Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

2VMD
DownloadVisualize
BU of 2vmd by Molmil
Structure of the complex of discoidin II from Dictyostelium discoideum with beta-methyl-galactose
分子名称: 1,2-ETHANEDIOL, 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL, CALCIUM ION, ...
著者Aragao, K.S, Satre, M, Imberty, A, Varrot, A.
登録日2008-01-25
公開日2008-07-01
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structure Determination of Discoidin II from Dictyostelium Discoideum and Carbohydrate Binding Properties of the Lectin Domain.
Proteins, 73, 2008
2VME
DownloadVisualize
BU of 2vme by Molmil
Structure of the wild-type discoidin II from Dictyostelium discoideum
分子名称: CALCIUM ION, CHLORIDE ION, DISCOIDIN-2, ...
著者Aragao, K.S, Satre, M, Imberty, A, Varrot, A.
登録日2008-01-25
公開日2008-07-01
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (2.45 Å)
主引用文献Structure Determination of Discoidin II from Dictyostelium Discoideum and Carbohydrate Binding Properties of the Lectin Domain.
Proteins, 73, 2008
2VM9
DownloadVisualize
BU of 2vm9 by Molmil
Native structure of the recombinant discoidin II of Dictyostelium discoideum at 1.75 angstrom
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, CHLORIDE ION, ...
著者Aragao, K.S, Satre, M, Imberty, A, Varrot, A.
登録日2008-01-24
公開日2008-07-01
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Structure Determination of Discoidin II from Dictyostelium Discoideum and Carbohydrate Binding Properties of the Lectin Domain.
Proteins, 73, 2008
3ECQ
DownloadVisualize
BU of 3ecq by Molmil
Endo-alpha-N-acetylgalactosaminidase from Streptococcus pneumoniae: SeMet structure
分子名称: CALCIUM ION, Endo-alpha-N-acetylgalactosaminidase, GLYCEROL, ...
著者Caines, M.E.C, Zhu, H, Vuckovic, M, Strynadka, N.C.J.
登録日2008-09-01
公開日2008-09-09
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献The structural basis for T-antigen hydrolysis by Streptococcus pneumoniae: a target for structure-based vaccine design.
J.Biol.Chem., 283, 2008
2JKX
DownloadVisualize
BU of 2jkx by Molmil
Galactose oxidase. MatGO. Copper free, expressed in Pichia Pastoris.
分子名称: ACETATE ION, CALCIUM ION, GALACTOSE OXIDASE
著者Deacon, S.E, Mahmoud, K, Spooner, R.K, Firbank, S.J, Knowles, P.F, Phillips, S.E.V, McPherson, M.J.
登録日2008-09-01
公開日2008-09-09
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (1.84 Å)
主引用文献Enhanced Fructose Oxidase Activity in a Galactose Oxidase Variant
Chembiochem, 5, 2004
2VZ3
DownloadVisualize
BU of 2vz3 by Molmil
bleached galactose oxidase
分子名称: ACETATE ION, COPPER (II) ION, GALACTOSE OXIDASE
著者Rogers, M.S, Hurtado-Guerrero, R, Firbank, S.J, Halcrow, M.A, Dooley, D.M, Phillips, S.E.V, Knowles, P.F, McPherson, M.J.
登録日2008-07-29
公開日2008-09-16
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Cross-Link Formation of the Cysteine 228-Tyrosine 272 Catalytic Cofactor of Galactose Oxidase Does not Require Dioxygen.
Biochemistry, 47, 2008
2VZ1
DownloadVisualize
BU of 2vz1 by Molmil
Premat-galactose oxidase
分子名称: ACETATE ION, CALCIUM ION, GALACTOSE OXIDASE
著者Rogers, M.S, Hurtado-Guerrero, R, Firbank, S.J, Halcrow, M.A, Dooley, D.M, Phillips, S.E.V, Knowles, P.F, McPherson, M.J.
登録日2008-07-29
公開日2008-09-16
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (1.91 Å)
主引用文献Cross-Link Formation of the Cysteine 228-Tyrosine 272 Catalytic Cofactor of Galactose Oxidase Does not Require Dioxygen.
Biochemistry, 47, 2008
3EYP
DownloadVisualize
BU of 3eyp by Molmil
Crystal structure of putative alpha-L-fucosidase from Bacteroides thetaiotaomicron
分子名称: GLYCEROL, Putative alpha-L-fucosidase
著者Bonanno, J.B, Freeman, J, Bain, K.T, Hu, S, Romero, R, Wasserman, S, Sauder, J.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
登録日2008-10-21
公開日2008-11-04
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structure of putative alpha-L-fucosidase from Bacteroides thetaiotaomicron
To be Published
3F2Z
DownloadVisualize
BU of 3f2z by Molmil
Crystal structure of the C-terminal domain of a chitobiase (BF3579) from Bacteroides fragilis, Northeast Structural Genomics Consortium Target BfR260B
分子名称: uncharacterized protein BF3579
著者Forouhar, F, Lew, S, Seetharaman, J, Janjua, H, Xiao, R, Foote, E.L, Ciccosanti, C, Lee, D, Nair, R, Everett, J.K, Acton, T.B, Rost, B, Montelione, G.T, Hunt, J.F, Tong, L, Northeast Structural Genomics Consortium (NESG)
登録日2008-10-30
公開日2008-11-18
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Crystal structure of the C-terminal domain of a chitobiase (BF3579) from Bacteroides fragilis, Northeast Structural Genomics Consortium Target BfR260B
To be Published
2V5D
DownloadVisualize
BU of 2v5d by Molmil
Structure of a Family 84 Glycoside Hydrolase and a Family 32 Carbohydrate-Binding Module in Tandem from Clostridium perfringens.
分子名称: CALCIUM ION, O-GLCNACASE NAGJ
著者Ficko-Blean, E, Gregg, K.J, Adams, J.J, Hehemann, J.H, Smith, S.J, Czjzek, M, Boraston, A.B.
登録日2008-10-02
公開日2009-01-27
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献Portrait of an Enzyme: A Complete Structural Analysis of a Multi-Modular Beta-N-Acetylglucosaminidase from Clostridium Perfringens
J.Biol.Chem., 284, 2009
2KD7
DownloadVisualize
BU of 2kd7 by Molmil
Solution NMR structure of F5/8 type C-terminal domain of a putative chitobiase from Bacteroides thetaiotaomicron. Northeast Structural Genomics Consortium target BtR324B
分子名称: Putative chitobiase
著者Eletsky, A, Mills, J.L, Lee, H, Lee, D, Jiang, M, Ciccosanti, C, Xiao, R, Nair, R, Everett, J.K, Swapna, G.V.T, Acton, T.B, Rost, B, Montelione, G.T, Prestegard, J.H, Szyperski, T, Northeast Structural Genomics Consortium (NESG)
登録日2009-01-04
公開日2009-02-03
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Solution NMR structure of F5/8 type C-terminal domain of a putative chitobiase from Bacteroides thetaiotaomicron.
To be Published
3GGL
DownloadVisualize
BU of 3ggl by Molmil
X-Ray Structure of the C-terminal domain (277-440) of Putative chitobiase from Bacteroides thetaiotaomicron. Northeast Structural Genomics Consortium Target BtR324A.
分子名称: DI(HYDROXYETHYL)ETHER, Putative chitobiase, ZINC ION
著者Kuzin, A, Neely, H, Seetharaman, R, Lee, D, Ciccosanti, C, Foote, E.L, Janjua, H, Xiao, R, Nair, R, Rost, B, Acton, T, Everett, J.K, Montelione, G.T, Tong, L, Hunt, J, Northeast Structural Genomics Consortium (NESG)
登録日2009-02-28
公開日2009-03-31
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Northeast Structural Genomics Consortium Target BtR324A
To be Published
3GZA
DownloadVisualize
BU of 3gza by Molmil
Crystal structure of putative alpha-L-fucosidase (NP_812709.1) from BACTEROIDES THETAIOTAOMICRON VPI-5482 at 1.60 A resolution
分子名称: 1,2-ETHANEDIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, SODIUM ION, ...
著者Joint Center for Structural Genomics (JCSG)
登録日2009-04-06
公開日2009-04-21
最終更新日2023-02-01
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Crystal structure of putative alpha-L-fucosidase (NP_812709.1) from BACTEROIDES THETAIOTAOMICRON VPI-5482 at 1.60 A resolution
To be Published
2W1U
DownloadVisualize
BU of 2w1u by Molmil
A family 32 carbohydrate-binding module, from the Mu toxin produced by Clostridium perfringens, in complex with beta-D-glcNAc-beta(1,3) galNAc
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-2-acetamido-2-deoxy-alpha-D-galactopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-galactopyranose, ACETATE ION, ...
著者Ficko-Blean, E, Boraston, A.B.
登録日2008-10-20
公開日2009-05-05
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献N-Acetylglucosamine Recognition by a Family 32 Carbohydrate-Binding Module from Clostridium Perfringens Nagh.
J.Mol.Biol., 390, 2009
2W1Q
DownloadVisualize
BU of 2w1q by Molmil
Unique ligand binding specificity for a family 32 Carbohydrate- Binding Module from the Mu toxin produced by Clostridium perfringens
分子名称: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CALCIUM ION, HYALURONOGLUCOSAMINIDASE, ...
著者Ficko-Blean, E, Boraston, A.B.
登録日2008-10-20
公開日2009-05-05
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献N-Acetylglucosamine Recognition by a Family 32 Carbohydrate-Binding Module from Clostridium Perfringens Nagh.
J.Mol.Biol., 390, 2009
2WDB
DownloadVisualize
BU of 2wdb by Molmil
A family 32 carbohydrate-binding module, from the Mu toxin produced by Clostridium perfringens, in complex with beta-D-glcNAc-beta(1,2) mannose
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose, CALCIUM ION, HYALURONOGLUCOSAMINIDASE
著者Ficko-Blean, E, Boraston, A.B.
登録日2009-03-23
公開日2009-05-05
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.03 Å)
主引用文献N-Acetylglucosamine Recognition by a Family 32 Carbohydrate-Binding Module from Clostridium Perfringens Nagh.
J.Mol.Biol., 390, 2009
2W1S
DownloadVisualize
BU of 2w1s by Molmil
Unique ligand binding specificity of a family 32 Carbohydrate-Binding Module from the Mu toxin produced by Clostridium perfringens
分子名称: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CALCIUM ION, HYALURONOGLUCOSAMINIDASE, ...
著者Ficko-Blean, E, Boraston, A.B.
登録日2008-10-20
公開日2009-05-05
最終更新日2019-10-23
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献N-Acetylglucosamine Recognition by a Family 32 Carbohydrate-Binding Module from Clostridium Perfringens Nagh.
J.Mol.Biol., 390, 2009
2ZXQ
DownloadVisualize
BU of 2zxq by Molmil
Crystal structure of endo-alpha-N-acetylgalactosaminidase from Bifidobacterium longum (EngBF)
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, Endo-alpha-N-acetylgalactosaminidase, MANGANESE (II) ION
著者Suzuki, R, Katayama, T, Ashida, H, Yamamoto, K, Kitaoka, M, Fushinobu, S.
登録日2009-01-05
公開日2009-06-16
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystallographic and mutational analyses of substrate recognition of endo-{alpha}-N-acetylgalactosaminidase from Bifidobacterium longum.
J.Biochem., 2009
3HNM
DownloadVisualize
BU of 3hnm by Molmil
Crystal Structure of Protein BT_411 (putative chitobiase, fragment 298-461) from Bacteroides thetaiotaomicron, Northeast Structural Genomics Consortium Target BtR319D
分子名称: MAGNESIUM ION, Putative chitobiase
著者Kuzin, A, Abashidze, M, Seetharaman, J, Sahdev, S, Xiao, R, Ciccosanti, C, Foote, E.L, Lee, D, Everett, J.K, Nair, R, Acton, T.B, Rost, B, Montelione, G.T, Hunt, J.F, Tong, L, Northeast Structural Genomics Consortium (NESG)
登録日2009-05-31
公開日2009-07-07
最終更新日2019-07-24
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Northeast Structural Genomics Consortium Target BtR319D
To be published
2WUH
DownloadVisualize
BU of 2wuh by Molmil
Crystal structure of the DDR2 discoidin domain bound to a triple- helical collagen peptide
分子名称: COLLAGEN PEPTIDE, DISCOIDIN DOMAIN RECEPTOR 2
著者Carafoli, F, Bihan, D, Stathopoulos, S, Konitsiotis, A.D, Kvansakul, M, Farndale, R.W, Leitinger, B, Hohenester, E.
登録日2009-10-05
公開日2009-12-29
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Crystallographic Insight Into Collagen Recognition by Discoidin Domain Receptor 2
Structure, 17, 2009
3HNB
DownloadVisualize
BU of 3hnb by Molmil
Factor VIII Trp2313-His2315 segment is involved in membrane binding as shown by crystal structure of complex between factor VIII C2 domain and an inhibitor
分子名称: (2R)-1-(2,4-dichlorophenoxy)-3-[(2E)-2-imino-3-(2-piperidin-1-ylethyl)-2,3-dihydro-1H-benzimidazol-1-yl]propan-2-ol, Coagulation factor VIII
著者Liu, Z, Yuan, C.
登録日2009-05-31
公開日2010-01-19
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.15 Å)
主引用文献Trp2313-His2315 of factor VIII C2 domain is involved in membrane binding: structure of a complex between the C2 domain and an inhibitor of membrane binding.
J.Biol.Chem., 285, 2010
3HNY
DownloadVisualize
BU of 3hny by Molmil
Factor VIII Trp2313-His2315 segment is involved in membrane binding as shown by crystal structure of complex between factor VIII C2 domain and an inhibitor
分子名称: Coagulation factor VIII
著者Liu, Z, Yuan, C.
登録日2009-06-01
公開日2010-01-19
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.07 Å)
主引用文献Trp2313-His2315 of factor VIII C2 domain is involved in membrane binding: structure of a complex between the C2 domain and an inhibitor of membrane binding.
J.Biol.Chem., 285, 2010
3HOB
DownloadVisualize
BU of 3hob by Molmil
Factor VIII Trp2313-His2315 segment is involved in membrane binding as shown by crystal structure of complex between factor VIII C2 domain and an inhibitor
分子名称: Coagulation factor VIII
著者Liu, Z, Yuan, C.
登録日2009-06-01
公開日2010-01-19
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.07 Å)
主引用文献Trp2313-His2315 of factor VIII C2 domain is involved in membrane binding: structure of a complex between the C2 domain and an inhibitor of membrane binding.
J.Biol.Chem., 285, 2010
3I97
DownloadVisualize
BU of 3i97 by Molmil
B1 domain of human Neuropilin-1 bound with small molecule EG00229
分子名称: (S)-2-(3-(benzo[c][1,2,5]thiadiazole-4-sulfonamido)thiophene-2-carboxamido)-5-guanidinopentanoic acid, GLYCEROL, Neuropilin-1
著者Allerston, C.K, Djordjevic, S.
登録日2009-07-10
公開日2010-03-02
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Small molecule inhibitors of the neuropilin-1 vascular endothelial growth factor A (VEGF-A) interaction.
J.Med.Chem., 53, 2010
2W94
DownloadVisualize
BU of 2w94 by Molmil
Native structure of the Discoidin I from Dictyostelium discoideum at 1.8 angstrom resolution
分子名称: (4R)-2-METHYLPENTANE-2,4-DIOL, (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, ...
著者Saboia Aragao, K, Imberty, A, Varrot, A.
登録日2009-01-21
公開日2010-03-31
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Discoidin I from Dictyostelium Discoideum and Interactions with Oligosaccharides: Specificity, Affinity, Crystal Structures and Comparison with Discoidin II.
J.Mol.Biol., 400, 2010

224931

件を2024-09-11に公開中

PDB statisticsPDBj update infoContact PDBjnumon