2WWZ
 
 | | TAB2 NZF DOMAIN IN COMPLEX WITH Lys63-linked di-ubiquitin, P212121 | | 分子名称: | MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 7-INTERACTING PROTEIN 2, UBIQUITIN, ZINC ION | | 著者 | Kulathu, Y, Akutsu, M, Bremm, A, Hofmann, K, Komander, D. | | 登録日 | 2009-10-30 | | 公開日 | 2009-11-24 | | 最終更新日 | 2024-05-08 | | 実験手法 | X-RAY DIFFRACTION (1.4 Å) | | 主引用文献 | Two-Sided Ubiquitin Binding Explains Specificity of the Tab2 Nzf Domain
Nat.Struct.Mol.Biol., 16, 2009
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2WX0
 | | TAB2 NZF DOMAIN IN COMPLEX WITH Lys63-linked di-ubiquitin, P21 | | 分子名称: | MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 7-INTERACTING PROTEIN 2, UBIQUITIN, ZINC ION | | 著者 | Kulathu, Y, Akutsu, M, Bremm, A, Hofmann, K, Komander, D. | | 登録日 | 2009-10-30 | | 公開日 | 2009-11-24 | | 最終更新日 | 2024-05-08 | | 実験手法 | X-RAY DIFFRACTION (2.4 Å) | | 主引用文献 | Two-Sided Ubiquitin Binding Explains Specificity of the Tab2 Nzf Domain
Nat.Struct.Mol.Biol., 16, 2009
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4S22
 | | Crystal structure of K29 linked di-Ubiquitin | | 分子名称: | 1,2-ETHANEDIOL, GLYCEROL, IODIDE ION, ... | | 著者 | Kristariyanto, Y.A, Abdul Rehman, S.A, Campbell, D.G, Morrice, N.A, Johnson, C, Toth, R, Kulathu, Y. | | 登録日 | 2015-01-17 | | 公開日 | 2015-04-08 | | 最終更新日 | 2023-09-20 | | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | | 主引用文献 | K29-selective ubiquitin binding domain reveals structural basis of specificity and heterotypic nature of k29 polyubiquitin.
Mol.Cell, 58, 2015
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4UN2
 | | Crystal structure of the UBA domain of Dsk2 in complex with Ubiquitin | | 分子名称: | UBIQUITIN, UBIQUITIN DOMAIN-CONTAINING PROTEIN DSK2 | | 著者 | Michielssens, S, Peters, J.H, Ban, D, Pratihar, S, Seeliger, D, Sharma, M, Giller, K, Sabo, T.M, Becker, S, Lee, D, Griesinger, C, de Groot, B.L. | | 登録日 | 2014-05-23 | | 公開日 | 2014-08-27 | | 最終更新日 | 2024-01-10 | | 実験手法 | X-RAY DIFFRACTION (1.51 Å) | | 主引用文献 | A Designed Conformational Shift to Control Protein Binding Specificity.
Angew.Chem.Int.Ed.Engl., 53, 2014
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3EHV
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3EFU
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3EEC
 | | X-ray structure of human ubiquitin Cd(II) adduct | | 分子名称: | CADMIUM ION, Ubiquitin | | 著者 | Falini, G, Fermani, S, Tosi, G, Arnesano, F, Natile, G. | | 登録日 | 2008-09-04 | | 公開日 | 2009-03-10 | | 最終更新日 | 2023-11-01 | | 実験手法 | X-RAY DIFFRACTION (3 Å) | | 主引用文献 | Structural probing of Zn(II), Cd(II) and Hg(II) binding to human ubiquitin.
Chem.Commun.(Camb.), 45, 2008
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7KEO
 | | Crystal structure of K29-linked di-ubiquitin in complex with synthetic antigen binding fragment | | 分子名称: | PHOSPHATE ION, Synthetic antigen binding fragment, heavy chain, ... | | 著者 | Yu, Y, Zheng, Q, Erramilli, S, Pan, M, Kossiakoff, A, Liu, L, Zhao, M. | | 登録日 | 2020-10-11 | | 公開日 | 2021-07-28 | | 最終更新日 | 2024-04-03 | | 実験手法 | X-RAY DIFFRACTION (2.9 Å) | | 主引用文献 | K29-linked ubiquitin signaling regulates proteotoxic stress response and cell cycle.
Nat.Chem.Biol., 17, 2021
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8HTD
 | | Crystal structure of an effector from Chromobacterium violaceum in complex with ubiquitin | | 分子名称: | NAD(+)--protein-threonine ADP-ribosyltransferase, Ubiquitin | | 著者 | Tan, J, Wang, X, Zhou, Y, Zhu, Y. | | 登録日 | 2022-12-21 | | 公開日 | 2023-11-22 | | 最終更新日 | 2024-04-10 | | 実験手法 | X-RAY DIFFRACTION (1.848 Å) | | 主引用文献 | Molecular basis of threonine ADP-ribosylation of ubiquitin by bacterial ARTs.
Nat.Chem.Biol., 20, 2024
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8HTE
 | | Crystal structure of an effector mutant in complex with ubiquitin | | 分子名称: | GLYCEROL, NAD(+)--protein-threonine ADP-ribosyltransferase, NICOTINAMIDE, ... | | 著者 | Tan, J, Wang, X, Zhou, Y, Zhu, Y. | | 登録日 | 2022-12-21 | | 公開日 | 2023-11-22 | | 最終更新日 | 2024-04-10 | | 実験手法 | X-RAY DIFFRACTION (2.307 Å) | | 主引用文献 | Molecular basis of threonine ADP-ribosylation of ubiquitin by bacterial ARTs.
Nat.Chem.Biol., 20, 2024
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8HTF
 | | Crystal structure of an effector in complex with ubiquitin | | 分子名称: | NAD(+)--protein-threonine ADP-ribosyltransferase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, Ubiquitin-40S ribosomal protein S27a (Fragment) | | 著者 | Tan, J, Wang, X, Zhou, Y, Zhu, Y. | | 登録日 | 2022-12-21 | | 公開日 | 2023-11-22 | | 最終更新日 | 2024-04-10 | | 実験手法 | X-RAY DIFFRACTION (2.151 Å) | | 主引用文献 | Molecular basis of threonine ADP-ribosylation of ubiquitin by bacterial ARTs.
Nat.Chem.Biol., 20, 2024
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8HM1
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8HTC
 | | Crystal structure of a SeMet-labeled effector from Chromobacterium violaceum in complex with Ubiquitin | | 分子名称: | NAD(+)--protein-threonine ADP-ribosyltransferase, Ubiquitin-40S ribosomal protein S27a (Fragment) | | 著者 | Tan, J, Wang, X, Zhou, Y, Zhu, Y. | | 登録日 | 2022-12-21 | | 公開日 | 2023-11-22 | | 最終更新日 | 2024-04-10 | | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | | 主引用文献 | Molecular basis of threonine ADP-ribosylation of ubiquitin by bacterial ARTs.
Nat.Chem.Biol., 20, 2024
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8HM2
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8IC9
 | | Lys48-linked K48C-diubiquitin | | 分子名称: | Polyubiquitin-B, Ubiquitin | | 著者 | Hiranyakorn, M, Yagi-Utsumi, M, Yanaka, S, Ohtsuka, N, Momiyama, N, Satoh, T, Kato, K. | | 登録日 | 2023-02-11 | | 公開日 | 2023-04-26 | | 最終更新日 | 2024-05-29 | | 実験手法 | X-RAY DIFFRACTION (1.25 Å) | | 主引用文献 | Mutational and Environmental Effects on the Dynamic Conformational Distributions of Lys48-Linked Ubiquitin Chains.
Int J Mol Sci, 24, 2023
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8ID2
 | | Crystal structure of the ubiquitin-like domain in the SF3A1 subunit of human U2 snRNP complexed with the stem-loop 4 of U1 snRNA | | 分子名称: | RNA (5'-R(*GP*GP*GP*GP*AP*CP*UP*GP*CP*GP*UP*UP*CP*GP*CP*GP*CP*UP*UP*UP*CP*CP*CP*C)-3'), Splicing factor 3A subunit 1 | | 著者 | Terawaki, S, Nameki, N, Kuwasako, K. | | 登録日 | 2023-02-12 | | 公開日 | 2023-05-17 | | 最終更新日 | 2024-05-29 | | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | | 主引用文献 | Structural insights into recognition of SL4, the UUCG stem-loop, of human U1 snRNA by the ubiquitin-like domain, including the C-terminal tail in the SF3A1 subunit of U2 snRNP.
J.Biochem., 174, 2023
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4WZP
 | | Ser65 phosphorylated ubiquitin, major conformation | | 分子名称: | SULFATE ION, ubiquitin | | 著者 | Wauer, T, Wagstaff, J, Freund, S.M.V, Komander, D. | | 登録日 | 2014-11-20 | | 公開日 | 2015-01-14 | | 最終更新日 | 2024-01-10 | | 実験手法 | X-RAY DIFFRACTION (1.9 Å) | | 主引用文献 | Ubiquitin Ser65 phosphorylation affects ubiquitin structure, chain assembly and hydrolysis.
Embo J., 34, 2015
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1P1A
 | | NMR structure of ubiquitin-like domain of hHR23B | | 分子名称: | UV excision repair protein RAD23 homolog B | | 著者 | Ryu, K.S, Lee, K.J, Bae, S.H, Kim, B.K, Kim, K.A, Choi, B.S. | | 登録日 | 2003-04-11 | | 公開日 | 2004-07-13 | | 最終更新日 | 2024-05-29 | | 実験手法 | SOLUTION NMR | | 主引用文献 | Binding surface mapping of intra- and interdomain interactions among hHR23B, ubiquitin, and polyubiquitin binding site 2 of S5a
J.Biol.Chem., 278, 2003
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1P0R
 | | Solution Structure of UBL5 a human Ubiquitin-Like Protein | | 分子名称: | ubiquitin-like 5 | | 著者 | McNally, T, Huang, Q, Janis, R.S, Liu, Z, Olejniczak, E.T, Reilly, R.M. | | 登録日 | 2003-04-10 | | 公開日 | 2003-10-28 | | 最終更新日 | 2024-05-22 | | 実験手法 | SOLUTION NMR | | 主引用文献 | Structural analysis of UBL5, a novel ubiquitin-like modifier
Protein Sci., 12, 2003
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4PIH
 | | X-ray crystal structure of the K33S mutant of ubiquitin | | 分子名称: | CALCIUM ION, CHLORIDE ION, Ubiquitin | | 著者 | Loll, P.J, Xu, P.J, Schmidt, J, Melideo, S.L. | | 登録日 | 2014-05-08 | | 公開日 | 2014-10-29 | | 最終更新日 | 2023-09-27 | | 実験手法 | X-RAY DIFFRACTION (1.5 Å) | | 主引用文献 | Enhancing ubiquitin crystallization through surface-entropy reduction.
Acta Crystallogr.,Sect.F, 70, 2014
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1NDD
 | | STRUCTURE OF NEDD8 | | 分子名称: | CHLORIDE ION, PROTEIN (UBIQUITIN-LIKE PROTEIN NEDD8), SULFATE ION | | 著者 | Whitby, F.G, Xia, G, Pickart, C.M, Hill, C.P. | | 登録日 | 1998-08-21 | | 公開日 | 1999-02-23 | | 最終更新日 | 2023-08-16 | | 実験手法 | X-RAY DIFFRACTION (1.6 Å) | | 主引用文献 | Crystal structure of the human ubiquitin-like protein NEDD8 and interactions with ubiquitin pathway enzymes.
J.Biol.Chem., 273, 1998
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1P98
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4PIJ
 | | X-ray crystal structure of the K11S/K63S double mutant of ubiquitin | | 分子名称: | GLYCEROL, SULFATE ION, Ubiquitin | | 著者 | Loll, P.J, Xu, P.J, Schmidt, J, Melideo, S.L. | | 登録日 | 2014-05-08 | | 公開日 | 2014-10-29 | | 最終更新日 | 2023-09-27 | | 実験手法 | X-RAY DIFFRACTION (1.5 Å) | | 主引用文献 | Enhancing ubiquitin crystallization through surface-entropy reduction.
Acta Crystallogr.,Sect.F, 70, 2014
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4PIG
 | | Crystal structure of the ubiquitin K11S mutant | | 分子名称: | CALCIUM ION, CHLORIDE ION, SODIUM ION, ... | | 著者 | Loll, P.J, Xu, P.J, Schmidt, J, Melideo, S.L. | | 登録日 | 2014-05-08 | | 公開日 | 2014-10-29 | | 最終更新日 | 2023-09-27 | | 実験手法 | X-RAY DIFFRACTION (1.952 Å) | | 主引用文献 | Enhancing ubiquitin crystallization through surface-entropy reduction.
Acta Crystallogr.,Sect.F, 70, 2014
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1OGW
 | | Synthetic Ubiquitin with fluoro-Leu at 50 and 67 | | 分子名称: | UBIQUITIN | | 著者 | Alexeev, D, Ramage, R, Young, D.W, Sawyer, L. | | 登録日 | 2003-05-13 | | 公開日 | 2003-05-30 | | 最終更新日 | 2023-12-13 | | 実験手法 | X-RAY DIFFRACTION (1.32 Å) | | 主引用文献 | Synthesis, Structural and Biological Studies of Ubiquitin Mutants Containing (2S, 4S)-5-Fluoroleucine Residues Strategically Placed in the Hydrophobic Core
Chembiochem, 4, 2003
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