PDB: 45953 件ウェブページステータス検索Chemie searchBIRD

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4PSN	Crystal structure of apeThermo-DBP-RP2 分子名称: GLYCEROL, IMIDAZOLE, ssDNA binding protein 著者 Gahlei, H, von Moeller, H, Eppers, D, Loll, B, Wahl, M.C. 登録日 2014-03-07 公開日 2014-04-30 最終更新日 2017-11-22 実験手法 X-RAY DIFFRACTION (2.05 Å) 主引用文献 Entrapment of DNA in an intersubunit tunnel system of a single-stranded DNA-binding protein. Nucleic Acids Res., 42, 2014
4PSL	Crystal structure of pfuThermo-DBP-RP1 (crystal form I) 分子名称: SULFATE ION, ssDNA binding protein 著者 Gahlei, H, von Moeller, H, Eppers, D, Sohmen, D, Wilson, D.N, Loll, B, Wahl, M.C. 登録日 2014-03-07 公開日 2014-04-30 最終更新日 2014-06-25 実験手法 X-RAY DIFFRACTION (3.5 Å) 主引用文献 Entrapment of DNA in an intersubunit tunnel system of a single-stranded DNA-binding protein. Nucleic Acids Res., 42, 2014
1R0O	Crystal Structure of the Heterodimeric Ecdysone Receptor DNA-binding Complex 分子名称: Ecdysone Response Element, Ecdysone receptor, Ultraspiracle protein, ... 著者 Devarakonda, S, Harp, J.M, Kim, Y, Ozyhar, A, Rastinejad, F. 登録日 2003-09-22 公開日 2003-10-21 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (2.24 Å) 主引用文献 Structure of the Heterodimeric Ecdysone Receptor DNA-binding Complex Embo J., 22, 2003
5HRF	The crystal structure of AsfvPolX: DNA5: dGTP ternary complex 分子名称: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, DNA (5'-D(*CP*AP*GP*GP*AP*TP*CP*CP*T*)-3'), DNA polymerase beta-like protein, ... 著者 Chen, Y.Q, Zhang, J, Gan, J.H. 登録日 2016-01-23 公開日 2017-01-18 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2.25 Å) 主引用文献 The crystal structure of Se-AsfvPolX(L52/163M mutant) in complex with 1nt-gap DNA1 To Be Published
6LTZ	Induced DNA bending by unique dimerization of HigA antitoxin 分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, DI(HYDROXYETHYL)ETHER, GLYCEROL, ... 著者 Park, J.Y, Lee, B.J. 登録日 2020-01-23 公開日 2020-07-15 最終更新日 2024-03-27 実験手法 X-RAY DIFFRACTION (1.973 Å) 主引用文献 Induced DNA bending by unique dimerization of HigA antitoxin. Iucrj, 7, 2020
6M4T	U shaped head to head four-way junction in d(TTCTGCTGCTGAA) sequence 分子名称: COBALT (II) ION, DNA (5'-D(P*(UD)P*TP*CP*TP*GP*CP*TP*GP*CP*TP*GP*AP*A)-3'), N4-[4-[(6-chloranyl-2-methoxy-acridin-9-yl)amino]butyl]-1,3,5-triazine-2,4,6-triamine 著者 Hou, M.H, Chien, C.M, Satange, R.B, Wu, P.C. 登録日 2020-03-09 公開日 2020-07-15 最終更新日 2024-03-27 実験手法 X-RAY DIFFRACTION (1.55 Å) 主引用文献 Structural Basis for Targeting T:T Mismatch with Triaminotriazine-Acridine Conjugate Induces a U-Shaped Head-to-Head Four-Way Junction in CTG Repeat DNA. J.Am.Chem.Soc., 142, 2020
6M75	C-Myc DNA binding protein complex 分子名称: DNA (5'-D(*TP*CP*TP*TP*AP*TP*T)-3'), RNA-binding motif, single-stranded-interacting protein 1, ... 著者 Aggarwal, P, Bhavesh, N.S. 登録日 2020-03-17 公開日 2021-03-17 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.57 Å) 主引用文献 Hinge like domain motion facilitates human RBMS1 protein binding to proto-oncogene c-myc promoter. Nucleic Acids Res., 49, 2021
1A7G	THE CRYSTAL STRUCTURE OF THE E2 DNA-BINDING DOMAIN FROM HUMAN PAPILLOMAVIRUS AT 2.4 ANGSTROMS 分子名称: REGULATORY PROTEIN E2, SULFATE ION 著者 Bussiere, D.E, Giranda, V.L. 登録日 1998-03-13 公開日 1999-04-27 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Structure of the E2 DNA-binding domain from human papillomavirus serotype 31 at 2.4 A. Acta Crystallogr.,Sect.D, 54, 1998
6QEC	DNA binding domain of LUX ARRYTHMO in complex with DNA 分子名称: DNA (5'-D(*AP*TP*TP*CP*GP*AP*AP*TP*AP*T*TP*AP*TP*AP*TP*TP*CP*GP*AP*A)-3'), GLYCEROL, Transcription factor LUX 著者 Zubieta, C, Nayak, A. 登録日 2019-01-07 公開日 2020-02-05 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Molecular mechanisms of Evening Complex activity inArabidopsis. Proc.Natl.Acad.Sci.USA, 117, 2020
1PRU	PURINE REPRESSOR DNA-BINDING DOMAIN DNA BINDING 分子名称: PURINE REPRESSOR 著者 Nagadoi, A, Morikawa, S, Nakamura, H, Enari, M, Kobayashi, K, Yamamoto, H, Sampei, G, Mizobuchi, K, Schumacher, M.A, Brennan, R.G, Nishimura, Y. 登録日 1995-05-08 公開日 1996-03-08 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Structural comparison of the free and DNA-bound forms of the purine repressor DNA-binding domain. Structure, 3, 1995
1PRV	PURINE REPRESSOR DNA-BINDING DOMAIN DNA BINDING 分子名称: PURINE REPRESSOR 著者 Nagadoi, A, Morikawa, S, Nakamura, H, Enari, M, Kobayashi, K, Yamamoto, H, Sampei, G, Mizobuchi, K, Schumacher, M.A, Brennan, R.G, Nishimura, Y. 登録日 1995-05-08 公開日 1996-03-08 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Structural comparison of the free and DNA-bound forms of the purine repressor DNA-binding domain. Structure, 3, 1995
7M2U	Nucleotide Excision Repair complex TFIIH Rad4-33 分子名称: CALCIUM ION, DNA repair helicase RAD25, DNA repair helicase RAD3, ... 著者 van Eeuwen, T, Murakami, K. 登録日 2021-03-17 公開日 2021-07-28 実験手法 ELECTRON MICROSCOPY (8.2 Å) 主引用文献 Cryo-EM structure of TFIIH/Rad4-Rad23-Rad33 in damaged DNA opening in nucleotide excision repair. Nat Commun, 12, 2021
3C94	ExoI/SSB-Ct complex 分子名称: Exodeoxyribonuclease I, MAGNESIUM ION, Single-stranded DNA-binding C-terminal tail peptide 著者 Lu, D, Keck, J.L. 登録日 2008-02-15 公開日 2008-07-08 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Structural basis of Escherichia coli single-stranded DNA-binding protein stimulation of exonuclease I. Proc.Natl.Acad.Sci.USA, 105, 2008
1R0N	Crystal Structure of Heterodimeric Ecdsyone receptor DNA binding complex 分子名称: Ecdsyone Response Element, Ecdysone Response Element, Ecdysone receptor, ... 著者 Devarakonda, S, Harp, J.M, Kim, Y, Ozyhar, A, Rastinejad, F. 登録日 2003-09-22 公開日 2003-10-21 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Structure of the heterodimeric Ecdysone Receptor DNA-binding complex Embo J., 22, 2003
6LU0	Crystal structure of Cas12i2 ternary complex with 12 nt spacer 分子名称: Cas12i2, DNA (5'-D(*GP*CP*CP*GP*CP*TP*TP*TP*CP*TP*T)-3'), DNA (5'-D(*GP*CP*TP*TP*GP*CP*TP*CP*TP*GP*TP*TP*GP*AP*AP*AP*GP*CP*GP*GP*C)-3'), ... 著者 Huang, X, Sun, W, Cheng, Z, Chen, M, Li, X, Wang, J, Sheng, G, Gong, W, Wang, Y. 登録日 2020-01-24 公開日 2020-10-28 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (3.22 Å) 主引用文献 Structural basis for two metal-ion catalysis of DNA cleavage by Cas12i2. Nat Commun, 11, 2020
8ILD	The crystal structure of native dGTP:DNApre-I:Pol X substrate ternary complex 分子名称: DNA (5'-D(*CP*AP*GP*GP*AP*TP*CP*CP*T)-3'), GUANOSINE-5'-TRIPHOSPHATE, MANGANESE (II) ION, ... 著者 Qin, T, Chen, Y.Q, Gan, J.H, Huang, Z. 登録日 2023-03-03 公開日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.25 Å) 主引用文献 Structural Insight into Polymerase Mechanism via a Chiral Center Generated with a Single Selenium Atom. Int J Mol Sci, 24, 2023
8ILE	The crystal structure of dGTPalphaSe-Rp:DNApre-II:Pol X substrate ternary complex 分子名称: DNA (5'-D(*CP*TP*GP*GP*AP*TP*CP*CP*A)-3'), MANGANESE (II) ION, Repair DNA polymerase X, ... 著者 Qin, T, Gan, J.H, Huang, Z. 登録日 2023-03-03 公開日 2024-01-10 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Structural Insight into Polymerase Mechanism via a Chiral Center Generated with a Single Selenium Atom. Int J Mol Sci, 24, 2023
5O8Z	Conformational dynamism for DNA interaction in Salmonella typhimurium RcsB response regulator. 分子名称: BERYLLIUM TRIFLUORIDE ION, MAGNESIUM ION, Transcriptional regulatory protein RcsB 著者 Casino, P, Marina, A, Miguel-Romero, L, Huesa, J. 登録日 2017-06-14 公開日 2017-11-15 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Conformational dynamism for DNA interaction in the Salmonella RcsB response regulator. Nucleic Acids Res., 46, 2018
5O8Y	Conformational dynamism for DNA interaction in Salmonella typhimurium RcsB response regulator. 分子名称: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL, SULFATE ION, Transcriptional regulatory protein RcsB 著者 Casino, P, Marina, A, Miguel-Romero, L, Huesa, J. 登録日 2017-06-14 公開日 2017-11-15 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Conformational dynamism for DNA interaction in the Salmonella RcsB response regulator. Nucleic Acids Res., 46, 2018
8ILF	The crystal structure of dGTPalphaSe-Sp:DNApre-II:Pol X substrate ternary complex 分子名称: DNA (5'-D(*CP*TP*GP*GP*AP*TP*CP*CP*A)-3'), MANGANESE (II) ION, Repair DNA polymerase X, ... 著者 Qin, T, Zhao, Q.W, Gan, J.H, Huang, Z. 登録日 2023-03-03 公開日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Structural Insight into Polymerase Mechanism via a Chiral Center Generated with a Single Selenium Atom. Int J Mol Sci, 24, 2023
1RUN	CATABOLITE GENE ACTIVATOR PROTEIN (CAP)/DNA COMPLEX + ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE 分子名称: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, DNA (5'-D(*CP*TP*AP*GP*AP*TP*CP*AP*CP*AP*TP*TP*TP*TP*TP*CP*G )-3'), DNA (5'-D(*GP*CP*GP*AP*AP*AP*AP*AP*TP*GP*TP*GP*AP*T)-3'), ... 著者 Parkinson, G.N, Gunasekera, A, Vojtechovsky, J, Zhang, X, Kunkel, T.A, Berman, H.M, Ebright, R.H. 登録日 1996-05-26 公開日 1997-01-10 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Aromatic hydrogen bond in sequence-specific protein DNA recognition. Nat.Struct.Biol., 3, 1996
4IX7	Crystal Structure of the insv-BEN domain complexed to its DNA target site 分子名称: 5'-D(*GP*TP*TP*CP*CP*AP*AP*TP*TP*GP*GP*AP*A)-3', RE55538p 著者 Ren, A, Serganov, A, Patel, D.J. 登録日 2013-01-24 公開日 2013-03-20 最終更新日 2013-04-03 実験手法 X-RAY DIFFRACTION (1.581 Å) 主引用文献 The BEN domain is a novel sequence-specific DNA-binding domain conserved in neural transcriptional repressors. Genes Dev., 27, 2013
1ANV	ADENOVIRUS 5 DBP/URANYL FLUORIDE SOAK 分子名称: ADENOVIRUS SINGLE-STRANDED DNA-BINDING PROTEIN, URANYL (VI) ION, ZINC ION 著者 Kanellopoulos, P.N, Tsernoglou, D, Van Der Vliet, P.C, Tucker, P.A. 登録日 1996-03-14 公開日 1997-02-12 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Conformational change of the adenovirus DNA-binding protein induced by soaking crystals with K3UO2F5 solutions. Acta Crystallogr.,Sect.D, 52, 1996
1A5J	CHICKEN B-MYB DNA BINDING DOMAIN, REPEAT 2 AND REPEAT3, NMR, 32 STRUCTURES 分子名称: B-MYB 著者 Mcintosh, P.B, Carr, M.D, Wollborn, U, Frenkiel, T.A, Feeney, J, Mccormick, J.E, Klempnauer, K.H. 登録日 1998-02-16 公開日 1998-07-01 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Solution structure of the B-Myb DNA-binding domain: a possible role for conformational instability of the protein in DNA binding and control of gene expression. Biochemistry, 37, 1998
7Q3O	Structure of CDX1 bound to hydroxymethylated DNA 分子名称: Homeobox protein CDX-1, hydroxymethylated DNA (18-MER) 著者 Morgunova, E, Yin, Y, Popov, A, Taipale, J. 登録日 2021-10-28 公開日 2022-11-16 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2.78 Å) 主引用文献 Structure of CDX1 bound to hydroxymethylated DNA To Be Published

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