PDB: 23765 件ウェブページステータス検索Chemie searchBIRD

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9G37	Cryo-EM structure of IrtAB 3xHtoA mutant in outward-occluded state in presence of mycobactin under turnover conditions in LMNG 分子名称: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Mycobactin import ATP-binding/permease protein IrtA, ... 著者 Gonda, I, Seeger, M.A. 登録日 2024-07-11 公開日 2024-12-18 最終更新日 2025-02-12 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 The mycobacterial ABC transporter IrtAB employs a membrane-facing crevice for siderophore-mediated iron uptake. Nat Commun, 16, 2025
9G2X	Cryo-EM structure of IrtAB in outward-occluded state in presence of mycobactin under turnover conditions in LMNG 分子名称: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Mycobactin import ATP-binding/permease protein IrtA, ... 著者 Gonda, I, Seeger, M.A. 登録日 2024-07-11 公開日 2024-12-18 最終更新日 2025-02-12 実験手法 ELECTRON MICROSCOPY (2.85 Å) 主引用文献 The mycobacterial ABC transporter IrtAB employs a membrane-facing crevice for siderophore-mediated iron uptake. Nat Commun, 16, 2025
9G36	Cryo-EM structure of IrtAB 3xHtoA mutant in inward-facing state in presence of mycobactin under turnover conditions in LMNG 分子名称: ADENOSINE-5'-DIPHOSPHATE, Mycobactin import ATP-binding/permease protein IrtA, Mycobactin import ATP-binding/permease protein IrtB 著者 Gonda, I, Seeger, M.A. 登録日 2024-07-11 公開日 2024-12-18 最終更新日 2025-02-12 実験手法 ELECTRON MICROSCOPY (3.21 Å) 主引用文献 The mycobacterial ABC transporter IrtAB employs a membrane-facing crevice for siderophore-mediated iron uptake. Nat Commun, 16, 2025
9G2V	Cryo-EM structure of IrtAB in inward-facing state in presence of mycobactin under turnover conditions in LMNG 分子名称: ADENOSINE-5'-DIPHOSPHATE, Mycobactin import ATP-binding/permease protein IrtA, Mycobactin import ATP-binding/permease protein IrtB, ... 著者 Gonda, I, Seeger, M.A. 登録日 2024-07-11 公開日 2024-12-18 最終更新日 2025-02-12 実験手法 ELECTRON MICROSCOPY (3.35 Å) 主引用文献 The mycobacterial ABC transporter IrtAB employs a membrane-facing crevice for siderophore-mediated iron uptake. Nat Commun, 16, 2025
5FOI	Crystal structure of mycinamicin VIII C21 methyl hydroxylase MycCI from Micromonospora griseorubida bound to mycinamicin VIII 分子名称: GLYCEROL, MYCINAMICIN VIII C21 METHYL HYDROXYLASE, Mycinamicin VIII, ... 著者 Demars, M, Sheng, F, Podust, L.M, Sherman, D.H. 登録日 2015-11-22 公開日 2016-07-27 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.21 Å) 主引用文献 Biochemical and Structural Characterization of Mycci, a Versatile P450 Biocatalyst from the Mycinamicin Biosynthetic Pathway. Acs Chem.Biol., 11, 2016
5OBU	Mycoplasma genitalium DnaK deletion mutant lacking SBDalpha in complex with AMPPNP. 分子名称: Chaperone protein DnaK, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ... 著者 Adell, M, Calisto, B, Fita, I, Martinelli, L. 登録日 2017-06-29 公開日 2018-05-09 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 The nucleotide-bound/substrate-bound conformation of the Mycoplasma genitalium DnaK chaperone. Protein Sci., 27, 2018
5OBY	Mycoplasma genitalium DnaK-NBD in complex with AMP-PNP 分子名称: Chaperone protein DnaK, GLYCEROL, MAGNESIUM ION, ... 著者 Adell, M, Calisto, B, Fita, I, Martinelli, L. 登録日 2017-06-29 公開日 2018-05-09 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.3 Å) 主引用文献 The nucleotide-bound/substrate-bound conformation of the Mycoplasma genitalium DnaK chaperone. Protein Sci., 27, 2018
5OBV	Mycoplasma genitalium DnaK deletion mutant lacking SBDalpha in complex with ADP and Pi. 分子名称: ADENOSINE-5'-DIPHOSPHATE, Chaperone protein DnaK, PHOSPHATE ION 著者 Adell, M, Calisto, B, Fita, I, Martinelli, L. 登録日 2017-06-29 公開日 2018-05-09 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.49 Å) 主引用文献 The nucleotide-bound/substrate-bound conformation of the Mycoplasma genitalium DnaK chaperone. Protein Sci., 27, 2018
4WF1	Crystal structure of the E. coli ribosome bound to negamycin. 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Olivier, N.B, Altman, R.B, Noeske, J, Basarab, G.S, Code, E, Ferguson, A.D, Gao, N, Huang, J, Juette, M.F, Livchak, S, Miller, M.D, Prince, D.B, Cate, J.H.D, Buurman, E.T, Blanchard, S.C. 登録日 2014-09-11 公開日 2014-11-05 最終更新日 2024-10-16 実験手法 X-RAY DIFFRACTION (3.09 Å) 主引用文献 Negamycin induces translational stalling and miscoding by binding to the small subunit head domain of the Escherichia coli ribosome. Proc.Natl.Acad.Sci.USA, 111, 2014
5OBW	Mycoplasma genitalium DnaK-NBD in complex with ATP 分子名称: ADENOSINE-5'-DIPHOSPHATE, Chaperone protein DnaK, GLYCEROL, ... 著者 Adell, M, Calisto, B, Fita, I, Martinelli, L. 登録日 2017-06-29 公開日 2018-05-09 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.4 Å) 主引用文献 The nucleotide-bound/substrate-bound conformation of the Mycoplasma genitalium DnaK chaperone. Protein Sci., 27, 2018
5OBX	Mycoplasma genitalium DnaK-NBD 分子名称: Chaperone protein DnaK, GLYCEROL, SULFATE ION, ... 著者 Adell, M, Calisto, B, Fita, I, Martinelli, L. 登録日 2017-06-29 公開日 2018-05-09 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.78 Å) 主引用文献 The nucleotide-bound/substrate-bound conformation of the Mycoplasma genitalium DnaK chaperone. Protein Sci., 27, 2018
2NLR	STREPTOMYCES LIVIDANS ENDOGLUCANASE (EC: 3.2.1.4) COMPLEX WITH MODIFIED GLUCOSE TRIMER 分子名称: PROTEIN (ENDOGLUCANASE (E.C.3.2.1.4)), beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-2-deoxy-2-fluoro-beta-D-glucopyranose 著者 Sulzenbacher, G, Dupont, C, Davies, G.J. 登録日 1998-11-02 公開日 1999-11-10 最終更新日 2024-10-30 実験手法 X-RAY DIFFRACTION (1.2 Å) 主引用文献 The crystal structure of a 2-fluorocellotriosyl complex of the Streptomyces lividans endoglucanase CelB2 at 1.2 A resolution. Biochemistry, 38, 1999
5CJ3	Crystal structure of the zorbamycin binding protein (ZbmA) from Streptomyces flavoviridis with zorbamycin 分子名称: CHLORIDE ION, COPPER (II) ION, Zbm binding protein, ... 著者 Chang, C, Bigelow, L, Clancy, S, Babnigg, G, Joachimiak, A, Midwest Center for Structural Genomics (MCSG), Rudolf, J.D, Ma, M, Chang, C.-Y, Lohman, J.R, Yang, D, Shen, B, Enzyme Discovery for Natural Product Biosynthesis, Enzyme Discovery for Natural Product Biosynthesis (NatPro) 登録日 2015-07-13 公開日 2015-07-22 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.6499 Å) 主引用文献 Crystal Structure of the Zorbamycin-Binding Protein ZbmA, the Primary Self-Resistance Element in Streptomyces flavoviridis ATCC21892. Biochemistry, 54, 2015
2VZM	Crystal structure of the narbomycin-bound PikC D50N mutant 分子名称: CYTOCHROME P450 MONOOXYGENASE, NARBOMYCIN, PROTOPORPHYRIN IX CONTAINING FE 著者 Li, S, Sherman, D.H, Podust, L.M. 登録日 2008-08-01 公開日 2008-08-12 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 Analysis of Transient and Catalytic Desosamine Binding Pockets in Cytochrome P450 Pikc from Streptomyces Venezuelae. J.Biol.Chem., 284, 2009
6I0I	Structure of the streptomyces subtilisin and TAMP inhibitor (SSTI) 分子名称: Transglutaminase-activating metalloprotease inhibitor 著者 Schmelz, S, Juettner, N.E, Fuchsbauer, H.L, Scrima, A. 登録日 2018-10-26 公開日 2019-09-04 最終更新日 2024-10-23 実験手法 X-RAY DIFFRACTION (1.448 Å) 主引用文献 The N-terminal peptide of the transglutaminase-activating metalloprotease inhibitor from Streptomyces mobaraensis accommodates both inhibition and glutamine cross-linking sites. Febs J., 287, 2020
4DCZ	Crystal structure of a domain from a mycoplasma genitalium terminal organelle protein 分子名称: DnaJ-like protein MG200 著者 Calisto, B.M, Martinelli, L, Fita, I. 登録日 2012-01-18 公開日 2013-01-09 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 The EAGR box structure: a motif involved in mycoplasma motility. Mol.Microbiol., 86, 2012
1I75	CRYSTAL STRUCTURE OF CYCLODEXTRIN GLUCANOTRANSFERASE FROM ALKALOPHILIC BACILLUS SP.#1011 COMPLEXED WITH 1-DEOXYNOJIRIMYCIN 分子名称: 1-DEOXYNOJIRIMYCIN, CALCIUM ION, CYCLODEXTRIN GLUCANOTRANSFERASE 著者 Kanai, R, Haga, K, Yamane, K, Harata, K. 登録日 2001-03-08 公開日 2001-04-11 最終更新日 2024-11-13 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Crystal structure of cyclodextrin glucanotransferase from alkalophilic Bacillus sp. 1011 complexed with 1-deoxynojirimycin at 2.0 A resolution. J.Biochem.(Tokyo), 129, 2001
1QD8	COMPLEX OF VANCOMYCIN WITH N-ACETYL GLYCINE 分子名称: ACETYLAMINO-ACETIC ACID, CHLORIDE ION, VANCOMYCIN, ... 著者 Loll, P.J, Kaplan, J, Selinsky, B, Axelsen, P.H. 登録日 1999-07-15 公開日 1999-08-16 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (1 Å) 主引用文献 Vancomycin Binding to Low-Affinity Ligands: Delineating a Minimum Set of Interactions Necessary for High-Affinity Binding. J.Med.Chem., 42, 1999
2OE5	1.5 A X-ray crystal structure of Apramycin complex with RNA fragment GGCGUCGCUAGUACCG/GGUACUAAAAGUCGCCC containing the human ribosomal decoding A site: RNA construct with 3'-overhang 分子名称: APRAMYCIN, MAGNESIUM ION, RNA (5'-R(*GP*GP*CP*GP*UP*CP*GP*CP*UP*AP*GP*UP*AP*CP*CP*G)-3'), ... 著者 Hermann, T, Tereshko, V, Skripkin, E, Patel, D.J. 登録日 2006-12-28 公開日 2007-02-13 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (1.51 Å) 主引用文献 Apramycin recognition by the human ribosomal decoding site. Blood Cells Mol.Dis., 38, 2007
2OE8	1.8 A X-ray crystal structure of Apramycin complex with RNA fragment GGGCGUCGCUAGUACC/CGGUACUAAAAGUCGCC containing the human ribosomal decoding A site: RNA construct with 5'-overhang 分子名称: APRAMYCIN, RNA (5'-R(*CP*GP*GP*UP*AP*CP*UP*AP*AP*AP*AP*GP*UP*CP*GP*CP*C)-3'), RNA (5'-R(*GP*GP*GP*CP*GP*UP*CP*GP*CP*UP*AP*GP*UP*AP*CP*C)-3') 著者 Hermann, T, Tereshko, V, Skripkin, E, Patel, D.J. 登録日 2006-12-28 公開日 2007-02-13 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Apramycin recognition by the human ribosomal decoding site. Blood Cells Mol.Dis., 38, 2007
7BWM	Cryo-EM structure of the human pathogen Mycoplasma pneumoniae P1 分子名称: Adhesin P1 著者 Kawamoto, A, Kenri, T, Namba, K, Miyata, M. 登録日 2020-04-15 公開日 2020-10-28 最終更新日 2024-03-27 実験手法 ELECTRON MICROSCOPY (2.9 Å) 主引用文献 Immunodominant proteins P1 and P40/P90 from human pathogen Mycoplasma pneumoniae. Nat Commun, 11, 2020
6RC9	P1 Mycoplasma pneumoniae 分子名称: Adhesin P1 著者 Vizarraga, D, Aparicio, D, Illanes, R, Fita, I. 登録日 2019-04-11 公開日 2020-11-04 最終更新日 2024-05-15 実験手法 X-RAY DIFFRACTION (1.94 Å) 主引用文献 Immunodominant proteins P1 and P40/P90 from human pathogen Mycoplasma pneumoniae. Nat Commun, 11, 2020
6S3U	Adhesin P140 from Mycoplasma Genitalium 分子名称: Adhesin P1 著者 Fita, I, Aparicio, D. 登録日 2019-06-26 公開日 2020-06-24 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (3.24 Å) 主引用文献 Structure and mechanism of the Nap adhesion complex from the human pathogen Mycoplasma genitalium. Nat Commun, 11, 2020
6RJ1	N-Domain P40/P90 Mycoplasma pneumoniae 分子名称: Mgp-operon protein 3 著者 Vizarraga, D, Aparicio, D, Illanes, R, Fita, I. 登録日 2019-04-25 公開日 2020-11-04 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (2.65 Å) 主引用文献 Immunodominant proteins P1 and P40/P90 from human pathogen Mycoplasma pneumoniae. Nat Commun, 11, 2020
6TLZ	N-Domain P40/P90 Mycoplasma pneumoniae complexed with 3'SL 分子名称: Mgp-operon protein 3, N-acetyl-alpha-neuraminic acid, N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose, ... 著者 Vizarraga, D, Aparicio, D, Illanes, R, Fita, I, Perez-Luque, R, Martin, J. 登録日 2019-12-03 公開日 2020-11-04 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Immunodominant proteins P1 and P40/P90 from human pathogen Mycoplasma pneumoniae. Nat Commun, 11, 2020

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