO-PYRAN-2-YLOXY]-6,9,11-TRIHYDROXY-9-(2-HYDROXY-ACETYL)-7,8,9,10-TETRAHYDRO-NAPHTHACENE-5,12-DIONE 著者 Temperini, C, Messori, L, Orioli, P, Di Bugno, C, Animati, F, Ughetto, G. 登録日 2002-11-27 公開日 2003-02-25 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 The crystal structure of the complex between a disaccharide anthracycline and the DNA hexamer d(CGATCG) reveals two different binding sites involving two DNA duplexes Nucleic Acids Res., 31, 2003
1P20	Surprising Roles of Electrostatic Interactions in DNA-Ligand Complexes 分子名称: 5'-D(*CP*GP*AP*TP*CP*G)-3', DOXORUBICIN, THALLIUM (I) ION 著者 Howerton, S.B, Nagpal, A, Williams, L.D. 登録日 2003-04-14 公開日 2003-05-13 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (1.34 Å) 主引用文献 Surprising Roles of Electrostatic Interactions in DNA-Ligand Complexes Biopolymers, 69, 2003
4EVV	mouse MBD4 glycosylase domain in complex with a G:T mismatch 分子名称: 1,2-ETHANEDIOL, DNA (5'-D(*CP*CP*AP*TP*GP*TP*GP*CP*TP*GP*A)-3'), DNA (5'-D(*TP*CP*AP*GP*CP*GP*CP*AP*TP*GP*G)-3'), ... 著者 Hashimoto, H, Zhang, X, Cheng, X. 登録日 2012-04-26 公開日 2012-07-11 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.39 Å) 主引用文献 Excision of thymine and 5-hydroxymethyluracil by the MBD4 DNA glycosylase domain: structural basis and implications for active DNA demethylation. Nucleic Acids Res., 40, 2012
2AYD	Crystal Structure of the C-terminal WRKY domainof AtWRKY1, an SA-induced and partially NPR1-dependent transcription factor 分子名称: SUCCINIC ACID, WRKY transcription factor 1, ZINC ION 著者 Duan, M.R, Nan, J, Li, Y, Su, X.D. 登録日 2005-09-07 公開日 2006-10-31 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 DNA binding mechanism revealed by high resolution crystal structure of Arabidopsis thaliana WRKY1 protein. Nucleic Acids Res., 35, 2007
2MNX	Major groove orientation of the (2S)-N6-(2-hydroxy-3-buten-1-yl)-2'-deoxyadenosine DNA adduct induced by 1,2-epoxy-3-butene 分子名称: 5'-D(*CP*GP*GP*AP*CP*(6HB)P*AP*GP*AP*AP*G)-3', 5'-D(*CP*TP*TP*CP*TP*TP*GP*TP*CP*CP*G)-3' 著者 Kowal, E.A, Kotapati, S, Turo, M, Tretyakova, N, Stone, M.P. 登録日 2014-04-16 公開日 2014-10-08 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Major Groove Orientation of the (2S)-N(6)-(2-Hydroxy-3-buten-1-yl)-2'-deoxyadenosine DNA Adduct Induced by 1,2-Epoxy-3-butene. Chem.Res.Toxicol., 27, 2014
7Z3X	Crystal structure of FIR RRM1-2 Y115F mutant bound to FUSE ssDNA 分子名称: 1,2-ETHANEDIOL, DNA (5'-D(*TP*TP*T)-3'), DNA (5'-D(P*GP*TP*())-3'), ... 著者 Ni, X, Chaikuad, A, Knapp, S, Structural Genomics Consortium (SGC) 登録日 2022-03-02 公開日 2022-11-09 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.65 Å) 主引用文献 Crystal structure of FIR RRM1-2 Y115F mutant bound to FUSE ssDNA To Be Published
1PJG	RNA/DNA Hybrid Decamer of CAAAGAAAAG/CTTTTCTTTG 分子名称: 5'-D(*CP*TP*TP*TP*TP*CP*TP*TP*TP*G)-3', 5'-R(*CP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3', CALCIUM ION 著者 Kopka, M.L, Lavelle, L, Han, G.W, Ng, H.-L, Dickerson, R.E. 登録日 2003-06-02 公開日 2003-12-09 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (1.15 Å) 主引用文献 An unusual sugar conformation in the structure of an RNA/DNA decamer of the polypurine tract may affect recognition by RNase H. J.Mol.Biol., 334, 2003
6P66	The crystal structure of the XPB complex with Bax1 from Archaeoglobus fulgidus at 3.0 Angstrom resolution 分子名称: CHLORIDE ION, DNA endonuclease Bax1, DNA repair protein RAD25 著者 DuPrez, K.T, Fan, L, Hilario, E. 登録日 2019-06-03 公開日 2020-06-17 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Structural basis of the XPB-Bax1 complex as a dynamic helicase-nuclease machinery for DNA repair. Nucleic Acids Res., 48, 2020
1PJO	Crystal Structure of an RNA/DNA hybrid of HIV-1 PPT 分子名称: 5'-D(*CP*TP*TP*TP*TP*CP*TP*TP*TP*G)-3', 5'-R(*CP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3', MAGNESIUM ION 著者 Kopka, M.L, Lavelle, L, Han, G.W, Ng, H.-L, Dickerson, R.E. 登録日 2003-06-03 公開日 2003-12-09 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (1.1 Å) 主引用文献 An Unusual Sugar Conformation in the Structure of an RNA/DNA Decamer of the Polypurine Tract May Affect Recognition by RNase H J.Mol.Biol., 334, 2003
3I8D	The Pairing Geometry of the Hydrophobic Thymine Analog 2,4-Difluorotoluene in Duplex DNA as Analyzed by X-ray Crystallography 分子名称: 5'-D(*CP*GP*CP*GP*AP*AP*TP*(DFT)P*CP*GP*CP*G)-3', GLYCEROL, Ribonuclease H 著者 Egli, M, Pallan, P.S. 登録日 2009-07-09 公開日 2009-09-01 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (1.61 Å) 主引用文献 Pairing geometry of the hydrophobic thymine analogue 2,4-difluorotoluene in duplex DNA as analyzed by X-ray crystallography. J.Am.Chem.Soc., 131, 2009
3R86	Crystal structure of d(CCGGTACCGG)2 as B-DNA duplex grown with 5 mM CoCl2 分子名称: COBALT (II) ION, DNA (5'-D(*CP*CP*GP*GP*TP*AP*CP*CP*GP*G)-3') 著者 Venkadesh, S, Mandal, P.K, Gautham, N. 登録日 2011-03-23 公開日 2011-04-06 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Crystal structure of d(CCGGTACCGG)2 as B-DNA duplex To be Published
2VN2	Crystal structure of the N-terminal domain of DnaD protein from Geobacillus kaustophilus HTA426 分子名称: CHROMOSOME REPLICATION INITIATION PROTEIN, MAGNESIUM ION 著者 Huang, C.-Y, Chang, Y.-W, Chen, W.-T, Sun, Y.-J, Hsiao, C.-D. 登録日 2008-01-30 公開日 2008-08-12 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Crystal Structure of the N-Terminal Domain of Geobacillus Kaustophilus Hta426 Dnad Protein. Biochem.Biophys.Res.Commun., 375, 2008
3SLP	Crystal Structure of Lambda Exonuclease in Complex with a 12 BP Symmetric DNA Duplex 分子名称: 5'-D(*GP*CP*GP*AP*CP*TP*AP*GP*TP*CP*GP*C)-3', CALCIUM ION, CHLORIDE ION, ... 著者 Bell, C.E, Zhang, J. 登録日 2011-06-24 公開日 2011-07-20 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Crystal structures of {lambda} exonuclease in complex with DNA suggest an electrostatic ratchet mechanism for processivity. Proc.Natl.Acad.Sci.USA, 108, 2011
5CP6	Nucleosome Core Particle with Adducts from the Anticancer Compound, [(eta6-5,8,9,10-tetrahydroanthracene)Ru(ethylenediamine)Cl][PF6] 分子名称: (ethane6-5,8,9,10-tetrahydroanthracene)Ru(II)(ethylene-diamine)Cl, DNA (145-MER), Histone H2A, ... 著者 Ma, Z, Adhireksan, Z, Murray, B.S, Dyson, P.J, Davey, C.A. 登録日 2015-07-21 公開日 2016-06-01 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 An Organometallic Compound which Exhibits a DNA Topology-Dependent One-Stranded Intercalation Mode. Angew.Chem.Int.Ed.Engl., 55, 2016

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