2EVI
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![BU of 2evi by Molmil](/molmil-images/mine/2evi) | Structure of a Ndt80-DNA complex (MSE mutant mA8T) | 分子名称: | 5'-D(*AP*GP*TP*TP*AP*TP*TP*GP*TP*GP*TP*CP*GP*C)-3', 5'-D(*TP*GP*CP*GP*AP*CP*AP*CP*AP*AP*TP*AP*AP*C)-3', NDT80 protein | 著者 | Lamoureux, J.S, Glover, J.N. | 登録日 | 2005-10-31 | 公開日 | 2006-03-21 | 最終更新日 | 2023-08-23 | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | 主引用文献 | Principles of Protein-DNA Recognition Revealed in the Structural Analysis of Ndt80-MSE DNA Complexes. Structure, 14, 2006
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2EVJ
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![BU of 2evj by Molmil](/molmil-images/mine/2evj) | Structure of an Ndt80-DNA complex (MSE mutant mA9C) | 分子名称: | 5'-D(*AP*GP*TP*GP*TP*TP*TP*GP*TP*GP*TP*CP*GP*C)-3', 5'-D(*TP*GP*CP*GP*AP*CP*AP*CP*AP*AP*AP*CP*AP*C)-3', NDT80 protein | 著者 | Lamoureux, J.S, Glover, J.N. | 登録日 | 2005-10-31 | 公開日 | 2006-03-21 | 最終更新日 | 2023-08-23 | 実験手法 | X-RAY DIFFRACTION (1.89 Å) | 主引用文献 | Principles of Protein-DNA Recognition Revealed in the Structural Analysis of Ndt80-MSE DNA Complexes. Structure, 14, 2006
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2D1V
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![BU of 2d1v by Molmil](/molmil-images/mine/2d1v) | Crystal structure of DNA-binding domain of Bacillus subtilis YycF | 分子名称: | Transcriptional regulatory protein yycF | 著者 | Okajima, T, Okada, A, Watanabe, T, Yamamoto, K, Tanizawa, K, Utsumi, R. | 登録日 | 2005-09-01 | 公開日 | 2006-09-12 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (2.4 Å) | 主引用文献 | Response regulator YycF essential for bacterial growth: X-ray crystal structure of the DNA-binding domain and its PhoB-like DNA recognition motif Febs Lett., 582, 2008
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2EVG
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![BU of 2evg by Molmil](/molmil-images/mine/2evg) | Structure of a Ndt80-DNA complex (MSE mutant mA7T) | 分子名称: | 5'-D(*AP*GP*TP*TP*TP*AP*TP*GP*TP*GP*TP*CP*GP*C)-3', 5'-D(*TP*GP*CP*GP*AP*CP*AP*CP*AP*TP*AP*AP*AP*C)-3', NDT80 protein | 著者 | Lamoureux, J.S, Glover, J.N. | 登録日 | 2005-10-31 | 公開日 | 2006-03-21 | 最終更新日 | 2023-08-23 | 実験手法 | X-RAY DIFFRACTION (1.55 Å) | 主引用文献 | Principles of Protein-DNA Recognition Revealed in the Structural Analysis of Ndt80-MSE DNA Complexes. Structure, 14, 2006
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2EVF
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![BU of 2evf by Molmil](/molmil-images/mine/2evf) | Structure of a Ndt80-DNA complex (MSE mutant mA6T) | 分子名称: | 5'-D(*AP*GP*TP*TP*TP*TP*AP*GP*TP*GP*TP*CP*GP*C)-3', 5'-D(*TP*GP*CP*GP*AP*CP*AP*CP*TP*AP*AP*AP*AP*C)-3', NDT80 protein | 著者 | Lamoureux, J.S, Glover, J.N. | 登録日 | 2005-10-31 | 公開日 | 2006-03-21 | 最終更新日 | 2023-08-23 | 実験手法 | X-RAY DIFFRACTION (1.56 Å) | 主引用文献 | Principles of Protein-DNA Recognition Revealed in the Structural Analysis of Ndt80-MSE DNA Complexes. Structure, 14, 2006
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6X71
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![BU of 6x71 by Molmil](/molmil-images/mine/6x71) | |
2J6T
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![BU of 2j6t by Molmil](/molmil-images/mine/2j6t) | Ternary complex of Sulfolobus solfataricus Dpo4 DNA polymerase, O6- methylguanine modified DNA, and dATP. | 分子名称: | 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*C)-3', 5'-D(*TP*CP*AP*TP*XP*GP*AP*AP*TP*CP *CP*TP*TP*CP*CP*CP*CP*C)-3', ... | 著者 | Irimia, A, Eoff, R.L, Guengerich, F.P, Egli, M. | 登録日 | 2006-10-04 | 公開日 | 2006-11-22 | 最終更新日 | 2023-12-13 | 実験手法 | X-RAY DIFFRACTION (2.6 Å) | 主引用文献 | Sulfolobus Solfataricus DNA Polymerase Dpo4 is Partially Inhibited by "Wobble" Pairing between O6- Methylguanine and Cytosine, But Accurate Bypass is Preferred. J.Biol.Chem., 282, 2007
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2J6S
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![BU of 2j6s by Molmil](/molmil-images/mine/2j6s) | Ternary complex of Sulfolobus solfataricus Dpo4 DNA polymerase, O6- methylguanine modified DNA, and dATP. | 分子名称: | 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*C)-3', 5'-D(*TP*CP*AP*TP*XP*GP*AP*AP*TP*CP *CP*TP*TP*CP*CP*CP*CP*C)-3', ... | 著者 | Irimia, A, Eoff, R.L, Guengerich, F.P, Egli, M. | 登録日 | 2006-10-04 | 公開日 | 2006-11-22 | 最終更新日 | 2023-12-13 | 実験手法 | X-RAY DIFFRACTION (2.5 Å) | 主引用文献 | Sulfolobus Solfataricus DNA Polymerase Dpo4 is Partially Inhibited by "Wobble" Pairing between O6- Methylguanine and Cytosine, But Accurate Bypass is Preferred. J.Biol.Chem., 282, 2007
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4OV7
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![BU of 4ov7 by Molmil](/molmil-images/mine/4ov7) | Ancestral Steroid Receptor 2 DBD helix mutant - SRE DNA complex | 分子名称: | 5'-D(*CP*CP*AP*GP*AP*AP*CP*AP*GP*AP*GP*TP*GP*TP*TP*CP*TP*G)-3', 5'-D(*TP*CP*AP*GP*AP*AP*CP*AP*CP*TP*CP*TP*GP*TP*TP*CP*TP*G)-3', Ancestral Steroid Receptor 2 DBD helix mutant, ... | 著者 | Ortlund, E.A. | 登録日 | 2014-02-20 | 公開日 | 2014-10-29 | 最終更新日 | 2024-02-28 | 実験手法 | X-RAY DIFFRACTION (2.701 Å) | 主引用文献 | Evolution of DNA specificity in a transcription factor family produced a new gene regulatory module. Cell(Cambridge,Mass.), 159, 2014
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8BH3
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![BU of 8bh3 by Molmil](/molmil-images/mine/8bh3) | |
8BHV
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![BU of 8bhv by Molmil](/molmil-images/mine/8bhv) | |
8BHY
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![BU of 8bhy by Molmil](/molmil-images/mine/8bhy) | |
7T8I
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![BU of 7t8i by Molmil](/molmil-images/mine/7t8i) | |
2M87
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![BU of 2m87 by Molmil](/molmil-images/mine/2m87) | |
2J6U
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![BU of 2j6u by Molmil](/molmil-images/mine/2j6u) | Ternary complex of Sulfolobus solfataricus Dpo4 DNA polymerase, O6- methylguanine modified DNA, and dGTP. | 分子名称: | 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*T)-3', 5'-D(*TP*CP*AP*C G32P*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3', ... | 著者 | Eoff, R.L, Irimia, A, Guengerich, F.P, Egli, M. | 登録日 | 2006-10-04 | 公開日 | 2006-11-22 | 最終更新日 | 2023-12-13 | 実験手法 | X-RAY DIFFRACTION (2.5 Å) | 主引用文献 | Sulfolobus Solfataricus DNA Polymerase Dpo4 is Partially Inhibited by "Wobble" Pairing between O6- Methylguanine and Cytosine, But Accurate Bypass is Preferred. J.Biol.Chem., 282, 2007
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6VG6
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![BU of 6vg6 by Molmil](/molmil-images/mine/6vg6) | Crystal structure of DPO4 with 8-oxoadenine (oxoA) and dGTP* | 分子名称: | 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]guanosine, DNA (5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*C)-3'), DNA (5'-D(*TP*CP*AP*TP*(A38)P*GP*AP*AP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3'), ... | 著者 | Jung, H, Lee, S. | 登録日 | 2020-01-07 | 公開日 | 2021-01-06 | 最終更新日 | 2023-10-11 | 実験手法 | X-RAY DIFFRACTION (3.08 Å) | 主引用文献 | Promutagenic bypass of 7,8-dihydro-8-oxoadenine by translesion synthesis DNA polymerase Dpo4. Biochem.J., 477, 2020
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6VKP
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![BU of 6vkp by Molmil](/molmil-images/mine/6vkp) | Crystal structure of DPO4 extension past 8-oxoadenine (oxoA) and dG | 分子名称: | 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]adenosine, DNA (5'-D(*GP*GP*GP*GP*GP*AP*AP*AP*GP*AP*TP*TP*CP*G)-3'), DNA (5'-D(*TP*TP*CP*AP*TP*(A38)P*GP*AP*AP*TP*CP*TP*TP*TP*CP*CP*CP*CP*C)-3'), ... | 著者 | Jung, H, Lee, S. | 登録日 | 2020-01-21 | 公開日 | 2021-01-27 | 最終更新日 | 2023-10-11 | 実験手法 | X-RAY DIFFRACTION (2.54 Å) | 主引用文献 | Insights into the mismatch discrimination mechanism of Y-family DNA polymerase Dpo4. Biochem.J., 478, 2021
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4M8B
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![BU of 4m8b by Molmil](/molmil-images/mine/4m8b) | Fungal Protein | 分子名称: | 1,2-ETHANEDIOL, Chain A of dsDNA containing the cis-regulatory element, Chain B of dsDNA containing the cis-regulatory element, ... | 著者 | Rosenberg, O.S, Lohse, M.L, Stroud, R.M, Johnson, A.D. | 登録日 | 2013-08-13 | 公開日 | 2014-06-25 | 最終更新日 | 2024-04-03 | 実験手法 | X-RAY DIFFRACTION (2.61 Å) | 主引用文献 | Structure of a new DNA-binding domain which regulates pathogenesis in a wide variety of fungi. Proc.Natl.Acad.Sci.USA, 111, 2014
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2GPE
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![BU of 2gpe by Molmil](/molmil-images/mine/2gpe) | |
2K9S
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![BU of 2k9s by Molmil](/molmil-images/mine/2k9s) | |
3CQ8
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![BU of 3cq8 by Molmil](/molmil-images/mine/3cq8) | Ternary complex of the L415F mutant RB69 exo(-)polymerase | 分子名称: | CALCIUM ION, DNA (5'-D(*DAP*DCP*DAP*DGP*DGP*DTP*DAP*DAP*DGP*DCP*DAP*DGP*DTP*DCP*DCP*DGP*DCP*DG)-3'), DNA (5'-D(*DGP*DCP*DGP*DGP*DAP*DCP*DTP*DGP*DCP*DTP*DTP*DAP*DCP*DC)-3'), ... | 著者 | Zhong, X, Pedersen, L.C, Kunkel, T.A. | 登録日 | 2008-04-02 | 公開日 | 2008-09-02 | 最終更新日 | 2023-08-30 | 実験手法 | X-RAY DIFFRACTION (2.5 Å) | 主引用文献 | Characterization of a replicative DNA polymerase mutant with reduced fidelity and increased translesion synthesis capacity. Nucleic Acids Res., 36, 2008
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2AHI
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![BU of 2ahi by Molmil](/molmil-images/mine/2ahi) | Structural Basis of DNA Recognition by p53 Tetramers (complex III) | 分子名称: | 5'-D(*CP*GP*GP*AP*CP*AP*TP*GP*TP*CP*CP*G)-3', Cellular tumor antigen p53, ZINC ION | 著者 | Kitayner, M, Rozenberg, H, Kessler, N, Rabinovich, D, Shakked, Z. | 登録日 | 2005-07-28 | 公開日 | 2006-07-11 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (1.85 Å) | 主引用文献 | Structural Basis of DNA Recognition by p53 Tetramers Mol.Cell, 22, 2006
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1GPC
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![BU of 1gpc by Molmil](/molmil-images/mine/1gpc) | CORE GP32, DNA-BINDING PROTEIN | 分子名称: | PROTEIN (CORE GP32), ZINC ION | 著者 | Shamoo, Y, Friedman, A.M, Parsons, M.R, Konigsberg, W.H, Steitz, T.A. | 登録日 | 1995-06-01 | 公開日 | 1995-10-15 | 最終更新日 | 2024-02-07 | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | 主引用文献 | Crystal structure of a replication fork single-stranded DNA binding protein (T4 gp32) complexed to DNA. Nature, 376, 1995
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5HRH
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![BU of 5hrh by Molmil](/molmil-images/mine/5hrh) | |
1GT0
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![BU of 1gt0 by Molmil](/molmil-images/mine/1gt0) | Crystal structure of a POU/HMG/DNA ternary complex | 分子名称: | 5'-D(*AP*TP*CP*CP*CP*AP*TP*TP*AP*GP* CP*AP*TP*CP*CP*AP*AP*AP*CP*AP*AP*AP*GP*A)-3', 5'-D(*TP*TP*CP*TP*TP*TP*GP*TP*TP*TP* GP*GP*AP* TP*GP*CP*TP*AP*AP*TP*GP*GP*GP*A)-3', OCTAMER-BINDING TRANSCRIPTION FACTOR 1, ... | 著者 | Remenyi, A, Wilmanns, M. | 登録日 | 2002-01-09 | 公開日 | 2003-01-30 | 最終更新日 | 2024-05-08 | 実験手法 | X-RAY DIFFRACTION (2.6 Å) | 主引用文献 | Crystal Structure of a POU/Hmg/DNA Ternary Complex Suggests Differential Assembly of Oct4 and Sox2 on Two Enhancers Genes Dev., 17, 2003
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