PDB: 5653 件ウェブページステータス検索Chemie searchBIRD

---

4IH5	Hepatitis C Virus polymerase NS5B (BK) with fragment-based compounds 分子名称: 4-(2-phenylhydrazinyl)-1H-pyrazolo[3,4-d]pyrimidine, RNA-directed RNA polymerase 著者 Harris, S.F, Ghate, M. 登録日 2012-12-18 公開日 2013-07-03 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 De novo fragment design: a medicinal chemistry approach to fragment-based lead generation. J.Med.Chem., 56, 2013
6FC9	The 1,8-bis(aminomethyl)anthracene and Quadruplex-duplex junction complex 分子名称: DNA (27-MER), [8-(azaniumylmethyl)anthracen-1-yl]methylazanium 著者 Santana, A, Serrano, I, Montalvillo-Jimenez, L, Corzana, F, Bastida, A, Jimenez-Barbero, J, Gonzalez, C, Asensio, J.L. 登録日 2017-12-20 公開日 2019-04-10 最終更新日 2024-06-19 実験手法 SOLUTION NMR 主引用文献 De Novo Design of Selective Quadruplex-Duplex Junction Ligands and Structural Characterisation of Their Binding Mode: Targeting the G4 Hot-Spot. Chemistry, 2020
4IH6	Hepatitis C Virus polymerase NS5B (BK) with fragment-based compounds 分子名称: (5S)-3-(4-tert-butylbenzyl)-5-(propan-2-yl)imidazolidine-2,4-dione, RNA-directed RNA polymerase 著者 Harris, S.F, Wong, A. 登録日 2012-12-18 公開日 2013-07-03 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 De novo fragment design: a medicinal chemistry approach to fragment-based lead generation. J.Med.Chem., 56, 2013
4IH7	Hepatitis C Virus polymerase NS5B (BK) with fragment-based compounds 分子名称: 3-(3-tert-butylphenyl)pyridin-2(1H)-one, RNA-directed RNA polymerase, ZINC ION 著者 Harris, S.F, Wong, A. 登録日 2012-12-18 公開日 2013-07-03 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 De novo fragment design: a medicinal chemistry approach to fragment-based lead generation. J.Med.Chem., 56, 2013
5TGY	NMR structure of holo-PS1 分子名称: PS1, [5,10,15,20-tetrakis(trifluoromethyl)porphyrinato(2-)-kappa~4~N~21~,N~22~,N~23~,N~24~]zinc 著者 Polizzi, N.F, Wu, Y. 登録日 2016-09-28 公開日 2017-08-09 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 De novo design of a hyperstable non-natural protein-ligand complex with sub- angstrom accuracy. Nat Chem, 9, 2017
5TGW	NMR structure of apo-PS1 分子名称: PS1 著者 Polizzi, N.F, Wu, Y. 登録日 2016-09-28 公開日 2017-08-09 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 De novo design of a hyperstable non-natural protein-ligand complex with sub- angstrom accuracy. Nat Chem, 9, 2017
5L31	Crystal structure of an engineered metal-free RIDC1 variant containing five disulfide bonds. 分子名称: HEME C, SODIUM ION, Soluble cytochrome b562 著者 Tezcan, F.A, Churchfield, L.A. 登録日 2016-08-02 公開日 2016-11-09 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 De Novo Design of an Allosteric Metalloprotein Assembly with Strained Disulfide Bonds. J.Am.Chem.Soc., 138, 2016
5KP9	Structure of Nanoparticle Released from Enveloped Protein Nanoparticle 分子名称: EPN-01* 著者 Votteler, J, Ogohara, C, Yi, S, Hsia, Y, Natterman, U, Belnap, D.M, King, N.P, Sundquist, W.I. 登録日 2016-07-02 公開日 2016-12-07 最終更新日 2019-12-11 実験手法 ELECTRON MICROSCOPY (5.7 Å) 主引用文献 Designed proteins induce the formation of nanocage-containing extracellular vesicles. Nature, 540, 2016
5L32	Crystal structure of the Zn-RIDC1 complex bearing six interfacial disulfide bonds 分子名称: HEME C, HEXAETHYLENE GLYCOL, Soluble cytochrome b562, ... 著者 Churchfield, L.A, Tezcan, F.A. 登録日 2016-08-02 公開日 2016-11-09 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 De Novo Design of an Allosteric Metalloprotein Assembly with Strained Disulfide Bonds. J.Am.Chem.Soc., 138, 2016
7COQ	Hexameric Ring Complex of Engineered V1-ATPase bound to AMP-PNP: A3(De)3_(ANP)1cat 分子名称: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, V-type sodium ATPase catalytic subunit A, ... 著者 Kosugi, T, Tanabe, M, Koga, N. 登録日 2020-08-05 公開日 2021-08-11 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (3.44 Å) 主引用文献 De Novo Design of Allosteric Control into Rotary Motor V1-ATPase by Restoring Lost Function To Be Published
6XS7	Crystal structure of human Vps29 complexed with RaPID-derived cyclic peptide RT-D2 分子名称: 48V-DTY-THR-THR-ILE-TYR-TRP-THR-PRO-LEU-GLY-THR-PHE-PRO-ARG-ILE-ARG, FORMIC ACID, GLYCEROL, ... 著者 Chen, K.-E, Guo, Q, Collins, B.M. 登録日 2020-07-15 公開日 2021-07-14 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (1.58 Å) 主引用文献 De novo macrocyclic peptides for inhibiting, stabilizing, and probing the function of the retromer endosomal trafficking complex. Sci Adv, 7, 2021
6XSA	Crystal structure of human Vps29 complexed with RaPID-derived cyclic peptide RT-L2 分子名称: 48V-TYR-LEU-PRO-THR-ILE-THR-GLY-VAL-GLY-HIS-LEU-TRP-HIS-PRO-LEU, SULFATE ION, Vacuolar protein sorting-associated protein 29 著者 Chen, K.-E, Guo, Q, Collins, B.M. 登録日 2020-07-15 公開日 2021-07-14 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (1.83 Å) 主引用文献 De novo macrocyclic peptides for inhibiting, stabilizing, and probing the function of the retromer endosomal trafficking complex. Sci Adv, 7, 2021
6XS5	Crystal structure of human Vps29 complexed with RaPID-derived cyclic peptide RT-D1 分子名称: 48V-DTY-ILE-ILE-ASP-THR-PRO-LEU-GLY-VAL-PHE-LEU-SER-SER-LEU-LYS-ARG, FORMIC ACID, GLYCEROL, ... 著者 Chen, K.-E, Guo, Q, Collins, B.M. 登録日 2020-07-15 公開日 2021-07-14 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.01 Å) 主引用文献 De novo macrocyclic peptides for inhibiting, stabilizing, and probing the function of the retromer endosomal trafficking complex. Sci Adv, 7, 2021
6XS8	Crystal structure of Chaetomium thermophilum Vps29 complexed with RaPID-derived cyclic peptide RT-D3 分子名称: 48V-DTY-GLY-TYR-ASP-PRO-LEU-GLY-LEU-LYS-TYR-PHE-ALA, Vacuolar protein sorting-associated protein 29 著者 Chen, K.-E, Guo, Q, Collins, B.M. 登録日 2020-07-15 公開日 2021-07-14 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (1.95009851 Å) 主引用文献 De novo macrocyclic peptides for inhibiting, stabilizing, and probing the function of the retromer endosomal trafficking complex. Sci Adv, 7, 2021
6XS9	Crystal structure of human Vps29 complexed with RaPID-derived cyclic peptide RT-L1 分子名称: 1,4,7,10,13,16-HEXAOXACYCLOOCTADECANE, 48V-TYR-ILE-LYS-THR-PRO-LEU-GLY-THR-PHE-PRO-ASN-ARG-HIS-GLY, GLYCEROL, ... 著者 Chen, K.-E, Guo, Q, Collins, B.M. 登録日 2020-07-15 公開日 2021-07-21 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.69 Å) 主引用文献 De novo macrocyclic peptides for inhibiting, stabilizing, and probing the function of the retromer endosomal trafficking complex. Sci Adv, 7, 2021
2MUZ	ssNMR structure of a designed rocker protein 分子名称: designed rocker protein 著者 Wang, T, Joh, N, Wu, Y, DeGrado, W.F, Hong, M. 登録日 2014-09-18 公開日 2014-12-24 最終更新日 2015-01-14 実験手法 SOLUTION NMR 主引用文献 De novo design of a transmembrane Zn2+-transporting four-helix bundle. Science, 346, 2014
1PSV	COMPUTATIONALLY DESIGNED PEPTIDE WITH A BETA-BETA-ALPHA FOLD SELECTION, NMR, 32 STRUCTURES 分子名称: PDA8D 著者 Dahiyat, B.I, Sarisky, C.A, Mayo, S.L. 登録日 1997-10-29 公開日 1998-01-28 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 De novo protein design: towards fully automated sequence selection. J.Mol.Biol., 273, 1997
1Q7O	Determination of f-MLF-OH Peptide Structure with solid-state magic-angle spinning NMR Spectroscopy 分子名称: chemotactic peptide 著者 Rienstra, C.M, Tucker-Kellogg, L, Jaroniec, C.P, Hohwy, M, Reif, B, McMahon, M.T, Tidor, B, Lozano-Perez, T, Griffin, R.G. 登録日 2003-08-19 公開日 2003-09-09 最終更新日 2022-03-02 実験手法 SOLID-STATE NMR 主引用文献 De novo determination of peptide structure with solid-state magic-angle spinning NMR Spectroscopy Proc.Natl.Acad.Sci.USA, 99, 2002
1FFQ	CRYSTAL STRUCTURE OF CHITINASE A COMPLEXED WITH ALLOSAMIDIN 分子名称: 2-acetamido-2-deoxy-beta-D-allopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-allopyranose, ALLOSAMIZOLINE, CHITINASE A 著者 Papanikolau, Y, Tavlas, G, Vorgias, C.E, Petratos, K. 登録日 2000-07-26 公開日 2003-02-11 最終更新日 2023-08-09 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 De novo purification scheme and crystallization conditions yield high-resolution structures of chitinase A and its complex with the inhibitor allosamidin. Acta Crystallogr.,Sect.D, 59, 2003
1FSV	FULL SEQUENCE DESIGN 1 (FSD-1) OF BETA BETA ALPHA MOTIF, NMR, MINIMIZED AVERAGE STRUCTURE 分子名称: FULL SEQUENCE DESIGN 1 OF BETA BETA ALPHA MOTIF 著者 Dahiyat, B.I, Mayo, S.L. 登録日 1997-10-26 公開日 1998-01-28 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 De novo protein design: fully automated sequence selection. Science, 278, 1997
1FSD	FULL SEQUENCE DESIGN 1 (FSD-1) OF BETA BETA ALPHA MOTIF, NMR, 41 STRUCTURES 分子名称: FULL SEQUENCE DESIGN 1 OF BETA BETA ALPHA MOTIF 著者 Dahiyat, B.I, Mayo, S.L. 登録日 1997-06-09 公開日 1997-11-12 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 De novo protein design: fully automated sequence selection. Science, 278, 1997
8TO0	48-nm repeating structure of doublets from mouse sperm flagella 分子名称: Cilia- and flagella- associated protein 210, Cilia- and flagella-associated protein 107, Cilia- and flagella-associated protein 141, ... 著者 Chen, Z, Shiozak, M, Hass, K.M, Skinner, W, Zhao, S, Guo, C, Polacco, B.J, Yu, Z, Krogan, N.J, Kaake, R.M, Vale, R.D, Agard, D.A. 登録日 2023-08-02 公開日 2023-11-01 最終更新日 2023-11-22 実験手法 ELECTRON MICROSCOPY (7.7 Å) 主引用文献 De novo protein identification in mammalian sperm using in situ cryoelectron tomography and AlphaFold2 docking. Cell, 186, 2023
2V9G	L-RHAMNULOSE-1-PHOSPHATE ALDOLASE FROM ESCHERICHIA COLI (MUTANT Q6Y- L84W-E192A) 分子名称: L(+)-TARTARIC ACID, RHAMNULOSE-1-PHOSPHATE ALDOLASE, ZINC ION 著者 Grueninger, D, Schulz, G.E. 登録日 2007-08-23 公開日 2008-01-22 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Designed Protein-Protein Association. Science, 319, 2008
7VG7	Plexin B1 extracellular fragment in complex with lasso-grafted PB1m6A9 peptide 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Plexin-B1, TRIETHYLENE GLYCOL, ... 著者 Sugano, N.N, Hirata, K, Yamashita, K, Yamamoto, M, Arimori, T, Takagi, J. 登録日 2021-09-14 公開日 2022-08-17 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 De novo Fc-based receptor dimerizers differentially modulate PlexinB1 function. Structure, 30, 2022
7VF3	Plexin B1 extracellular fragment in complex with lasso-grafted PB1m7 peptide 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, DI(HYDROXYETHYL)ETHER, Plexin-B1, ... 著者 Sugano, N.N, Hirata, K, Yamashita, K, Yamamoto, M, Arimori, T, Takagi, J. 登録日 2021-09-10 公開日 2022-08-17 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.29 Å) 主引用文献 De novo Fc-based receptor dimerizers differentially modulate PlexinB1 function. Structure, 30, 2022

<23242526272829303132333435363738>