PDB: 2121 件ウェブページステータス検索Chemie searchBIRD

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8EYU	Structure of Beetroot dimer bound to DFAME 分子名称: POTASSIUM ION, RNA (49-MER), methyl (2E)-3-{(4Z)-4-[(3,5-difluoro-4-hydroxyphenyl)methylidene]-1-methyl-5-oxo-4,5-dihydro-1H-imidazol-2-yl}prop-2-enoate 著者 Passalacqua, L.F.M, Ferre-D'Amare, A.R. 登録日 2022-10-28 公開日 2023-05-31 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Co-crystal structures of the fluorogenic aptamer Beetroot show that close homology may not predict similar RNA architecture. Nat Commun, 14, 2023
6MGH	X-ray structure of monomeric near-infrared fluorescent protein miRFP670nano 分子名称: 3-[2-[(~{Z})-[5-[(~{Z})-[(3~{S},4~{R})-3-ethenyl-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-pyrrol-2-ylidene]methyl]-5-[(~{Z})-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-1~{H}-pyrrol-3-yl]propanoic acid, GLYCEROL, ISOPROPYL ALCOHOL, ... 著者 Pletnev, S. 登録日 2018-09-13 公開日 2018-12-19 最終更新日 2019-01-30 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Smallest near-infrared fluorescent protein evolved from cyanobacteriochrome as versatile tag for spectral multiplexing. Nat Commun, 10, 2019
3URN	Crystal Structure of PTE mutant H254G/H257W/L303T/K185R/I274N/A80V/S61T with cyclohexyl methylphosphonate inhibitor 分子名称: COBALT (II) ION, IMIDAZOLE, Parathion hydrolase, ... 著者 Tsai, P, Fox, N.G, Li, Y, Barondeau, D.P, Raushel, F.M. 登録日 2011-11-22 公開日 2012-08-01 最終更新日 2023-12-06 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Enzymes for the homeland defense: optimizing phosphotriesterase for the hydrolysis of organophosphate nerve agents. Biochemistry, 51, 2012
4PQI	Crystal structure of glutathione transferase lambda3 from Populus trichocarpa 分子名称: CALCIUM ION, GLUTATHIONE, In2-1 family protein, ... 著者 Lallement, P.A, Meux, E, Gualberto, J.M, Prosper, P, Didierjean, C, Haouz, A, Saul, F, Rouhier, N, Hecker, A. 登録日 2014-03-03 公開日 2014-06-25 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Structural and enzymatic insights into Lambda glutathione transferases from Populus trichocarpa, monomeric enzymes constituting an early divergent class specific to terrestrial plants. Biochem.J., 462, 2014
5H7H	Crystal structure of the BCL6 BTB domain in complex with F1324(10-13) 分子名称: 1,2-ETHANEDIOL, B-cell lymphoma 6 protein, F1324 peptide residues 10-13 著者 Sogabe, S, Ida, K, Lane, W, Snell, G. 登録日 2016-11-18 公開日 2016-12-07 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Discovery of high-affinity BCL6-binding peptide and its structure-activity relationship. Biochem. Biophys. Res. Commun., 482, 2017
3UPM	Crystal Structure of PTE mutant H254Q/H257F/K185R/I274N 分子名称: COBALT (II) ION, Parathion hydrolase 著者 Tsai, P, Fox, N.G, Li, Y, Barondeau, D.P, Raushel, F.M. 登録日 2011-11-18 公開日 2012-08-01 最終更新日 2023-12-06 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Enzymes for the homeland defense: optimizing phosphotriesterase for the hydrolysis of organophosphate nerve agents. Biochemistry, 51, 2012
8SFX	High Affinity nanobodies against GFP 分子名称: D-MALATE, GLYCEROL, Green fluorescent protein, ... 著者 Ketaren, N.E, Rout, M.P, Bonanno, J.B, Almo, S.C. 登録日 2023-04-11 公開日 2024-05-22 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 High Affinity nanobodies against GFP To Be Published
8HGI	Crystal structure of VNAR aGFP14 in complex with GFP 分子名称: GFP, VNAR aGFP14 著者 Zheng, P, Zhu, C, Jin, T. 登録日 2022-11-14 公開日 2023-09-27 最終更新日 2024-10-02 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Selection, identification and crystal structure of shark-derived single-domain antibodies against a green fluorescent protein. Int.J.Biol.Macromol., 247, 2023
3V3D	Crystal Structure of an eYFP single mutant 分子名称: SULFATE ION, Yellow fluorescent protein 著者 Ngan, N.B, Van Hecke, K, Van Meervelt, L. 登録日 2011-12-13 公開日 2012-12-26 最終更新日 2023-12-06 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Improving the second-order nonlinear optical response of fluorescent proteins: the symmetry argument. J.Am.Chem.Soc., 135, 2013
5FJI	Three-dimensional structures of two heavily N-glycosylated Aspergillus sp. Family GH3 beta-D-glucosidases 分子名称: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, BETA-GLUCOSIDASE, ... 著者 Agirre, J, Ariza, A, Offen, W.A, Turkenburg, J.P, Roberts, S.M, McNicholas, S, Harris, P.V, McBrayer, B, Dohnalek, J, Cowtan, K.D, Davies, G.J, Wilson, K.S. 登録日 2015-10-09 公開日 2016-02-10 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Three-Dimensional Structures of Two Heavily N-Glycosylated Aspergillus Sp. Family Gh3 Beta-D-Glucosidases Acta Crystallogr.,Sect.D, 72, 2016
5DMY	Beta-galactosidase - construct 33-930 分子名称: 1,2-ETHANEDIOL, Beta-galactosidase, MAGNESIUM ION, ... 著者 Watson, K.A, Lazidou, A. 登録日 2015-09-09 公開日 2016-10-05 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Rational protein engineering toward the development of a beta-galactosidase with improved functional properties To Be Published
2VMB	The three-dimensional structure of the cytoplasmic domains of EpsF from the Type 2 Secretion System of Vibrio cholerae 分子名称: CALCIUM ION, GENERAL SECRETION PATHWAY PROTEIN F 著者 Abendroth, J, Korotkov, K.V, Mitchell, D.D, Kreger, A, Hol, W.G.J. 登録日 2008-01-25 公開日 2009-02-10 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 The Three-Dimensional Structure of the Cytoplasmic Domains of Epsf from the Type 2 Secretion System of Vibrio Cholerae. J.Struct.Biol., 166, 2009
4DKM	Crystal Structure of Amphioxus GFPc1a 分子名称: Amphioxus Green Fluorescent Protein, GFPc1a 著者 Deheyn, D.D, Bomati, E.K. 登録日 2012-02-03 公開日 2013-05-15 最終更新日 2023-12-06 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Fluorescent proteins in Amphioxus have strickingly different brightness, yet only few (but key) molecular differences To be Published
4DE8	LytR-Cps2a-Psr family protein with bound octaprenyl monophosphate lipid 分子名称: (2Z,6Z,10Z,14Z,18Z,22Z,26Z)-3,7,11,15,19,23,27,31-octamethyldotriaconta-2,6,10,14,18,22,26,30-octaen-1-yl dihydrogen phosphate, Cps2A, DI(HYDROXYETHYL)ETHER 著者 Eberhardt, A, Hoyland, C.N, Vollmer, D.V, Bisle, S, Cleverley, R.M, Johnsborg, O, Havarstein, L.S, Lewis, R.J, Vollmer, W. 登録日 2012-01-20 公開日 2012-04-04 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Attachment of Capsular Polysaccharide to the Cell Wall in Streptococcus pneumoniae. Microb Drug Resist, 18, 2012
4DXQ	Crystal Structure of a reconstructed Kaede-type Red Fluorescent Protein, LEA Q38A 分子名称: LEA Q38A GFP-LIKE PROTEINS 著者 Kim, H, Wachter, R.M. 登録日 2012-02-27 公開日 2013-02-27 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Acid-Base Catalysis and Crystal Structures of a Least Evolved Ancestral GFP-like Protein Undergoing Green-to-Red Photoconversion. Biochemistry, 52, 2013
2PSP	Porcine pancreatic spasmolytic polypeptide 分子名称: PORCINE PANCREATIC SPASMOLYTIC POLYPEPTIDE 著者 Petersen, T.N, Henriksen, A, Gajhede, M. 登録日 1996-02-01 公開日 1996-07-11 最終更新日 2019-12-25 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Structure of porcine pancreatic spasmolytic polypeptide at 1.95 A resolution. Acta Crystallogr.,Sect.D, 52, 1996
4N0H	Crystal structure of S. cerevisiae mitochondrial GatFAB 分子名称: Glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial, Glutamyl-tRNA(Gln) amidotransferase subunit B, ... 著者 Araiso, Y, Ishitani, R, Nureki, O. 登録日 2013-10-02 公開日 2014-04-16 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (1.952 Å) 主引用文献 Crystal structure of Saccharomyces cerevisiae mitochondrial GatFAB reveals a novel subunit assembly in tRNA-dependent amidotransferases Nucleic Acids Res., 42, 2014
4W6H	Crystal Structure of Full-Length Split GFP Mutant D190C Disulfide Dimer, P 65 Space Group 分子名称: fluorescent protein D190C 著者 Leibly, D.J, Waldo, G.S, Yeates, T.O. 登録日 2014-08-20 公開日 2015-02-18 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (1.953 Å) 主引用文献 A Suite of Engineered GFP Molecules for Oligomeric Scaffolding. Structure, 23, 2015
8U21	A Highly Stable Variant of Corynactis Californica Green Fluorescent Protein, ccGFP E6 分子名称: Green Fluorescent Protein Variant E6, ccGFP E6 著者 Hung, L.-W, Terwilliger, T.C, Waldo, G, Nguyen, H.B. 登録日 2023-09-05 公開日 2024-01-31 最終更新日 2024-10-09 実験手法 X-RAY DIFFRACTION (1.96 Å) 主引用文献 Engineering highly stable variants of Corynactis californica green fluorescent proteins. Protein Sci., 33, 2024
2HR1	Ternary structure of WT M.HhaI C5-Cytosine DNA methyltransferase with unmodified DNA and AdoHcy 分子名称: 5'-D(*GP*AP*TP*AP*GP*CP*GP*CP*TP*AP*TP*C)-3', 5'-D(*TP*GP*AP*TP*AP*GP*CP*GP*CP*TP*AP*TP*C)-3', Modification methylase HhaI, ... 著者 Shieh, F. 登録日 2006-07-19 公開日 2006-09-19 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (1.96 Å) 主引用文献 The Role of Arg165 Towards Base Flipping, Base Stabilization and Catalysis in M.HhaI. J.Mol.Biol., 362, 2006
2AKY	HIGH-RESOLUTION STRUCTURES OF ADENYLATE KINASE FROM YEAST LIGATED WITH INHIBITOR AP5A, SHOWING THE PATHWAY OF PHOSPHORYL TRANSFER 分子名称: ADENYLATE KINASE, BIS(ADENOSINE)-5'-PENTAPHOSPHATE, MAGNESIUM ION 著者 Abele, U, Schulz, G.E. 登録日 1995-07-28 公開日 1995-11-14 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (1.96 Å) 主引用文献 High-resolution structures of adenylate kinase from yeast ligated with inhibitor Ap5A, showing the pathway of phosphoryl transfer. Protein Sci., 4, 1995
5NHN	Super-Folder Green Fluorescent Protein Artificiall dimer linked via 148 position 分子名称: 1,2-ETHANEDIOL, GLYCEROL, Green fluorescent protein, ... 著者 Worthy, H.L, Rizkallah, P.J. 登録日 2017-03-22 公開日 2018-09-26 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.96 Å) 主引用文献 Positive functional synergy of structurally integrated artificial protein dimers assembled by Click chemistry Commun Chem, 2019
1ZIO	PHOSPHOTRANSFERASE 分子名称: ADENYLATE KINASE, BIS(ADENOSINE)-5'-PENTAPHOSPHATE, MAGNESIUM ION, ... 著者 Berry, M.B, Phillips Jr, G.N. 登録日 1996-06-07 公開日 1997-07-07 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (1.96 Å) 主引用文献 Crystal structures of Bacillus stearothermophilus adenylate kinase with bound Ap5A, Mg2+ Ap5A, and Mn2+ Ap5A reveal an intermediate lid position and six coordinate octahedral geometry for bound Mg2+ and Mn2+. Proteins, 32, 1998
3MNE	Crystal structure of the agonist form of mouse glucocorticoid receptor stabilized by F608S mutation at 1.96A 分子名称: DEXAMETHASONE, GLYCEROL, Glucocorticoid receptor, ... 著者 Schoch, G.A, Seitz, T, Benz, J, Banner, D, Stihle, M, D'Arcy, B, Thoma, R, Sterner, R, Hennig, M, Ruf, A. 登録日 2010-04-21 公開日 2010-09-15 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (1.96 Å) 主引用文献 Enhancing the stability and solubility of the glucocorticoid receptor ligand-binding domain by high-throughput library screening. J.Mol.Biol., 403, 2010
8CCS	80S S. cerevisiae ribosome with ligands in hybrid-1 pre-translocation (PRE-H1) complex 分子名称: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0-A, ... 著者 Milicevic, N, Jenner, L, Myasnikov, A, Yusupov, M, Yusupova, G. 登録日 2023-01-27 公開日 2023-09-20 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (1.97 Å) 主引用文献 mRNA reading frame maintenance during eukaryotic ribosome translocation. Nature, 625, 2024

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