PDB: 46169 件ウェブページステータス検索Chemie searchBIRD

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6CU9	Structure of human DNA polymerase beta complexed with 8-ClG in the template base paired with incoming non-hydrolyzable CTP and MANGANESE 分子名称: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]cytidine, DNA (5'-D(*CP*CP*GP*AP*CP*(CGM)P*TP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*A)-3'), ... 著者 Koag, M.-C, Lee, S. 登録日 2018-03-24 公開日 2019-03-27 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.04 Å) 主引用文献 Structure of human DNA polymerase beta complexed with 8-ClG in the template base paired with incoming non-hydrolyzable CTP and MANGANESE To Be Published
6CUA	Structure of human DNA polymerase beta complexed with 8-ClG in the template base paired with incoming non-hydrolyzable GTP and MANGANESE 分子名称: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]guanosine, DNA (5'-D(*CP*CP*GP*AP*CP*(CGM)P*TP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*A)-3'), ... 著者 Koag, M.-C, Lee, S. 登録日 2018-03-24 公開日 2019-03-27 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.17 Å) 主引用文献 Structure of human DNA polymerase beta complexed with 8-ClG in the template base paired with incoming non-hydrolyzable GTP and MANGANESE To Be Published
6CPQ	Structure of human DNA polymerase beta complexed with 8-ClG in the template base paired with incoming non-hydrolyzable CTP 分子名称: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]cytidine, DNA (5'-D(*CP*CP*GP*AP*CP*(CGM)P*TP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*A)-3'), ... 著者 Koag, M.-C, Lee, S. 登録日 2018-03-13 公開日 2019-03-20 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (1.93 Å) 主引用文献 Structure of human DNA polymerase beta complexed with 8-ClG in the template base paired with incoming non-hydrolyzable CTP To Be Published
6CUB	Structure of human DNA polymerase beta complexed with 8-ClG in the template base paired with incoming non-hydrolyzable ATP and MANGANESE 分子名称: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]adenosine, DNA (5'-D(*CP*CP*GP*AP*CP*(CGM)P*TP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*A)-3'), ... 著者 Koag, M.-C, Lee, S. 登録日 2018-03-25 公開日 2019-03-27 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.05 Å) 主引用文献 Structure of human DNA polymerase beta complexed with 8-ClG in the template base paired with incoming non-hydrolyzable ATP and MANGANESE To Be Published
6A9W	Structure of the bifunctional DNA primase-polymerase from phage NrS-1 分子名称: Primase 著者 Guo, H.J, Li, M.J, Wang, T.L, Wu, H, Zhou, H, Xu, C.Y, Liu, X.P, Yu, F, He, J.H. 登録日 2018-07-16 公開日 2019-03-13 最終更新日 2024-03-27 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Crystal structure and biochemical studies of the bifunctional DNA primase-polymerase from phage NrS-1. Biochem. Biophys. Res. Commun., 510, 2019
2C6Y	Crystal structure of interleukin enhancer-binding factor 1 bound to DNA 分子名称: FORKHEAD BOX PROTEIN K2, INTERLEUKIN 2 PROMOTOR, MAGNESIUM ION 著者 Tsai, K.-L, Huang, C.-Y, Chang, C.-H, Sun, Y.-J, Chuang, W.-J, Hsiao, C.-D. 登録日 2005-11-15 公開日 2006-04-18 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Crystal Structure of the Human Foxk1A-DNA Complex and its Implications on the Diverse Binding Specificity of Winged Helix/Forkhead Proteins. J.Biol.Chem., 281, 2006
1HW1	THE FADR-DNA COMPLEX: TRANSCRIPTIONAL CONTROL OF FATTY ACID METABOLISM IN ESCHERICHIA COLI 分子名称: FATTY ACID METABOLISM REGULATOR PROTEIN, SULFATE ION, ZINC ION 著者 Xu, Y, Heath, R.J, Li, Z, Rock, C.O, White, S.W. 登録日 2001-01-09 公開日 2001-01-24 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 The FadR.DNA complex. Transcriptional control of fatty acid metabolism in Escherichia coli. J.Biol.Chem., 276, 2001
4LDX	Crystal structure of the DNA binding domain of arabidopsis thaliana auxin response factor 1 (ARF1) in complex with protomor-like sequence ER7 分子名称: Auxin response factor 1, ER7, forward sequence, ... 著者 Boer, D.R, Freire-Rios, A, van den Berg, W.M.A, Weijers, D, Coll, M. 登録日 2013-06-25 公開日 2014-02-12 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Structural Basis for DNA Binding Specificity by the Auxin-Dependent ARF Transcription Factors. Cell(Cambridge,Mass.), 156, 2014
3WRP	FLEXIBILITY OF THE DNA-BINDING DOMAINS OF TRP REPRESSOR 分子名称: TRP REPRESSOR 著者 Zhang, R.-G, Sigler, P.B. 登録日 1987-12-01 公開日 1988-04-16 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Flexibility of the DNA-binding domains of trp repressor. Proteins, 3, 1988
7B0G	TgoT_6G12 binary with 2 hCTPs 分子名称: CYTIDINE-5'-TRIPHOSPHATE, DNA (5'-D(P*AP*TP*TP*GP*GP*CP*TP*GP*CP*CP*CP*TP*CP*C)-3'), DNA (5'-D(P*GP*GP*AP*GP*GP*GP*CP*AP*GP*()P*())-3'), ... 著者 Samson, C, Legrand, P, Tekpinar, M, Rozenski, J, Abramov, M, Holliger, P, Pinheiro, V, Herdewijn, P, Delarue, M. 登録日 2020-11-19 公開日 2020-12-30 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Structural Studies of HNA Substrate Specificity in Mutants of an Archaeal DNA Polymerase Obtained by Directed Evolution. Biomolecules, 10, 2020
1IO4	CRYSTAL STRUCTURE OF RUNX-1/AML1/CBFALPHA RUNT DOMAIN-CBFBETA CORE DOMAIN HETERODIMER AND C/EBPBETA BZIP HOMODIMER BOUND TO A DNA FRAGMENT FROM THE CSF-1R PROMOTER 分子名称: CAAT/ENHANCER BINDING PROTEIN BETA, CORE-BINDING FACTOR, BETA SUBUNIT, ... 著者 Tahirov, T.H, Ogata, K. 登録日 2001-01-10 公開日 2001-03-12 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Structural analyses of DNA recognition by the AML1/Runx-1 Runt domain and its allosteric control by CBFbeta. Cell(Cambridge,Mass.), 104, 2001
5OXJ	Crystal structure of KlenTaq mutant M747K in a closed ternary complex with a O6-MeG:BenziTP base pair 分子名称: ACETATE ION, DNA polymerase I, thermostable, ... 著者 Betz, K, Diederichs, K, Marx, A. 登録日 2017-09-06 公開日 2017-11-29 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structural basis for the selective incorporation of an artificial nucleotide opposite a DNA adduct by a DNA polymerase. Chem. Commun. (Camb.), 53, 2017
5O7T	Crystal structure of KlenTaq mutant M747K in a closed ternary complex with a dG:dCTP base pair 分子名称: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, DNA polymerase I, thermostable, ... 著者 Betz, K, Diederichs, K, Marx, A. 登録日 2017-06-09 公開日 2017-11-29 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Structural basis for the selective incorporation of an artificial nucleotide opposite a DNA adduct by a DNA polymerase. Chem. Commun. (Camb.), 53, 2017
7B07	TgoT_6G12 apo 分子名称: CALCIUM ION, DNA polymerase 著者 Samson, C, Legrand, P, Tekpinar, M, Rozenski, J, Abramov, M, Holliger, P, Pinheiro, V, Herdewijn, P, Delarue, M. 登録日 2020-11-18 公開日 2020-12-30 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (3.099 Å) 主引用文献 Structural Studies of HNA Substrate Specificity in Mutants of an Archaeal DNA Polymerase Obtained by Directed Evolution. Biomolecules, 10, 2020
1JT0	Crystal structure of a cooperative QacR-DNA complex 分子名称: HYPOTHETICAL TRANSCRIPTIONAL REGULATOR IN QACA 5'REGION, QACA operator, SULFATE ION 著者 Schumacher, M.A, Miller, M.C, Grkovic, S, Brown, M.H, Skurray, R.A, Brennan, R.G. 登録日 2001-08-20 公開日 2002-03-08 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Structural basis for cooperative DNA binding by two dimers of the multidrug-binding protein QacR. EMBO J., 21, 2002
1K78	Pax5(1-149)+Ets-1(331-440)+DNA 分子名称: C-ets-1 Protein, Paired Box Protein Pax5, Pax5/Ets Binding Site on the mb-1 promoter 著者 Garvie, C.W, Hagman, J, Wolberger, C. 登録日 2001-10-18 公開日 2002-01-04 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.25 Å) 主引用文献 Structural studies of Ets-1/Pax5 complex formation on DNA. Mol.Cell, 8, 2001
3ERE	Crystal structure of the arginine repressor protein from Mycobacterium tuberculosis in complex with the DNA operator 分子名称: 5'-D(*DTP*DTP*DGP*DCP*DAP*DTP*DAP*DAP*DCP*DGP*DAP*DTP*DGP*DCP*DAP*DA)-3', 5'-D(*DTP*DTP*DGP*DCP*DAP*DTP*DCP*DGP*DTP*DTP*DAP*DTP*DGP*DCP*DAP*DA)-3', Arginine repressor, ... 著者 Cherney, L.T, Cherney, M.M, Garen, C.R, Lu, G.J, James, M.N, TB Structural Genomics Consortium (TBSGC) 登録日 2008-10-01 公開日 2008-10-14 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Crystal structure of the arginine repressor protein in complex with the DNA operator from Mycobacterium tuberculosis. J.Mol.Biol., 384, 2008
1JE8	Two-Component response regulator NarL/DNA Complex: DNA Bending Found in a High Affinity Site 分子名称: 5'-D(*CP*GP*TP*AP*CP*CP*CP*AP*TP*TP*AP*AP*TP*GP*GP*GP*TP*AP*CP*G)-3', Nitrate/Nitrite Response Regulator Protein NARL, SULFATE ION 著者 Maris, A.E, Sawaya, M.R, Kaczor-Grzeskowiak, M, Jarvis, M.R, Bearson, S.M.D, Kopka, M.L, Schroder, I, Gunsalus, R.P, Dickerson, R.E. 登録日 2001-06-15 公開日 2002-09-27 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.12 Å) 主引用文献 Dimerization allows DNA target site recognition by the NarL response regulator. Nat.Struct.Biol., 9, 2002
6LBI	Crystal Structure of FOXO1-DBD homodimer bound to a palindromic DNA sequence 分子名称: Forkhead box protein O1, IRE0 著者 Li, J, Dai, S.Y, Chen, Y.H. 登録日 2019-11-14 公開日 2021-02-10 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (3.067 Å) 主引用文献 Mechanism of forkhead transcription factors binding to a novel palindromic DNA site. Nucleic Acids Res., 49, 2021
2XWR	Crystal structure of the DNA-binding domain of human p53 with extended N terminus 分子名称: CELLULAR TUMOR ANTIGEN P53, ZINC ION 著者 Joerger, A.C, Natan, E, Fersht, A.R. 登録日 2010-11-04 公開日 2011-03-30 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (1.68 Å) 主引用文献 Interaction of the P53 DNA-Binding Domain with its N-Terminal Extension Modulates the Stability of the P53 Tetramer. J.Mol.Biol., 409, 2011
2ETW	Principles of protein-DNA recognition revealed in the structural analysis of Ndt80-MSE DNA complexes 分子名称: 5'-D(*AP*GP*TP*TP*TP*TP*TP*GP*TP*GP*TP*GP*GP*C)-3', 5'-D(*TP*GP*CP*CP*AP*CP*AP*CP*AP*AP*AP*AP*AP*C)-3', NDT80 protein 著者 Lamoureux, J.S, Glover, J.N. 登録日 2005-10-27 公開日 2006-03-21 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (1.67 Å) 主引用文献 Principles of Protein-DNA Recognition Revealed in the Structural Analysis of Ndt80-MSE DNA Complexes. Structure, 14, 2006
1MN4	Structure of Ndt80 (Residues 59-340) DNA-binding domain core 分子名称: NDT80 PROTEIN 著者 Lamoureux, J.S, Stuart, D, Tsang, R, Wu, C, Glover, J.N.M. 登録日 2002-09-04 公開日 2002-11-06 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Structure of the sporulation-specific transcription factor Ndt80 bound to DNA Embo J., 21, 2002
5TWP	Pre-catalytic ternary complex of human Polymerase Mu with incoming nonhydrolyzable UMPNPP 分子名称: 1,2-ETHANEDIOL, 5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]uridine, DNA (5'-D(*CP*GP*GP*CP*AP*TP*AP*CP*G)-3'), ... 著者 Moon, A.F, Pryor, J.M, Ramsden, D.A, Kunkel, T.A, Bebenek, K, Pedersen, L.C. 登録日 2016-11-14 公開日 2017-07-05 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2.001 Å) 主引用文献 Structural accommodation of ribonucleotide incorporation by the DNA repair enzyme polymerase Mu. Nucleic Acids Res., 45, 2017
2EUV	Principles of protein-DNA recognition revealed in the structural analysis of Ndt80-MSE DNA complexes 分子名称: 5'-D(*AP*GP*TP*AP*TP*TP*TP*GP*TP*GP*TP*TP*GP*C)-3', 5'-D(*TP*GP*CP*AP*AP*CP*AP*CP*AP*AP*AP*TP*AP*C)-3', NDT80 protein 著者 Lamoureux, J.S, Glover, J.N. 登録日 2005-10-30 公開日 2006-03-21 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (1.94 Å) 主引用文献 Principles of Protein-DNA Recognition Revealed in the Structural Analysis of Ndt80-MSE DNA Complexes. Structure, 14, 2006
8OO6	Pol I bound to extended and displaced DNA section - closed conformation 分子名称: DNA polymerase I, Displaced primer, Extending Primer, ... 著者 Botto, M, Borsellini, A, Lamers, M.H. 登録日 2023-04-04 公開日 2023-08-09 最終更新日 2023-11-01 実験手法 ELECTRON MICROSCOPY (4.3 Å) 主引用文献 A four-point molecular handover during Okazaki maturation. Nat.Struct.Mol.Biol., 30, 2023

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