PDB: 47011 件ウェブページステータス検索Chemie searchBIRD

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5EW2	Human thrombin sandwiched between two DNA aptamers: HD22 and HD1-deltaT12 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide, HD1-deltaT12, ... 著者 Pica, A, Russo Krauss, I, Parente, V, Sica, F. 登録日 2015-11-20 公開日 2016-11-30 最終更新日 2024-10-16 実験手法 X-RAY DIFFRACTION (3.59 Å) 主引用文献 Through-bond effects in the ternary complexes of thrombin sandwiched by two DNA aptamers. Nucleic Acids Res., 45, 2017
4LHF	Crystal structure of a DNA binding protein from phage P2 分子名称: Regulatory protein cox 著者 Berntsson, R.P.-A, Odegrip, R, Sehlen, W, Skaar, K, Svensson, L.M, Massad, T, Haggard-Ljungquist, E, Stenmark, P. 登録日 2013-07-01 公開日 2014-03-05 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.401 Å) 主引用文献 Structural insight into DNA binding and oligomerization of the multifunctional Cox protein of bacteriophage P2. Nucleic Acids Res., 42, 2014
3E42	Q138F HincII bound to GTCGAC and Ca2+ (cocrystallized) 分子名称: 5'-D(*DGP*DCP*DCP*DGP*DGP*DTP*DCP*DGP*DAP*DCP*DCP*DGP*DGP*DC)-3', CALCIUM ION, SODIUM ION, ... 著者 Horton, N.C, Babic, A.C, Little, E.J, Manohar, V.M. 登録日 2008-08-08 公開日 2008-08-26 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.68 Å) 主引用文献 DNA distortion and specificity in a sequence-specific endonuclease. J.Mol.Biol., 383, 2008
3GP1	MutM encountering an intrahelical 8-oxoguanine (oxoG) lesion in EC3-V222P complex 分子名称: 5'-D(*AP*GP*GP*TP*AP*GP*AP*TP*CP*CP*GP*GP*AP*CP*GP*CP**C)-3', 5'-D(P*TP*GP*CP*GP*TP*CP*CP*(8OG)P*GP*AP*TP*CP*TP*AP*CP*C)-3', DNA glycosylase, ... 著者 Spong, M.C, Qi, Y, Verdine, G.L. 登録日 2009-03-20 公開日 2009-11-10 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.05 Å) 主引用文献 Encounter and extrusion of an intrahelical lesion by a DNA repair enzyme Nature, 462, 2009
3E40	Q138F HincII bound to GTTAAC and cocrystallized with 5 mM Ca2+ 分子名称: 5'-D(*DGP*DCP*DCP*DGP*DGP*DTP*DP*DAP*DAP*DCP*DCP*DGP*DGP*DC)-3'), CALCIUM ION, SODIUM ION, ... 著者 Horton, N.C, Babic, A.C, Little, E.J, Manohar, V.M. 登録日 2008-08-08 公開日 2008-08-26 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 DNA distortion and specificity in a sequence-specific endonuclease. J.Mol.Biol., 383, 2008
305D	SIDE-BY-SIDE BINDING OF DISTAMYCIN MOLECULES TO D(ICATATIC) IN THE TETRAGONAL FORM 分子名称: DISTAMYCIN A, DNA (5'-D(*IP*CP*AP*TP*AP*TP*IP*C)-3'), MAGNESIUM ION 著者 Chen, X, Ramakrishnan, B, Sundaralingam, M. 登録日 1997-01-03 公開日 1997-09-22 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.17 Å) 主引用文献 Crystal structures of the side-by-side binding of distamycin to AT-containing DNA octamers d(ICITACIC) and d(ICATATIC). J.Mol.Biol., 267, 1997
3E3Y	Q138F HincII bound to GTTAAC and cocrystallized with 5 mM Ca2+ 分子名称: 5'-D(*DGP*DCP*DCP*DGP*DGP*DTP*DTP*DAP*DAP*DCP*DCP*DGP*DGP*DC)-3', CALCIUM ION, SODIUM ION, ... 著者 Horton, N.C, Babic, A.C, Little, E.J, Manohar, V.M. 登録日 2008-08-08 公開日 2008-08-26 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.13 Å) 主引用文献 DNA distortion and specificity in a sequence-specific endonuclease. J.Mol.Biol., 383, 2008
3E43	Q138F HincII bound to GTTAAC and cocrystallized with 2.5 mM MgCl2 分子名称: 5'-D(*DGP*DCP*DCP*DGP*DGP*DTP*DTP*DAP*DAP*DCP*DCP*DGP*DGP*DC)-3', Type-2 restriction enzyme HindII, UNKNOWN ATOM OR ION 著者 Horton, N.C, Babic, A.C, Little, E.J, Manohar, V.M. 登録日 2008-08-08 公開日 2008-08-26 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.73 Å) 主引用文献 DNA distortion and specificity in a sequence-specific endonuclease. J.Mol.Biol., 383, 2008
306D	SIDE-BY-SIDE BINDING OF DISTAMYCIN MOLECULES TO D(ICITACIC) 分子名称: DISTAMYCIN A, DNA (5'-D(*IP*CP*IP*TP*AP*CP*IP*C)-3'), MAGNESIUM ION 著者 Chen, X, Ramakrishnan, B, Sundaralingam, M. 登録日 1997-01-03 公開日 1997-09-22 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Crystal structures of the side-by-side binding of distamycin to AT-containing DNA octamers d(ICITACIC) and d(ICATATIC). J.Mol.Biol., 267, 1997
1Q3B	Crystal structure of the DNA repair enzyme endonuclease-VIII (Nei) from E. coli: The R252A mutant at 2.05 resolution. 分子名称: Endonuclease VIII, GLYCEROL, MAGNESIUM ION, ... 著者 Golan, G, Zharkov, D.O, Feinberg, H, Fernandes, A.S, Zaika, E.I, Kycia, J.H, Grollman, A.P, Shoham, G. 登録日 2003-07-29 公開日 2004-08-03 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (2.05 Å) 主引用文献 Structure of the uncomplexed DNA repair enzyme endonuclease VIII indicates significant interdomain flexibility. Nucleic Acids Res., 33, 2005
2M00	Solution structure of staphylococcal nuclease E43S mutant in the presence of ssDNA and Cd2+ 分子名称: Thermonuclease 著者 Xie, T, Feng, Y, Shan, L, Wang, J. 登録日 2012-10-14 公開日 2013-03-06 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Modeling of the [E43S]SNase-ssDNA-Cd(2+) complex: Structural insight into the action of nuclease on ssDNA. Arch.Biochem.Biophys., 532, 2013
2ICZ	NMR Structures of the Expanded DNA 10bp xTGxTAxCxGCxAxGT:xACTxGCGxTAxCA 分子名称: 5'-D(*(XAE)P*CP*TP*(XGA)P*CP*GP*(XTY)P*AP*(XCS)P*A)-3', 5'-D(*(XTY)P*GP*(XTY)P*AP*(XCS)P*(XGA)P*CP*(XAE)P*(XGA)P*T)-3' 著者 Lynch, S.R. 登録日 2006-09-13 公開日 2006-11-21 最終更新日 2024-05-29 実験手法 SOLUTION NMR 主引用文献 Toward a Designed, Functioning Genetic System with Expanded-Size Base Pairs: Solution Structure of the Eight-Base xDNA Double Helix. J.Am.Chem.Soc., 128, 2006
1ZF9	GGG Duplex A-DNA 分子名称: 5'-D(*CP*CP*CP*CP*CP*GP*GP*GP*GP*G)-3', SODIUM ION 著者 Hays, F.A, Teegarden, A.T, Jones, Z.J.R, Harms, M, Raup, D, Watson, J, Cavaliere, E, Ho, P.S. 登録日 2005-04-20 公開日 2005-05-10 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (1.38 Å) 主引用文献 How sequence defines structure: a crystallographic map of DNA structure and conformation. Proc.Natl.Acad.Sci.Usa, 102, 2005
6BLW	Zinc finger Domain of WT1(+KTS form) with M342R Mutation and 17+1mer Oligonucleotide with Triplet GGT 分子名称: 1,2-ETHANEDIOL, DNA (5'-D(*TP*AP*AP*CP*CP*CP*TP*CP*CP*CP*AP*TP*TP*TP*CP*GP*C)-3'), DNA (5'-D(P*GP*CP*GP*AP*AP*AP*TP*GP*GP*GP*AP*GP*GP*GP*TP*T)-3'), ... 著者 Horton, J.R, Cheng, X. 登録日 2017-11-11 公開日 2018-01-03 最終更新日 2024-10-09 実験手法 X-RAY DIFFRACTION (1.835 Å) 主引用文献 Role for first zinc finger of WT1 in DNA sequence specificity: Denys-Drash syndrome-associated WT1 mutant in ZF1 enhances affinity for a subset of WT1 binding sites. Nucleic Acids Res., 46, 2018
1P3O	Crystallographic Studies of Nucleosome Core Particles containing Histone 'Sin' Mutants 分子名称: Histone H2A, Histone H2B, Histone H3, ... 著者 Muthurajan, U.M, Bao, Y, Forsberg, L.J, Edayathumangalam, R.S, Dyer, P.N, White, C.L, Luger, K. 登録日 2003-04-17 公開日 2004-02-24 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (2.75 Å) 主引用文献 Crystal structures of histone Sin mutant nucleosomes reveal altered protein-DNA interactions EMBO J., 23, 2004
7ZPP	Cryo-EM structure of the MVV CSC intasome at 4.5A resolution 分子名称: Integrase, vDNA, non-transferred strand, ... 著者 Ballandras-Colas, A, Maskell, D, Pye, V.E, Locke, J, Swuec, S, Kotecha, A, Costa, A, Cherepanov, P. 登録日 2022-04-28 公開日 2022-05-11 最終更新日 2024-07-24 実験手法 ELECTRON MICROSCOPY (4.5 Å) 主引用文献 A supramolecular assembly mediates lentiviral DNA integration Science, 355, 2017
6G01	Complex of neuraminidase from H1N1 influenza virus with tamiphosphor monomethyl ester 分子名称: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... 著者 Pachl, P, Pokorna, J. 登録日 2018-03-15 公開日 2019-01-23 最終更新日 2024-10-23 実験手法 X-RAY DIFFRACTION (1.61 Å) 主引用文献 DNA-linked inhibitor antibody assay (DIANA) as a new method for screening influenza neuraminidase inhibitors. Biochem. J., 475, 2018
2WTU	Crystal structure of Escherichia coli MutS in complex with a 16 basepair oligo containing an A.A mismatch. 分子名称: ADENOSINE-5'-DIPHOSPHATE, CHLORIDE ION, DNA, ... 著者 Natrajan, G, Lebbink, J.H, Reumer, A, Fish, A, Winterwerp, H.H, Sixma, T.K. 登録日 2009-09-22 公開日 2010-02-09 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (3.4 Å) 主引用文献 Magnesium coordination controls the molecular switch function of DNA mismatch repair protein MutS. J. Biol. Chem., 285, 2010
2M87	Structural Basis of DNA Recognition by the Effector Domain of Klebsiella pneumoniae PmrA 分子名称: Transcriptional regulatory protein basR/pmrA 著者 Wang, I, Lou, Y.C, Chen, C. 登録日 2013-05-07 公開日 2014-01-22 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Solution structure and tandem DNA recognition of the C-terminal effector domain of PmrA from Klebsiella pneumoniae. Nucleic Acids Res., 42, 2014
6VAD	Fanconi Anemia ID complex 分子名称: Fanconi anemia group D2 protein, Fanconi anemia, complementation group I 著者 Pavletich, N.P. 登録日 2019-12-17 公開日 2020-03-18 最終更新日 2024-03-06 実験手法 ELECTRON MICROSCOPY (3.3 Å) 主引用文献 DNA clamp function of the monoubiquitinated Fanconi anaemia ID complex. Nature, 580, 2020
3S57	ABH2 cross-linked with undamaged dsDNA-1 containing cofactors 分子名称: 2-OXOGLUTARIC ACID, 5'-D(*CP*TP*GP*TP*CP*AP*TP*CP*AP*CP*TP*GP*CP*G)-3', 5'-D(*TP*CP*GP*CP*AP*GP*TP*GP*AP*TP*GP*AP*CP*A)-3', ... 著者 Yi, C, Chen, B, Qi, B, Ramirez, B, Zhang, W, Jia, G, Zhang, L, Li, C.Q, Dinner, A.R, Yang, C.-G, He, C. 登録日 2011-05-20 公開日 2012-06-06 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Duplex interrogation by a direct DNA repair protein in search of base damage Nat.Struct.Mol.Biol., 19, 2012
4DK9	Crystal Structure of MBD4 Catalytic Domain Bound to Abasic DNA 分子名称: 5'-D(*AP*AP*GP*AP*CP*GP*TP*GP*GP*AP*C)-3', 5'-D(*TP*GP*TP*CP*CP*AP*(3DR)P*GP*TP*CP*T)-3', Methyl-CpG-binding domain protein 4, ... 著者 Manvilla, B.A, Toth, E.A, Drohat, A.C. 登録日 2012-02-03 公開日 2012-04-25 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.76 Å) 主引用文献 Crystal Structure of Human Methyl-Binding Domain IV Glycosylase Bound to Abasic DNA. J.Mol.Biol., 420, 2012
6G02	Complex of neuraminidase from H1N1 influenza virus with tamiphosphor omega-azidohexyl ester 分子名称: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, 6-[[(3~{R},4~{R},5~{S})-4-acetamido-5-azanyl-3-pentan-3-yloxy-cyclohexen-1-yl]-oxidanyl-phosphoryl]oxyhexylimino-azanylidene-azanium, ... 著者 Pachl, P, Pokorna, J. 登録日 2018-03-15 公開日 2019-01-23 最終更新日 2020-07-29 実験手法 X-RAY DIFFRACTION (1.84 Å) 主引用文献 DNA-linked inhibitor antibody assay (DIANA) as a new method for screening influenza neuraminidase inhibitors. Biochem. J., 475, 2018
1Q39	Crystal structure of the DNA repair enzyme endonuclease-VIII (Nei) from E. coli: The WT enzyme at 2.8 resolution. 分子名称: CALCIUM ION, Endonuclease VIII, ZINC ION 著者 Golan, G, Zharkov, D.O, Feinberg, H, Fernandes, A.S, Zaika, E.I, Kycia, J.H, Grollman, A.P, Shoham, G. 登録日 2003-07-29 公開日 2004-08-03 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Structure of the uncomplexed DNA repair enzyme endonuclease VIII indicates significant interdomain flexibility. Nucleic Acids Res., 33, 2005
5HD9	Crystal Structure of the N-terminal domain of the DNA packaging ATPase from bacteriophage phi29 分子名称: Encapsidation protein 著者 Morais, M.C, Mao, H, Reyes-Aldrete, E. 登録日 2016-01-05 公開日 2016-03-09 最終更新日 2024-10-16 実験手法 X-RAY DIFFRACTION (1.941 Å) 主引用文献 Structural and Molecular Basis for Coordination in a Viral DNA Packaging Motor. Cell Rep, 14, 2016

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