Loading
PDBj
メニューPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

7UWC
DownloadVisualize
BU of 7uwc by Molmil
Citrus V-ATPase State 2, H in contact with subunit a
分子名称: V-type proton ATPase catalytic subunit A, V-type proton ATPase subunit AP1 fragment, V-type proton ATPase subunit AP2 fragment, ...
著者Keon, K.A, Abdelaziz, R.A, Schulze, W.X, Schumacher, K, Rubinstein, J.L.
登録日2022-05-03
公開日2022-07-06
最終更新日2024-01-17
実験手法ELECTRON MICROSCOPY (4 Å)
主引用文献Structure of V-ATPase from citrus fruit.
Structure, 30, 2022
7KHR
DownloadVisualize
BU of 7khr by Molmil
Cryo-EM structure of bafilomycin A1-bound intact V-ATPase from bovine brain
分子名称: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, (5R)-2,4-dideoxy-1-C-{(2S,3R,4S)-3-hydroxy-4-[(2R,3S,4E,6E,9R,10S,11R,12E,14Z)-10-hydroxy-3,15-dimethoxy-7,9,11,13-tetramethyl-16-oxo-1-oxacyclohexadeca-4,6,12,14-tetraen-2-yl]pentan-2-yl}-4-methyl-5-propan-2-yl-alpha-D-threo-pentopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Wang, R, Li, X.
登録日2020-10-21
公開日2021-03-17
最終更新日2024-11-13
実験手法ELECTRON MICROSCOPY (3.62 Å)
主引用文献Molecular basis of V-ATPase inhibition by bafilomycin A1.
Nat Commun, 12, 2021
1D8S
DownloadVisualize
BU of 1d8s by Molmil
ESCHERICHIA COLI F1 ATPASE
分子名称: F1 ATPASE (ALPHA SUBUNIT), F1 ATPASE (BETA SUBUNIT), F1 ATPASE (GAMMA SUBUNIT)
著者Hausrath, A.C, Gruber, G, Matthews, B.W, Capaldi, R.A.
登録日1999-10-25
公開日1999-12-03
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (4.4 Å)
主引用文献Structural features of the gamma subunit of the Escherichia coli F(1) ATPase revealed by a 4.4-A resolution map obtained by x-ray crystallography.
Proc.Natl.Acad.Sci.USA, 96, 1999
7RMK
DownloadVisualize
BU of 7rmk by Molmil
Yeast CTP Synthase (Ura7) Bundle bound to substrates at low pH
分子名称: ADENOSINE-5'-TRIPHOSPHATE, CTP synthase, URIDINE 5'-TRIPHOSPHATE
著者Hansen, J.M, Lynch, E.M, Farrell, D.P, DiMaio, F, Quispe, J, Kollman, J.M.
登録日2021-07-27
公開日2021-11-24
最終更新日2024-06-05
実験手法ELECTRON MICROSCOPY (6.6 Å)
主引用文献Cryo-EM structures of CTP synthase filaments reveal mechanism of pH-sensitive assembly during budding yeast starvation.
Elife, 10, 2021
7RNR
DownloadVisualize
BU of 7rnr by Molmil
Yeast CTP Synthase (Ura8) Bundle Bound to Substrates at Low pH
分子名称: ADENOSINE-5'-TRIPHOSPHATE, CTP synthase, MAGNESIUM ION, ...
著者Hansen, J.M, Lynch, E.M, Farrell, D.P, DiMaio, F, Quispe, J, Kollman, J.M.
登録日2021-07-29
公開日2021-11-24
最終更新日2024-06-05
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Cryo-EM structures of CTP synthase filaments reveal mechanism of pH-sensitive assembly during budding yeast starvation.
Elife, 10, 2021
5VOY
DownloadVisualize
BU of 5voy by Molmil
Yeast V-ATPase in complex with Legionella pneumophila effector SidK (rotational state 2)
分子名称: V-type proton ATPase catalytic subunit A,V-type proton ATPase catalytic subunit A, V-type proton ATPase subunit B, V-type proton ATPase subunit C, ...
著者Zhao, J.
登録日2017-05-03
公開日2017-06-21
最終更新日2024-03-13
実験手法ELECTRON MICROSCOPY (7.9 Å)
主引用文献Molecular basis for the binding and modulation of V-ATPase by a bacterial effector protein.
PLoS Pathog., 13, 2017
5VOZ
DownloadVisualize
BU of 5voz by Molmil
Yeast V-ATPase in complex with Legionella pneumophila effector SidK (rotational state 3)
分子名称: Uncharacterized protein, V-type proton ATPase catalytic subunit A,V-type proton ATPase catalytic subunit A, V-type proton ATPase subunit B, ...
著者Zhao, J.
登録日2017-05-03
公開日2017-06-28
最終更新日2024-03-13
実験手法ELECTRON MICROSCOPY (7.6 Å)
主引用文献Molecular basis for the binding and modulation of V-ATPase by a bacterial effector protein.
PLoS Pathog., 13, 2017
4WKY
DownloadVisualize
BU of 4wky by Molmil
Streptomcyes albus JA3453 oxazolomycin ketosynthase domain OzmN KS2
分子名称: 1,2-ETHANEDIOL, Beta-ketoacyl synthase, GLYCEROL, ...
著者Cuff, M.E, Mack, J.C, Endres, M, Babnigg, G, Bingman, C.A, Yennamalli, R, Lohman, J.R, Ma, M, Shen, B, Phillips Jr, G.N, Joachimiak, A, Midwest Center for Structural Genomics (MCSG), Enzyme Discovery for Natural Product Biosynthesis (NatPro)
登録日2014-10-03
公開日2014-10-29
最終更新日2024-11-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structural and evolutionary relationships of "AT-less" type I polyketide synthase ketosynthases.
Proc.Natl.Acad.Sci.USA, 112, 2015
5VOX
DownloadVisualize
BU of 5vox by Molmil
Yeast V-ATPase in complex with Legionella pneumophila effector SidK (rotational state 1)
分子名称: V-type proton ATPase catalytic subunit A,V-type proton ATPase catalytic subunit A, V-type proton ATPase subunit B, V-type proton ATPase subunit C, ...
著者Zhao, J.
登録日2017-05-03
公開日2017-06-21
最終更新日2024-03-13
実験手法ELECTRON MICROSCOPY (6.8 Å)
主引用文献Molecular basis for the binding and modulation of V-ATPase by a bacterial effector protein.
PLoS Pathog., 13, 2017
2HS0
DownloadVisualize
BU of 2hs0 by Molmil
T. maritima PurL complexed with ATP
分子名称: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Phosphoribosylformylglycinamidine synthase II
著者Ealick, S.E, Morar, M.
登録日2006-07-20
公開日2007-01-09
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.52 Å)
主引用文献Complexed Structures of Formylglycinamide Ribonucleotide Amidotransferase from Thermotoga maritima Describe a Novel ATP Binding Protein Superfamily
Biochemistry, 45, 2006
3MWD
DownloadVisualize
BU of 3mwd by Molmil
Truncated Human ATP-Citrate Lyase with Citrate Bound
分子名称: ATP-citrate synthase, CITRIC ACID
著者Fraser, M.E, Sun, T.
登録日2010-05-05
公開日2010-06-16
最終更新日2024-11-20
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Identification of the citrate-binding site of human ATP-citrate lyase using X-ray crystallography.
J.Biol.Chem., 285, 2010
3MWE
DownloadVisualize
BU of 3mwe by Molmil
Truncated Human ATP-Citrate Lyase with Tartrate Bound
分子名称: ATP-citrate synthase, L(+)-TARTARIC ACID, MAGNESIUM ION
著者Fraser, M.E, Sun, T.
登録日2010-05-05
公開日2010-06-16
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Identification of the citrate-binding site of human ATP-citrate lyase using X-ray crystallography.
J.Biol.Chem., 285, 2010
8FV7
DownloadVisualize
BU of 8fv7 by Molmil
E coli. CTP synthase in complex with dF-dCTP + ATP
分子名称: 2'-deoxy-2',2'-difluorocytidine 5'-(tetrahydrogen triphosphate), ADENOSINE-5'-TRIPHOSPHATE, CTP synthase, ...
著者Holyoak, T, McLeod, M.J, Tran, N.
登録日2023-01-18
公開日2023-05-24
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.08 Å)
主引用文献A metal-dependent conformational change provides a structural basis for the inhibition of CTP synthase by gemcitabine-5'-triphosphate.
Protein Sci., 32, 2023
5I1M
DownloadVisualize
BU of 5i1m by Molmil
Yeast V-ATPase average of densities, a subunit segment
分子名称: V-type proton ATPase subunit a, vacuolar isoform
著者Schep, D.G, Zhao, J, Rubinstein, J.L.
登録日2016-02-05
公開日2016-03-09
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (7 Å)
主引用文献Models for the a subunits of the Thermus thermophilus V/A-ATPase and Saccharomyces cerevisiae V-ATPase enzymes by cryo-EM and evolutionary covariance.
Proc.Natl.Acad.Sci.USA, 113, 2016
4DLK
DownloadVisualize
BU of 4dlk by Molmil
Crystal Structure of ATP-Ca++ complex of purK: N5-carboxyaminoimidazole ribonucleotide synthetase
分子名称: ADENOSINE-5'-TRIPHOSPHATE, CALCIUM ION, PHOSPHATE ION, ...
著者Fung, L.W, Tuntland, M.L, Santarsiero, B.D, Johnson, M.E.
登録日2012-02-06
公開日2013-02-06
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.02 Å)
主引用文献Elucidation of the bicarbonate binding site and insights into the carboxylation mechanism of (N(5))-carboxyaminoimidazole ribonucleotide synthase (PurK) from Bacillus anthracis.
Acta Crystallogr.,Sect.D, 70, 2014
3V4S
DownloadVisualize
BU of 3v4s by Molmil
Crystal Structure of ADP-ATP complex of purK: N5-carboxyaminoimidazole ribonucleotide synthetase
分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, CARBONATE ION, ...
著者Fung, L.W, Tuntland, M.L, Santarsiero, B.D, Johnson, M.E.
登録日2011-12-15
公開日2013-02-13
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.02 Å)
主引用文献Elucidation of the bicarbonate binding site and insights into the carboxylation mechanism of (N(5))-carboxyaminoimidazole ribonucleotide synthase (PurK) from Bacillus anthracis.
Acta Crystallogr.,Sect.D, 70, 2014
5BW9
DownloadVisualize
BU of 5bw9 by Molmil
Crystal Structure of Yeast V1-ATPase in the Autoinhibited Form
分子名称: V-type proton ATPase catalytic subunit A, V-type proton ATPase subunit B, V-type proton ATPase subunit D, ...
著者Oot, R.A, Kane, P.M, Berry, E.A, Wilkens, S.
登録日2015-06-06
公開日2016-06-08
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (7 Å)
主引用文献Crystal structure of yeast V1-ATPase in the autoinhibited state.
Embo J., 35, 2016
4K97
DownloadVisualize
BU of 4k97 by Molmil
Structure of Ternary Complex of cGAS with dsDNA and Bound ATP
分子名称: ADENOSINE-5'-TRIPHOSPHATE, Cyclic GMP-AMP synthase, DNA-F, ...
著者Gao, P, Wu, Y, Patel, D.J.
登録日2013-04-19
公開日2013-05-15
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.41 Å)
主引用文献Cyclic [G(2',5')pA(3',5')p] is the metazoan second messenger produced by DNA-activated cyclic GMP-AMP synthase.
Cell(Cambridge,Mass.), 153, 2013
4RND
DownloadVisualize
BU of 4rnd by Molmil
Crystal Structure of the subunit DF-assembly of the eukaryotic V-ATPase.
分子名称: GLYCEROL, V-type proton ATPase subunit D, V-type proton ATPase subunit F
著者Balakrishna, A.M, Basak, S, Gruber, G.
登録日2014-10-24
公開日2014-12-10
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (3.18 Å)
主引用文献Crystal Structure of Subunits D and F in Complex Gives Insight into Energy Transmission of the Eukaryotic V-ATPase from Saccharomyces cerevisiae.
J.Biol.Chem., 290, 2015
4QYR
DownloadVisualize
BU of 4qyr by Molmil
Streptomyces platensis isomigrastatin ketosynthase domain MgsE KS3
分子名称: ACETIC ACID, AT-less polyketide synthase, CHLORIDE ION, ...
著者Kim, Y, Li, H, Endres, M, Babnigg, J, Bingman, C.A, Yennamalli, R, Lohman, J.R, Ma, M, Shen, B, Phillips Jr, G.N, Joachimiak, A, Midwest Center for Structural Genomics (MCSG), Enzyme Discovery for Natural Product Biosynthesis (NatPro)
登録日2014-07-25
公開日2014-08-20
最終更新日2024-11-27
実験手法X-RAY DIFFRACTION (2.902 Å)
主引用文献Structural and evolutionary relationships of "AT-less" type I polyketide synthase ketosynthases.
Proc.Natl.Acad.Sci.USA, 112, 2015
5U03
DownloadVisualize
BU of 5u03 by Molmil
Cryo-EM structure of the human CTP synthase filament
分子名称: ADENOSINE-5'-TRIPHOSPHATE, CTP synthase 1, URIDINE 5'-TRIPHOSPHATE
著者Lynch, E.M, Kollman, J.M.
登録日2016-11-22
公開日2017-04-26
最終更新日2024-10-23
実験手法ELECTRON MICROSCOPY (6.1 Å)
主引用文献Human CTP synthase filament structure reveals the active enzyme conformation.
Nat. Struct. Mol. Biol., 24, 2017
2CYD
DownloadVisualize
BU of 2cyd by Molmil
Crystal structure of Lithium bound rotor ring of the V-ATPase from Enterococcus hirae
分子名称: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, LITHIUM ION, UNDECYL-MALTOSIDE, ...
著者Murata, T, Yamato, I, Kakinuma, Y, Shirouzu, M, Walker, J.E, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-07-06
公開日2006-06-27
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Crystal structure of Lithium bound rotor ring of the V-ATPase from Enterococcus hirae
To be Published
4TKT
DownloadVisualize
BU of 4tkt by Molmil
Streptomyces platensis isomigrastatin ketosynthase domain MgsF KS6
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, AT-less polyketide synthase, CHLORIDE ION, ...
著者Chang, C, Li, H, Endres, M, Bingman, C.A, Yennamalli, R, Lohman, J.R, Ma, M, Shen, B, Phillips Jr, G.N, Joachimiak, A, Midwest Center for Structural Genomics (MCSG), Enzyme Discovery for Natural Product Biosynthesis (NatPro)
登録日2014-05-27
公開日2014-06-11
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (2.4289 Å)
主引用文献Structural and evolutionary relationships of "AT-less" type I polyketide synthase ketosynthases.
Proc.Natl.Acad.Sci.USA, 112, 2015
5BP8
DownloadVisualize
BU of 5bp8 by Molmil
ent-Copalyl diphosphate synthase from Streptomyces platensis
分子名称: 1,2-ETHANEDIOL, Ent-copalyl diphosphate synthase, SULFATE ION
著者Osipiuk, J, Hatzos-Skintges, C, Endres, M, Babnigg, G, Rudolf, J.D, Ma, M, Chang, C.-Y, Shen, B, Joachimiak, A, Enzyme Discovery for Natural Product Biosynthesis (NatPro), Midwest Center for Structural Genomics (MCSG)
登録日2015-05-27
公開日2015-06-10
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structure of the ent-Copalyl Diphosphate Synthase PtmT2 from Streptomyces platensis CB00739, a Bacterial Type II Diterpene Synthase.
J.Am.Chem.Soc., 138, 2016
4ZDN
DownloadVisualize
BU of 4zdn by Molmil
Streptomyces platensis isomigrastatin ketosynthase domain MgsF KS4
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, AT-less polyketide synthase, CHLORIDE ION
著者Chang, C, Li, H, Endres, M, Bingman, C.A, Yennamalli, R, Lohman, J.R, Ma, M, Shen, B, Phillips Jr, G.N, Joachimiak, A, Midwest Center for Structural Genomics (MCSG), Enzyme Discovery for Natural Product Biosynthesis (NatPro)
登録日2015-04-17
公開日2015-05-13
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (2.509 Å)
主引用文献Structural and evolutionary relationships of "AT-less" type I polyketide synthase ketosynthases.
Proc.Natl.Acad.Sci.USA, 112, 2015

238582

件を2025-07-09に公開中

PDB statisticsPDBj update infoContact PDBjnumon