PDB: 45953 件ウェブページステータス検索Chemie searchBIRD

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5A9K	Structural basis for DNA strand separation by a hexameric replicative helicase 分子名称: MAGNESIUM ION, PHOSPHATE ION, REPLICATION PROTEIN E1 著者 Chaban, Y, Stead, J.A, Ryzhenkova, K, Whelan, F, Lamber, K, Antson, F, Sanders, C.M, Orlova, E.V. 登録日 2015-07-21 公開日 2015-08-26 最終更新日 2024-05-08 実験手法 ELECTRON MICROSCOPY (19 Å) 主引用文献 Structural Basis for DNA Strand Separation by a Hexameric Replicative Helicase. Nucleic Acids Res., 43, 2015
6IOB	The structure of the H109A mutant of UdgX in complex with uracil 分子名称: IRON/SULFUR CLUSTER, Phage SPO1 DNA polymerase-related protein, URACIL 著者 Xie, W, Tu, J. 登録日 2018-10-29 公開日 2019-07-24 最終更新日 2024-03-27 実験手法 X-RAY DIFFRACTION (2.002 Å) 主引用文献 Suicide inactivation of the uracil DNA glycosylase UdgX by covalent complex formation. Nat.Chem.Biol., 15, 2019
1D6D	SOLUTION DNA STRUCTURE CONTAINING (A-A)-T TRIADS INTERDIGITATED BETWEEN A-T BASE PAIRS AND GGGG TETRADS; NMR, 8 STRUCT. 分子名称: 5'-D(*AP*AP*GP*GP*TP*TP*TP*TP*AP*AP*GP*G)-3' 著者 Kuryavyi, V.V, Kettani, A, Wang, W, Jones, R, Patel, D.J. 登録日 1999-10-13 公開日 2000-01-17 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 A diamond-shaped zipper-like DNA architecture containing triads sandwiched between mismatches and tetrads. J.Mol.Biol., 295, 2000
2VAI	Solution structure of a B-DNA hairpin at high pressure 分子名称: 5'-D(*AP*GP*GP*AP*TP*CP*CP*TP*UP*TP *TP*GP*GP*AP*TP*CP*CP*T)-3' 著者 Williamson, M.P, Wilton, D.J, Ghosh, M, Chary, K.V.A, Akasaka, K. 登録日 2007-08-31 公開日 2007-09-11 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Structural change in a B-DNA helix with hydrostatic pressure. Nucleic Acids Res., 36, 2008
8ASC	Ku70/80 binds to the Ku-binding motif of PAXX 分子名称: DNA (5'-D(P*CP*GP*GP*AP*TP*CP*GP*AP*GP*GP*GP*CP*CP*CP*GP*AP*TP*AP*T)-3'), DNA (5'-D(P*GP*GP*GP*CP*CP*CP*TP*CP*GP*AP*TP*CP*CP*G)-3'), Protein PAXX, ... 著者 Seif El Dahan, M, Ropars, V, Charbonnier, J.B. 登録日 2022-08-19 公開日 2023-06-21 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.95 Å) 主引用文献 PAXX binding to the NHEJ machinery explains functional redundancy with XLF. Sci Adv, 9, 2023
1K61	MATALPHA2 HOMEODOMAIN BOUND TO DNA 分子名称: 5'-D(*(5IU)P*GP*CP*GP*TP*GP*TP*AP*AP*AP*TP*GP*AP*AP*TP*TP*AP*CP*AP*TP*G)-3', 5'-D(*AP*CP*AP*TP*GP*TP*AP*AP*TP*TP*CP*AP*TP*TP*TP*AP*CP*AP*CP*GP*C)-3', Mating-type protein alpha-2 著者 Aishima, J, Gitti, R.K, Noah, J.E, Gan, H.H, Schlick, T, Wolberger, C. 登録日 2001-10-14 公開日 2002-12-11 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 A Hoogsteen base pair embedded in undistorted B-DNA NUCLEIC ACIDS RES., 30, 2002
5WTN	Crystal Structure Analysis of primosome protein DnaB (resiues 1-300) from Geobacillus stearothermophilus 分子名称: Replication initiation and membrane attachment protein 著者 Li, Y.C, Hsiao, C.D. 登録日 2016-12-13 公開日 2017-08-23 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Structural analyses of the bacterial primosomal protein DnaB reveal that it is a tetramer and forms a complex with a primosomal re-initiation protein J. Biol. Chem., 292, 2017
6HPQ	Crystal structure of human Pif1 helicase in complex with AMP-PNP, brominated crystal form. 分子名称: ATP-dependent DNA helicase PIF1, BROMIDE ION, MAGNESIUM ION, ... 著者 Ledikov, V.M, Dehghani-Tafti, S, Bax, B, Sanders, C.M, Antson, A.A. 登録日 2018-09-21 公開日 2019-01-23 最終更新日 2024-05-15 実験手法 X-RAY DIFFRACTION (1.43 Å) 主引用文献 Structural and functional analysis of the nucleotide and DNA binding activities of the human PIF1 helicase. Nucleic Acids Res., 47, 2019
1GIP	THE NMR STRUCTURE OF DNA DODECAMER DETERMINED IN AQUEOUS DILUTE LIQUID CRYSTALLINE PHASE 分子名称: 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3' 著者 Clore, G.M, Kuszewski, J. 登録日 2001-02-20 公開日 2001-08-01 最終更新日 2023-12-27 実験手法 SOLUTION NMR 主引用文献 Improving the accuracy of NMR structures of DNA by means of a database potential of mean force describing base-base positional interactions. J.Am.Chem.Soc., 123, 2001
3KK1	HIV-1 reverse transcriptase-DNA complex with nuceotide inhibitor GS-9148-diphosphate bound in nucleotide site 分子名称: 5'-D(*A*TP*GP*GP*TP*GP*GP*GP*CP*GP*CP*CP*CP*GP*AP*AP*CP*AP*GP*GP*GP*AP*CP*TP*GP*TP*G)-3', 5'-D(*AP*CP*A*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*GP*CP*GP*CP*CP*(DOC))-3', MAGNESIUM ION, ... 著者 Lansdon, E.B. 登録日 2009-11-04 公開日 2010-03-23 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Visualizing the molecular interactions of a nucleotide analog, GS-9148, with HIV-1 reverse transcriptase-DNA complex. J.Mol.Biol., 397, 2010
3KK3	HIV-1 reverse transcriptase-DNA complex with GS-9148 terminated primer 分子名称: 5'-D(*AP*CP*AP*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*GP*CP*GP*CP*C*(URT))-3', 5'-D(*AP*TP*GP*GP*TP*TP*GP*GP*CP*GP*CP*CP*CP*GP*AP*AP*CP*AP*GP*GP*GP*AP*CP*TP*GP*TP*G)-3', MAGNESIUM ION, ... 著者 Lansdon, E.B. 登録日 2009-11-04 公開日 2010-03-23 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Visualizing the molecular interactions of a nucleotide analog, GS-9148, with HIV-1 reverse transcriptase-DNA complex. J.Mol.Biol., 397, 2010
3KK2	HIV-1 reverse transcriptase-DNA complex with dATP bound in the nucleotide binding site 分子名称: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, 5'-D(*A*TP*GP*GP*TP*GP*GP*GP*CP*GP*CP*CP*CP*GP*AP*AP*CP*AP*GP*GP*GP*AP*CP*TP*GP*TP*G)-3', 5'-D(*AP*CP*A*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*GP*CP*GP*CP*CP*(DOC))-3', ... 著者 Lansdon, E.B. 登録日 2009-11-04 公開日 2010-03-23 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Visualizing the molecular interactions of a nucleotide analog, GS-9148, with HIV-1 reverse transcriptase-DNA complex. J.Mol.Biol., 397, 2010
4AAG	Crystal structure of the mutant D75N I-CreI in complex with its wild- type target in presence of Ca at the active site (The four central bases, 2NN region, are composed by GTAC from 5' to 3') 分子名称: 5'-D(*TP*CP*AP*AP*AP*AP*CP*GP*TP*CP*GP*TP*AP*CP *GP*AP*CP*GP*TP*TP*TP*TP*GP*A)-3', CALCIUM ION, DNA ENDONUCLEASE I-CREI 著者 Molina, R, Redondo, P, Stella, S, Marenchino, M, D'Abramo, M, Gervasio, F, Epinat, J.C, Valton, J, Grizot, S, Duchateau, P, Prieto, J, Montoya, G. 登録日 2011-12-01 公開日 2012-05-02 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Non-Specific Protein-DNA Interactions Control I-Crei Target Binding and Cleavage. Nucleic Acids Res., 40, 2012
1M77	Near Atomic Resolution Crystal Structure of an A-DNA Decamer d(CCCGATCGGG): Cobalt Hexammine Interactions with A-DNA 分子名称: 5'-D(*CP*CP*CP*GP*AP*TP*CP*GP*GP*G)-3', COBALT HEXAMMINE(III) 著者 Ramakrishnan, B, Sekharudu, C, Pan, B.C, Sundaralingam, M. 登録日 2002-07-18 公開日 2003-01-07 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (1.25 Å) 主引用文献 Near-atomic resolution crystal structure of an A-DNA decamer d(CCCGATCGGG): cobalt hexammine interaction with A-DNA. Acta Crystallogr.,Sect.D, 59, 2003
1QMC	C-terminal DNA-binding domain of HIV-1 integrase, NMR, 42 structures 分子名称: HIV-1 INTEGRASE 著者 Eijkelenboom, A.P.A.M, Sprangers, R, Hard, K, Puras Lutzke, R.A, Plasterk, R.H.A, Boelens, R, Kaptein, R. 登録日 1999-09-27 公開日 1999-12-14 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Refined Solution Structure of the C-Terminal DNA-Binding Domain of Human Immunovirus-1 Integrase. Proteins: Struct.,Funct., Genet., 36, 1999
3LPV	X-ray crystal structure of duplex DNA containing a cisplatin 1,2-d(GpG) intrastrand cross-link 分子名称: 5'-D(*CP*CP*TP*CP*TP*GP*GP*TP*CP*TP*CP*C)-3', 5'-D(*GP*GP*AP*GP*AP*CP*CP*AP*GP*AP*GP*G)-3', Cisplatin, ... 著者 Todd, R.C, Lippard, S.J. 登録日 2010-02-06 公開日 2010-08-11 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (1.77 Å) 主引用文献 Structure of duplex DNA containing the cisplatin 1,2-{Pt(NH(3))(2)}(2+)-d(GpG) cross-link at 1.77A resolution. J.Inorg.Biochem., 104, 2010
8H3Z	Crystal structure of the effector-binding domain of the LysR-type trasncription factor NtcB from Anabaena PCC 7120 分子名称: IODIDE ION, NtcB 著者 Han, S.J, Jiang, Y.L, Zhou, C.Z. 登録日 2022-10-09 公開日 2023-10-04 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.35 Å) 主引用文献 DNA looping mediates cooperative transcription activation. Nat.Struct.Mol.Biol., 31, 2024
4KBD	DNA STRUCTURE OF A MUTATED KB SITE 分子名称: DNA (5'-D(*CP*CP*TP*GP*GP*AP*AP*AP*GP*TP*GP*AP*GP*CP*AP*G)-3'), DNA (5'-D(*CP*TP*GP*CP*TP*CP*AP*CP*TP*TP*TP*CP*CP*AP*GP*G)-3') 著者 Tisne, C, Hartmann, B, Delepierre, M. 登録日 1998-11-30 公開日 1999-10-14 最終更新日 2023-12-27 実験手法 SOLUTION NMR 主引用文献 NF-kappa B binding mechanism: a nuclear magnetic resonance and modeling study of a GGG --> CTC mutation. Biochemistry, 38, 1999
6IOC	The structure of the H109Q mutant of UdgX in complex with uracil 分子名称: IRON/SULFUR CLUSTER, Phage SPO1 DNA polymerase-related protein, URACIL 著者 Xie, W, Tu, J. 登録日 2018-10-29 公開日 2019-07-24 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (1.624 Å) 主引用文献 Suicide inactivation of the uracil DNA glycosylase UdgX by covalent complex formation. Nat.Chem.Biol., 15, 2019
6I4O	Dodecamer DNA containing the synthetic base pair P-Z 分子名称: (DCZ)(DG)(DA)(DT)(DP)(DT)(DA)(DZ)(DA)(DT)(DC)(DG3) 著者 Padroni, G, Reichenbach, L.F, Parkinson, J.A, Burley, G.A. 登録日 2018-11-10 公開日 2019-06-12 最終更新日 2024-07-03 実験手法 SOLUTION NMR 主引用文献 Sequence-Selective Minor Groove Recognition of a DNA Duplex Containing Synthetic Genetic Components. J.Am.Chem.Soc., 141, 2019
1IHV	SOLUTION STRUCTURE OF THE DNA BINDING DOMAIN OF HIV-1 INTEGRASE, NMR, MINIMIZED AVERAGE STRUCTURE 分子名称: HIV-1 INTEGRASE 著者 Clore, G.M, Lodi, P.J, Ernst, J.A, Gronenborn, A.M. 登録日 1995-05-12 公開日 1996-10-14 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Solution structure of the DNA binding domain of HIV-1 integrase. Biochemistry, 34, 1995
1BGU	CRYSTAL STRUCTURE OF THE DNA MODIFYING ENZYME BETA-GLUCOSYLTRANSFERASE IN THE PRESENCE AND ABSENCE OF THE SUBSTRATE URIDINE DIPHOSPHOGLUCOSE 分子名称: BETA-GLUCOSYLTRANSFERASE, URIDINE-5'-DIPHOSPHATE 著者 Vrielink, A, Rueger, W, Driessen, H.P.C, Freemont, P.S. 登録日 1994-06-09 公開日 1994-10-15 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Crystal structure of the DNA modifying enzyme beta-glucosyltransferase in the presence and absence of the substrate uridine diphosphoglucose. EMBO J., 13, 1994
2DPC	Crystal Structure of d(CGCGAATXCGCG) Where X is 5-(N-aminohexyl)carbamoyl-2'-O-methyluridine 分子名称: (6-AMINOHEXYL)CARBAMIC ACID, COBALT (II) ION, DNA (5'-D(*DCP*DGP*DCP*DGP*DAP*DAP*DTP*(OMU)P*DCP*DGP*DCP*DG)-3'), ... 著者 Juan, E.C.M, Kondo, J, Kurihara, T, Ito, T, Ueno, Y, Matsuda, A, Takenaka, A. 登録日 2006-05-08 公開日 2007-04-17 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.55 Å) 主引用文献 Crystal structures of DNA:DNA and DNA:RNA duplexes containing 5-(N-aminohexyl)carbamoyl-modified uracils reveal the basis for properties as antigene and antisense molecules Nucleic Acids Res., 35, 2007
2DP7	Crystal Structure of D(CGCGAATXCGCG) Where X is 5-(N-aminohexyl)carbamoyl-2'-deoxyuridine 分子名称: (6-AMINOHEXYL)CARBAMIC ACID, DNA (5'-D(*DCP*DGP*DCP*DGP*DAP*DAP*DTP*DUP*DCP*DGP*DCP*DG)-3'), MAGNESIUM ION, ... 著者 Juan, E.C.M, Kondo, J, Kurihara, T, Ito, T, Ueno, Y, Matsuda, A, Takenaka, A. 登録日 2006-05-08 公開日 2007-04-17 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.55 Å) 主引用文献 Crystal structures of DNA:DNA and DNA:RNA duplexes containing 5-(N-aminohexyl)carbamoyl-modified uracils reveal the basis for properties as antigene and antisense molecules Nucleic Acids Res., 35, 2007
1BGT	CRYSTAL STRUCTURE OF THE DNA MODIFYING ENZYME BETA-GLUCOSYLTRANSFERASE IN THE PRESENCE AND ABSENCE OF THE SUBSTRATE URIDINE DIPHOSPHOGLUCOSE 分子名称: BETA-GLUCOSYLTRANSFERASE 著者 Vrielink, A, Rueger, W, Driessen, H.P.C, Freemont, P.S. 登録日 1994-06-09 公開日 1994-09-30 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Crystal structure of the DNA modifying enzyme beta-glucosyltransferase in the presence and absence of the substrate uridine diphosphoglucose. EMBO J., 13, 1994

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