PDB: 243911 件ウェブページステータス検索Chemie searchBIRD

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9G09	Structure of human RNF213 bound to the secreted effector IpaH2.5 from Shigella flexneri 分子名称: ADENOSINE-5'-TRIPHOSPHATE, E3 ubiquitin-protein ligase IpaH2.5, E3 ubiquitin-protein ligase RNF213, ... 著者 Naydenova, K, Randow, F. 登録日 2024-07-07 公開日 2025-04-16 最終更新日 2025-10-01 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Shigella flexneri evades LPS ubiquitylation through IpaH1.4-mediated degradation of RNF213. Nat.Struct.Mol.Biol., 32, 2025
1M3S	Crystal structure of YckF from Bacillus subtilis 分子名称: Hypothetical protein yckf 著者 Sanishvili, R, Wu, R, Kim, D.E, Collart, F, Joachimiak, A, Midwest Center for Structural Genomics (MCSG) 登録日 2002-06-28 公開日 2003-01-21 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Crystal structure of Bacillus subtilis YckF: structural and functional evolution. J.Struct.Biol., 148, 2004
1MQ6	Crystal Structure of 3-chloro-N-[4-chloro-2-[[(5-chloro-2-pyridinyl)amino]carbonyl]-6-methoxyphenyl]-4-[[(4,5-dihydro-2-oxazolyl)methylamino]methyl]-2-thiophenecarboxamide Complexed with Human Factor Xa 分子名称: 3-CHLORO-N-[4-CHLORO-2-[[(5-CHLORO-2-PYRIDINYL)AMINO]CARBONYL]-6-METHOXYPHENYL]-4-[[(4,5-DIHYDRO-2-OXAZOLYL)METHYLAMINO]METHYL]-2-THIOPHENECARBOXAMIDE, CALCIUM ION, COAGULATION FACTOR X HEAVY CHAIN, ... 著者 Adler, M, Whitlow, M. 登録日 2002-09-13 公開日 2003-01-28 最終更新日 2024-10-30 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Crystal Structures of Two Potent Nonamidine Inhibitors Bound to Factor Xa Biochemistry, 41, 2002
7R62	Estrogen Receptor Alpha Ligand Binding Domain in Complex with a Desmethyl ICI164,384 Derivative 分子名称: 11-[3,17beta-dihydroxyestra-1,3,5(10)-trien-7beta-yl]-N-methyl-N-propylundecanamide, Estrogen receptor 著者 Diennet, M, El Ezzy, M, Thiombane, K, Cotnoir-White, D, Poupart, J, Gao, Z, Mendoza Sanchez, R, Marinier, A, Gleason, J, Greene, G.L, Mader, S.C, Fanning, S.W. 登録日 2021-06-22 公開日 2022-07-06 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Estrogen Receptor Alpha Ligand Binding Domain in Complex with a Desmethyl ICI164,384 Derivative To Be Published
9G79	Cryo-EM structure of Acetyl-coenzyme A synthetase (AcsA) dimer 分子名称: Acetyl-coenzyme A synthetase 著者 Zheng, L.J, Du, Y, Bange, G. 登録日 2024-07-20 公開日 2025-04-16 実験手法 ELECTRON MICROSCOPY (2.89 Å) 主引用文献 Regulation of acetyl-CoA biosynthesis via an intertwined acetyl-CoA synthetase/acetyltransferase complex. Nat Commun, 16, 2025
1M4H	Crystal Structure of Beta-secretase complexed with Inhibitor OM00-3 分子名称: Inhibitor OM00-3, beta-Secretase 著者 Hong, L, Turner, R.T, Koelsch, G, Ghosh, A.K, Tang, J. 登録日 2002-07-02 公開日 2002-08-28 最終更新日 2024-11-20 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Crystal Structure of Memapsin 2 (beta-Secretase) in Complex with Inhibitor OM00-3 Biochemistry, 41, 2002
1M55	Catalytic domain of the Adeno Associated Virus type 5 Rep protein 分子名称: CHLORIDE ION, Rep protein, ZINC ION 著者 Hickman, A.B, Ronning, D.R, Kotin, R.M, Dyda, F. 登録日 2002-07-08 公開日 2002-08-28 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (1.4 Å) 主引用文献 Structural unity among viral origin binding proteins: crystal structure of the nuclease domain of adeno-associated virus Rep. Mol.Cell, 10, 2002
9GA2	MtUvrA2 dimer empty 分子名称: UvrABC system protein A, ZINC ION 著者 Genta, M, Capelli, R, Ferrara, G, Rizzi, M, Rossi, F, Jeruzalmi, D, Bolognesi, M, Chaves-Sanjuan, A, Miggiano, R. 登録日 2024-07-26 公開日 2025-04-23 最終更新日 2025-07-02 実験手法 ELECTRON MICROSCOPY (4.9 Å) 主引用文献 Mechanistic understanding of UvrA damage detection and lesion hand-off to UvrB in Nucleotide Excision Repair. Nat Commun, 16, 2025
1MKP	CRYSTAL STRUCTURE OF PYST1 (MKP3) 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, CHLORIDE ION, PYST1 著者 Stewart, A.E, Dowd, S, Keyse, S, Mcdonald, N.Q. 登録日 1998-07-11 公開日 1999-07-22 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.35 Å) 主引用文献 Crystal structure of the MAPK phosphatase Pyst1 catalytic domain and implications for regulated activation. Nat.Struct.Biol., 6, 1999
1MJL	METHIONINE REPRESSOR MUTANT (Q44K) COMPLEX WITH THE COREPRESSOR SAM (S-ADENOSYL METHIONINE) FROM ESCHERICHIA COLI 分子名称: METHIONINE REPRESSOR PROTEIN METJ, S-ADENOSYLMETHIONINE 著者 Garvie, C.W, Phillips, S.E.V. 登録日 1998-01-26 公開日 1998-04-29 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Crystallographic studies of the methionine repressor-operator complex and the oc31 42kDa repressor Thesis, University of Leeds, 1997
7RP9	X-ray crystal structure of OXA-24/40 V130D in complex with imipenem 分子名称: (2R,4S)-2-[(1S,2R)-1-carboxy-2-hydroxypropyl]-4-[(2-{[(Z)-iminomethyl]amino}ethyl)sulfanyl]-3,4-dihydro-2H-pyrrole-5-ca rboxylic acid, BICARBONATE ION, Beta-lactamase, ... 著者 Powers, R.A, Mitchell, J.M, June, C.M. 登録日 2021-08-03 公開日 2022-07-06 最終更新日 2024-10-23 実験手法 X-RAY DIFFRACTION (1.94 Å) 主引用文献 Conformational flexibility in carbapenem hydrolysis drives substrate specificity of the class D carbapenemase OXA-24/40. J.Biol.Chem., 298, 2022
1M5C	X-RAY STRUCTURE OF THE GLUR2 LIGAND BINDING CORE (S1S2J) IN COMPLEX WITH Br-HIBO AT 1.65 A RESOLUTION 分子名称: (S)-2-AMINO-3-(4-BROMO-3-HYDROXY-ISOXAZOL-5-YL)PROPIONIC ACID, Glutamate receptor 2 著者 Hogner, A, Kastrup, J.S, Jin, R, Liljefors, T, Mayer, M.L, Egebjerg, J, Larsen, I.K, Gouaux, E. 登録日 2002-07-09 公開日 2002-09-18 最終更新日 2024-10-09 実験手法 X-RAY DIFFRACTION (1.65 Å) 主引用文献 Structural Basis for AMPA Receptor Activation and Ligand Selectivity: Crystal Structures of Five Agonist Complexes with the GluR2 Ligand-binding Core J.Mol.Biol., 322, 2002
9G5D	Assembly intermediate of human mitochondrial ribosome small subunit (State C) 分子名称: 12S mitochondrial rRNA, 12S rRNA N4-methylcytidine (m4C) methyltransferase, 28S ribosomal protein S10, ... 著者 Finke, A.F, Heinrichs, M, Aibara, S, Richter-Dennerlein, R, Hillen, H.S. 登録日 2024-07-16 公開日 2025-04-23 最終更新日 2025-04-30 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 Coupling of ribosome biogenesis and translation initiation in human mitochondria. Nat Commun, 16, 2025
9G6J	The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA 分子名称: (11R,12S)- Mefloquine, 18S rRNA, 25S rRNA, ... 著者 Kolosova, O, Zgadzay, Y, Jenner, L.B, Guskov, A, Yusupov, M. 登録日 2024-07-18 公開日 2025-04-23 最終更新日 2025-05-07 実験手法 ELECTRON MICROSCOPY (2.15 Å) 主引用文献 Mechanism of read-through enhancement by aminoglycosides and mefloquine. Proc.Natl.Acad.Sci.USA, 122, 2025
1M5L	Structure of wild-type and mutant internal loops from the SL-1 domain of the HIV-1 packaging signal 分子名称: modified HIV-1 packaging signal stem-loop 1 RNA 著者 Gallego, J, Greatorex, J, Varani, G, Lever, A. 登録日 2002-07-09 公開日 2002-09-18 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Structure and stability of wild-type and mutant RNA internal loops from the SL-1 domain of the HIV-1 packaging signal J.Mol.Biol., 322, 2002
7R57	Escherichia coli type II Asparaginase N24S mutant in its apo form 分子名称: L-asparaginase 2 著者 Maggi, M, Scotti, C. 登録日 2022-02-10 公開日 2022-09-14 最終更新日 2024-10-16 実験手法 X-RAY DIFFRACTION (1.4 Å) 主引用文献 Structural Aspects of E. coli Type II Asparaginase in Complex with Its Secondary Product L-Glutamate. Int J Mol Sci, 23, 2022
9GA4	MtUvrA2UvrB2 bound to damaged oligonucleotide 分子名称: DNA, UvrABC system protein A, UvrABC system protein B, ... 著者 Genta, M, Capelli, R, Ferrara, G, Rizzi, M, Rossi, F, Jeruzalmi, D, Bolognesi, M, Chaves-Sanjuan, A, Miggiano, R. 登録日 2024-07-26 公開日 2025-04-23 最終更新日 2025-07-02 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 Mechanistic understanding of UvrA damage detection and lesion hand-off to UvrB in Nucleotide Excision Repair. Nat Commun, 16, 2025
1M65	YCDX PROTEIN 分子名称: Hypothetical protein ycdX, SODIUM ION, SULFATE ION, ... 著者 Teplyakov, A, Obmolova, G, Khil, P.P, Camerini-Otero, R.D, Gilliland, G.L, Structure 2 Function Project (S2F) 登録日 2002-07-12 公開日 2003-04-22 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (1.57 Å) 主引用文献 Crystal structure of the Escherichia coli YcdX protein reveals a trinuclear zinc active site PROTEINS: STRUCT.,FUNCT.,GENET., 51, 2003
1LUX	NMR SOLUTION STRUCTURE OF THE ANTICODON OF YEAST TRNA-PHE WITH 3 MODIFICATIONS (OMC32 OMG34 M5C40) 分子名称: 5'-R(*CP*CP*AP*GP*AP*(OMC)P*UP*(OMG)P*AP*AP*GP*AP*UP*(5MC)P*UP*GP*G)-3' 著者 Stuart, J.W, Koshlap, K.M, Guenther, R.H, Agris, P.F. 登録日 2002-05-23 公開日 2003-09-09 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Naturally-occurring Modification Restricts the Anticodon Domain Conformational Space of tRNA(Phe). J.Mol.Biol., 334, 2003
9GOS	CryoEM structure of the native Chlamydomonas reinhardtii Flagella Membrane Glycoprotein 1B. 分子名称: Flagella Membrane Glycoprotein 1B 著者 Nievergelt, A.P, Hoepfner, L.M, Matrino, F, Scholz, M, Foster, H.E, Rodenfels, J, von Appen, A, Hippler, M, Pigino, G. 登録日 2024-09-06 公開日 2025-05-07 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 CryoEM structure of the native Chlamydomonas reinhardtii Flagella Membrane Glycoprotein 1B. To Be Published
9GK1	SSX structure of human cytochrome P450 3A4 at room temperature 分子名称: Cytochrome P450 3A4, PROTOPORPHYRIN IX CONTAINING FE 著者 Glerup, J, Branden, G, Uwangue, O. 登録日 2024-08-23 公開日 2025-05-07 実験手法 X-RAY DIFFRACTION (2.95 Å) 主引用文献 Microcrystallization and room-temperature serial crystallography structure of human cytochrome P450 3A4. Arch.Biochem.Biophys., 769, 2025
1LVA	Crystal structure of a C-terminal fragment of Moorella thermoacetica elongation factor SelB 分子名称: SULFATE ION, Selenocysteine-specific elongation factor, YTTRIUM ION 著者 Selmer, M, Su, X.-D. 登録日 2002-05-28 公開日 2002-08-21 最終更新日 2024-10-23 実験手法 X-RAY DIFFRACTION (2.12 Å) 主引用文献 Crystal structure of an mRNA-binding fragment of Moorella thermoacetica elongation factor SelB. EMBO J., 21, 2002
7R8P	Open form of SAOUHSC_02373 in complex with ADP, Mg2+ and Na+ 分子名称: ADENOSINE-5'-DIPHOSPHATE, ATP-grasp domain-containing protein, CHLORIDE ION, ... 著者 Pederick, J.L, Bruning, J.B. 登録日 2021-06-27 公開日 2022-09-14 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (1.37 Å) 主引用文献 Discovery of an ʟ-amino acid ligase implicated in Staphylococcal sulfur amino acid metabolism. J.Biol.Chem., 298, 2022
1LVJ	STRUCTURE OF TAR RNA COMPLEXED WITH A TAT-TAR INTERACTION NANOMOLAR INHIBITOR THAT WAS IDENTIFIED BY COMPUTATIONAL SCREENING 分子名称: 1-[10-(3-DIMETHYLAMINO-PROPYL)-10H-PHENOTHIAZIN-2-YL]-ETHANONE, HIV-1 Trans Activating Region RNA 著者 Du, Z, Lind, K.E, James, T.L. 登録日 2002-05-28 公開日 2002-12-11 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Structure of TAR RNA complexed with a Tat-TAR interaction nanomolar inhibitor that was identified by computational screening CHEM.BIOL., 9, 2002
9GLH	Crystal Structure of UFC1 T106S 分子名称: SULFATE ION, Ubiquitin-fold modifier-conjugating enzyme 1 著者 Kumar, M, Banerjee, S, Wiener, R. 登録日 2024-08-27 公開日 2025-05-07 実験手法 X-RAY DIFFRACTION (1.115 Å) 主引用文献 UFC1 reveals the multifactorial and plastic nature of oxyanion holes in E2 conjugating enzymes. Nat Commun, 16, 2025

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