PDB: 45953 件ウェブページステータス検索Chemie searchBIRD

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2VBO	Molecular basis of human XPC gene recognition and cleavage by engineered homing endonuclease heterodimers 分子名称: 5'-D(*TP*CP*TP*GP*CP*CP*TP*TP*TP*TP *TP*TP*GP*AP*AP*GP*GP*AP*TP*CP*CP*TP*AP*A)-3', 5'-D(*TP*TP*AP*GP*GP*AP*TP*CP*CP*TP *TP*CP*AP*AP*AP*AP*AP*AP*GP*GP*CP*AP*GP*A)-3', CALCIUM ION, ... 著者 Redondo, P, Prieto, J, Munoz, I.G, Alibes, A, Stricher, F, Serrano, L, Arnould, S, Perez, C, Cabaniols, J.P, Duchateau, P, Paques, F, Blanco, F.J, Montoya, G. 登録日 2007-09-14 公開日 2008-10-28 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Molecular Basis of Xeroderma Pigmentosum Group C DNA Recognition by Engineered Meganucleases Nature, 456, 2008
477D	CALCIUM FORM OF THE B-DNA DODECAMER GGCGAATTCGCG 分子名称: 5'-D(*GP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3', CALCIUM ION 著者 Minasov, G, Tereshko, V, Egli, M. 登録日 1999-06-25 公開日 1999-07-19 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Atomic-resolution crystal structures of B-DNA reveal specific influences of divalent metal ions on conformation and packing. J.Mol.Biol., 291, 1999
3I3M	Crystal Structure of AlkB in complex with Mn(II), 2-oxoglutarate and methylated trinucleotide T-meC-T 分子名称: 2-OXOGLUTARIC ACID, Alpha-ketoglutarate-dependent dioxygenase alkB, DNA (5'-D(P*TP*(ME6)P*T)-3'), ... 著者 Yu, B, Hunt, J.F. 登録日 2009-06-30 公開日 2009-08-25 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Enzymological and structural studies of the mechanism of promiscuous substrate recognition by the oxidative DNA repair enzyme AlkB. Proc.Natl.Acad.Sci.USA, 106, 2009
1KB1	SOLUTION STRUCTURE OF AN 11-MER DNA DUPLEX CONTAINING 6-THIOGUANINE OPPOSITE CYTOSINE 分子名称: 5'-D(*CP*GP*TP*AP*CP*(S6G)P*CP*AP*TP*GP*C)-3', 5'-D(*GP*CP*AP*TP*GP*CP*GP*TP*AP*CP*G)-3' 著者 Bohon, J, De Los Santos, C.R. 登録日 2001-11-05 公開日 2001-11-28 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Structural effect of the anticancer agent 6-thioguanine on duplex DNA. Nucleic Acids Res., 31, 2003
1HAP	COMPLEX OF HUMAN ALPHA-THROMBIN WITH A 15MER OLIGONUCLEOTIDE GGTTGGTGTGGTTGG (BASED ON X-RAY MODEL OF DNA) 分子名称: 5'-D(*GP*GP*TP*TP*GP*GP*TP*GP*TP*GP*GP*TP*TP*GP*G)-3', D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide, Thrombin heavy chain, ... 著者 Padmanabhan, K, Tulinsky, A. 登録日 1995-10-03 公開日 1996-04-03 最終更新日 2013-02-27 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 An ambiguous structure of a DNA 15-mer thrombin complex. Acta Crystallogr.,Sect.D, 52, 1996
1Q39	Crystal structure of the DNA repair enzyme endonuclease-VIII (Nei) from E. coli: The WT enzyme at 2.8 resolution. 分子名称: CALCIUM ION, Endonuclease VIII, ZINC ION 著者 Golan, G, Zharkov, D.O, Feinberg, H, Fernandes, A.S, Zaika, E.I, Kycia, J.H, Grollman, A.P, Shoham, G. 登録日 2003-07-29 公開日 2004-08-03 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Structure of the uncomplexed DNA repair enzyme endonuclease VIII indicates significant interdomain flexibility. Nucleic Acids Res., 33, 2005
1KBM	SOLUTION STRUCTURE OF AN 11-MER DNA DUPLEX CONTAINING 6-THIOGUANINE OPPOSITE THYMINE 分子名称: 5'-D(*CP*GP*TP*AP*CP*(S6G)P*CP*AP*TP*GP*C)-3', 5'-D(*GP*CP*AP*TP*GP*TP*GP*TP*AP*CP*G)-3' 著者 Bohon, J, De Los Santos, C.R. 登録日 2001-11-06 公開日 2001-11-28 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Structural effect of the anticancer agent 6-thioguanine on duplex DNA. Nucleic Acids Res., 31, 2003
476D	CALCIUM FORM OF B-DNA UNDECAMER GCGAATTCGCG 分子名称: 5'-D(*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3', CALCIUM ION 著者 Minasov, G, Tereshko, V, Egli, M. 登録日 1999-06-25 公開日 1999-07-19 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.3 Å) 主引用文献 Atomic-resolution crystal structures of B-DNA reveal specific influences of divalent metal ions on conformation and packing. J.Mol.Biol., 291, 1999
478D	CRYSTAL STRUCTURE OF THE B-DNA DODECAMER 5'-D(CGCGAA(TAF)TCGCG), WHERE TAF IS 2'-DEOXY-2'-FLUORO-ARABINO-FURANOSYL THYMINE 分子名称: 5'-D(*CP*GP*CP*GP*AP*AP*(TAF)P*TP*CP*GP*CP*G)-3', CALCIUM ION 著者 Minasov, G, Tereshko, V, Egli, M. 登録日 1999-06-26 公開日 1999-07-19 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Atomic-resolution crystal structures of B-DNA reveal specific influences of divalent metal ions on conformation and packing. J.Mol.Biol., 291, 1999
4DK9	Crystal Structure of MBD4 Catalytic Domain Bound to Abasic DNA 分子名称: 5'-D(*AP*AP*GP*AP*CP*GP*TP*GP*GP*AP*C)-3', 5'-D(*TP*GP*TP*CP*CP*AP*(3DR)P*GP*TP*CP*T)-3', Methyl-CpG-binding domain protein 4, ... 著者 Manvilla, B.A, Toth, E.A, Drohat, A.C. 登録日 2012-02-03 公開日 2012-04-25 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.76 Å) 主引用文献 Crystal Structure of Human Methyl-Binding Domain IV Glycosylase Bound to Abasic DNA. J.Mol.Biol., 420, 2012
1MM8	Crystal structure of Tn5 Transposase complexed with ME DNA 分子名称: MANGANESE (II) ION, ME DNA non-transferred strand, ME DNA transferred strand, ... 著者 Steiniger-White, M, Bhasin, A, Lovell, S, Rayment, I, Reznikoff, W.S. 登録日 2002-09-03 公開日 2002-12-13 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Evidence for "unseen" Transposase--DNA contacts J.Mol.Biol., 322, 2002
3TXS	Crystal Structure of phage 44RR small terminase gp16 分子名称: Terminase DNA packaging enzyme small subunit 著者 Sun, S, Xiang, Y, Rossmann, M.G. 登録日 2011-09-23 公開日 2011-12-28 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (1.81 Å) 主引用文献 Structure and function of the small terminase component of the DNA packaging machine in T4-like bacteriophages. Proc.Natl.Acad.Sci.USA, 109, 2012
1OYI	Solution structure of the Z-DNA binding domain of the vaccinia virus gene E3L 分子名称: double-stranded RNA-binding protein 著者 Kahmann, J.D, Wecking, D.A, Putter, V, Lowenhaupt, K, Kim, Y.-G, Schmieder, P, Oschkinat, H, Rich, A, Schade, M. 登録日 2003-04-04 公開日 2004-03-09 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 The solution structure of the N-terminal domain of E3L shows a tyrosine conformation that may explain its reduced affinity to Z-DNA in vitro. Proc.Natl.Acad.Sci.USA, 101, 2004
1R0A	Crystal structure of HIV-1 reverse transcriptase covalently tethered to DNA template-primer solved to 2.8 angstroms 分子名称: 5'-D(*A*TP*GP*CP*AP*TP*CP*GP*GP*CP*GP*CP*TP*CP*GP*AP*AP*CP*AP*GP*GP*GP*AP*CP*GP*GP*T)-3', 5'-D(*C*CP*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*AP*GP*CP*GP*CP*CP*GP*(2DA))-3', GLYCEROL, ... 著者 Tuske, S, Ding, J, Arnold, E. 登録日 2003-09-19 公開日 2004-08-03 最終更新日 2021-10-27 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Nonnucleoside inhibitor binding affects the interactions of the fingers subdomain of human immunodeficiency virus type 1 reverse transcriptase with DNA. J.Virol., 78, 2004
8R64	Cryo-EM structure of the FIGNL1 AAA hexamer bound to RAD51 分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, DNA repair protein RAD51 homolog 1, ... 著者 Carver, A, Yates, L.A, Zhang, X. 登録日 2023-11-20 公開日 2024-09-04 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Molecular basis of FIGNL1 in dissociating RAD51 from DNA and chromatin. Biorxiv, 2024
2MH6	Solution structure of DNA duplex containing N3T-ethylene-N1I interstrand cross-link 分子名称: 5'-D(*CP*AP*GP*TP*TP*CP*CP*A)-3', 5'-D(*TP*GP*GP*AP*IP*CP*TP*G)-3' 著者 Denisov, A.Y, O'Flaherty, D.K, Noronha, A.M, Wilds, C.J. 登録日 2013-11-18 公開日 2014-07-02 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 NMR Structure of an Ethylene Interstrand Cross-Linked DNA which Mimics the Lesion Formed by 1,3-Bis(2-chloroethyl)-1-nitrosourea. Chemmedchem, 9, 2014
4HQI	Structure of O6-Benzyl-2'-deoxyguanosine opposite perimidinone-derived synthetic nucleoside in DNA duplex 分子名称: SPERMINE, STRONTIUM ION, Short modified nucleic acids 著者 Kowal, E.A, Lad, R, Pallan, P.S, Muffly, E, Wawrzak, Z, Egli, M, Sturla, S.J, Stone, M.P. 登録日 2012-10-25 公開日 2013-07-10 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Recognition of O6-benzyl-2'-deoxyguanosine by a perimidinone-derived synthetic nucleoside: a DNA interstrand stacking interaction. Nucleic Acids Res., 41, 2013
2RV4	Solution structures of the DNA-binding domain (ZF5) of mouse immune-related zinc-finger protein ZFAT 分子名称: ZINC ION, Zinc finger protein ZFAT 著者 Tochio, N, Umehara, T, Kigawa, T, Yokoyama, S. 登録日 2015-01-26 公開日 2015-04-08 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Solution structures of the DNA-binding domains of immune-related zinc-finger protein ZFAT J.Struct.Funct.Genom., 16, 2015
1JB8	The Crystal Structure of an RNA/DNA Hybrid Reveals Novel Intermolecular Intercalation 分子名称: 5'-D(*CP*TP*TP*TP*TP*CP*TP*TP*TP*G)-3', 5'-R(*CP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3' 著者 Han, G.W, Kopka, M.L, Langs, D, Dickerson, R.E. 登録日 2001-06-02 公開日 2003-07-01 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.38 Å) 主引用文献 Crystal structure of an RNADNA hybrid reveals intermolecular intercalation: Dimer formation by base-pair swapping Proc.Natl.Acad.Sci.USA, 100, 2003
2RUW	Solution structures of the DNA-binding domain (ZF5) of immune-related zinc-finger protein ZFAT 分子名称: ZINC ION, Zinc finger protein ZFAT 著者 Tochio, N, Umehara, T, Kigawa, T, Yokoyama, S. 登録日 2015-01-26 公開日 2015-04-08 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Solution structures of the DNA-binding domains of immune-related zinc-finger protein ZFAT J.Struct.Funct.Genom., 16, 2015
3I2O	Crystal Structure of AlkB in complex with Fe(II), 2-oxoglutarate and methylated trinucleotide T-meA-T 分子名称: 2-OXOGLUTARIC ACID, Alpha-ketoglutarate-dependent dioxygenase alkB, DNA (5'-D(P*TP*(MA7)P*T)-3'), ... 著者 Yu, B, Hunt, J.F. 登録日 2009-06-29 公開日 2009-08-25 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Enzymological and structural studies of the mechanism of promiscuous substrate recognition by the oxidative DNA repair enzyme AlkB. Proc.Natl.Acad.Sci.USA, 106, 2009
3I49	Crystal Structure of AlkB in complex with Fe(II), 2-oxoglutarate and methylated trinucleotide T-meC-T 分子名称: 2-OXOGLUTARIC ACID, Alpha-ketoglutarate-dependent dioxygenase alkB, DNA (5'-D(P*TP*(ME6)P*T)-3'), ... 著者 Yu, B, Hunt, J.F. 登録日 2009-07-01 公開日 2009-08-25 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Enzymological and structural studies of the mechanism of promiscuous substrate recognition by the oxidative DNA repair enzyme AlkB. Proc.Natl.Acad.Sci.USA, 106, 2009
2RV7	Solution structures of the DNA-binding domains (ZF3-ZF4-ZF5) of immune-related zinc-finger protein ZFAT 分子名称: ZINC ION, Zinc finger protein ZFAT 著者 Tochio, N, Umehara, T, Kigawa, T, Yokoyama, S. 登録日 2015-01-26 公開日 2015-04-08 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Solution structures of the DNA-binding domains of immune-related zinc-finger protein ZFAT J.Struct.Funct.Genom., 16, 2015
7Q8A	Crystal structure of tandem domain RRM1-2 of FUBP-interacting repressor (FIR) bound to FUSE ssDNA fragment 分子名称: 1,2-ETHANEDIOL, DNA (5'-D(P*GP*T)-3'), Poly(U)-binding-splicing factor PUF60, ... 著者 Ni, X, Joerger, A.C, Chaikuad, A, Knapp, S, Structural Genomics Consortium (SGC) 登録日 2021-11-10 公開日 2022-11-09 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.05 Å) 主引用文献 Crystal structure of tandem domain RRM1-2 of FIR bound to FUSE ssDNA fragment To Be Published
1DDP	Solution structure of a CISPLATIN-INDUCED [CATAGCTATG]2 Interstrand cross-link 分子名称: Cisplatin, DNA (5'-D(*CP*AP*TP*AP*GP*CP*TP*AP*TP*G)-3') 著者 Zhu, L, Huang, H, Reid, B.R, Drobny, G.P, Hopkins, P.B. 登録日 1995-10-26 公開日 1996-03-08 最終更新日 2024-03-13 実験手法 SOLUTION NMR 主引用文献 Solution structure of a cisplatin-induced DNA interstrand cross-link. Science, 270, 1995

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