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7U58
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YcaO-mediated ATP-dependent peptidase activity in ribosomal peptide biosynthesis
分子名称: MAGNESIUM ION, MusD, ZINC ION
著者Zheng, Y, Nair, S.K.
登録日2022-03-01
公開日2022-11-02
最終更新日2024-06-12
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献YcaO-mediated ATP-dependent peptidase activity in ribosomal peptide biosynthesis.
Nat.Chem.Biol., 19, 2023
3J1N
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BU of 3j1n by Molmil
Cryo-EM map of a yeast minimal preinitiation complex interacting with the Mediator Head module
分子名称: DNA-directed RNA polymerase II subunit RPABC1, DNA-directed RNA polymerase II subunit RPABC2, DNA-directed RNA polymerase II subunit RPABC3, ...
著者Asturias, F.J, Imasaki, T.
登録日2012-03-29
公開日2013-03-06
最終更新日2024-02-21
実験手法ELECTRON MICROSCOPY (16 Å)
主引用文献Interaction of the mediator head module with RNA polymerase II.
Structure, 20, 2012
3JD5
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BU of 3jd5 by Molmil
Cryo-EM structure of the small subunit of the mammalian mitochondrial ribosome
分子名称: 28S ribosomal RNA, mitochondial, 28S ribosomal protein S10, ...
著者Kaushal, P.S, Sharma, M.R, Booth, T.M, Haque, E.M, Tung, C.S, Sanbonmatsu, K.Y, Spremulli, L.L, Agrawal, R.K.
登録日2016-04-08
公開日2016-07-13
最終更新日2018-07-18
実験手法ELECTRON MICROSCOPY (7 Å)
主引用文献Cryo-EM structure of the small subunit of the mammalian mitochondrial ribosome.
Proc.Natl.Acad.Sci.USA, 111, 2014
8OIP
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BU of 8oip by Molmil
28S mammalian mitochondrial small ribosomal subunit with mtRF1 and P-site tRNA
分子名称: 12S rRNA, 28S ribosomal protein S15, mitochondrial, ...
著者Saurer, M, Leibundgut, M, Scaiola, A, Schoenhut, T, Ban, N.
登録日2023-03-23
公開日2023-05-24
最終更新日2024-04-24
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献Molecular basis of translation termination at noncanonical stop codons in human mitochondria.
Science, 380, 2023
7VH9
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BU of 7vh9 by Molmil
Solution structure of the chimeric peptide of the first SURP domain of Human SF3A1 and the interacting region of SF1.
分子名称: Splicing factor 3A subunit 1,Splicing factor 1
著者Muto, Y, Kuwasako, K, Takizawa, M, Kobayashi, N, Sakamoto, T.
登録日2021-09-21
公開日2022-09-28
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Structural basis for the interaction between the first SURP domain of the SF3A1 subunit in U2 snRNP and the human splicing factor SF1.
Protein Sci., 31, 2022
8C0N
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BU of 8c0n by Molmil
Crystal structure of the red form of the mTagFT fluorescent timer
分子名称: Blue-to-red TagFT fluorescent timer
著者Boyko, K.M, Nikolaeva, A.Y, Vlaskina, A.V, Agapova, Y.K, Subach, O.M, Popov, V.O, Subach, F.V.
登録日2022-12-19
公開日2023-03-08
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Blue-to-Red TagFT, mTagFT, mTsFT, and Green-to-FarRed mNeptusFT2 Proteins, Genetically Encoded True and Tandem Fluorescent Timers.
Int J Mol Sci, 24, 2023
6GAZ
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BU of 6gaz by Molmil
Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 28S ribosomal subunit.
分子名称: 12S ribosomal RNA, mitochondrial, 28S ribosomal protein S18b, ...
著者Kummer, E, Leibundgut, M, Boehringer, D, Ban, N.
登録日2018-04-13
公開日2018-08-08
最終更新日2019-12-18
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM.
Nature, 560, 2018
6GAW
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Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the complete 55S ribosome.
分子名称: 12S ribosomal RNA, mitochondrial, 16S ribosomal RNA, ...
著者Kummer, E, Leibundgut, M, Boehringer, D, Ban, N.
登録日2018-04-13
公開日2018-08-22
最終更新日2019-12-11
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM.
Nature, 560, 2018
6EBG
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BU of 6ebg by Molmil
Ohr (Organic Hydroperoxide Resistance protein) mutant - C60S interacting with dihydrolipoamide
分子名称: (6S)-6,8-disulfanyloctanamide, Organic hydroperoxide resistance protein
著者Domingos, R.M, Teixeira, R.D, Alegria, T.G.P, Vieira, P.S, Murakami, M.T, Netto, L.E.S.
登録日2018-08-06
公開日2020-02-05
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Substrate and product-assisted catalysis: molecular aspects behind structural switches along Organic Hydroperoxide Resistance Protein catalytic cycle
Acs Catalysis, 2020
6N68
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BU of 6n68 by Molmil
NMR solution structure of Protonectin (Agelaia pallipes pallipes) interacting with SDS micelles: an antimicrobial peptide with anticancer activity on breast cancer cells
分子名称: Protonectin
著者Fadel, V, Martins, D.B, Dos Santos Cabrera, M.P.
登録日2018-11-26
公開日2020-06-03
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Protonectin peptides target lipids, act at the interface and selectively kill metastatic breast cancer cells while preserving morphological integrity.
J Colloid Interface Sci, 601, 2021
6NF8
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BU of 6nf8 by Molmil
Structure of human mitochondrial translation initiation factor 3 bound to the small ribosomal subunit -Class I
分子名称: 28S ribosomal RNA, mitochondria, 28S ribosomal protein S10, ...
著者Sharma, M, Koripella, R, Agrawal, R.
登録日2018-12-19
公開日2019-02-27
最終更新日2019-12-11
実験手法ELECTRON MICROSCOPY (3.48 Å)
主引用文献Structure of Human Mitochondrial Translation Initiation Factor 3 Bound to the Small Ribosomal Subunit.
iScience, 12, 2019
2FWM
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BU of 2fwm by Molmil
Crystal Structure of E. coli EntA, a 2,3-dihydrodihydroxy benzoate dehydrogenase
分子名称: 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase
著者Gulick, A.M, Duax, W.L.
登録日2006-02-02
公開日2006-06-27
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Determination of the crystal structure of EntA, a 2,3-dihydro-2,3-dihydroxybenzoic acid dehydrogenase from Escherichia coli.
Acta Crystallogr.,Sect.D, 62, 2006
4EPA
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BU of 4epa by Molmil
The crystal structure of the ferric yersiniabactin uptake receptor FyuA from Yersinia pestis
分子名称: LAURYL DIMETHYLAMINE-N-OXIDE, Pesticin receptor
著者Lukacik, P, Barnard, T.J, Buchanan, S.K.
登録日2012-04-17
公開日2012-06-20
最終更新日2012-07-04
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Structural engineering of a phage lysin that targets Gram-negative pathogens.
Proc.Natl.Acad.Sci.USA, 109, 2012
6TN6
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BU of 6tn6 by Molmil
X-ray structure of the endo-beta-1,4-mannanase from Thermotoga petrophila
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ...
著者da Silva, V.M, Squina, F.M, Sperenca, M, Martin, L, Muniz, J.R.C, Garcia, W, Nicolet, Y.
登録日2019-12-06
公開日2020-04-29
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献High-resolution structure of a modular hyperthermostable endo-beta-1,4-mannanase from Thermotoga petrophila: The ancillary immunoglobulin-like module is a thermostabilizing domain.
Biochim Biophys Acta Proteins Proteom, 1868, 2020
1G3P
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BU of 1g3p by Molmil
CRYSTAL STRUCTURE OF THE N-TERMINAL DOMAINS OF BACTERIOPHAGE MINOR COAT PROTEIN G3P
分子名称: MINOR COAT PROTEIN, SULFATE ION
著者Lubkowski, J, Hennecke, F, Pluckthun, A, Wlodawer, A.
登録日1997-12-22
公開日1998-01-28
最終更新日2019-08-14
実験手法X-RAY DIFFRACTION (1.46 Å)
主引用文献The structural basis of phage display elucidated by the crystal structure of the N-terminal domains of g3p.
Nat.Struct.Biol., 5, 1998
5EX6
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BU of 5ex6 by Molmil
Structure of P450 StaH from glycopeptide antibiotic A47934 biosynthesis
分子名称: 1,2-ETHANEDIOL, Cytochrome P450, GLYCEROL, ...
著者Cryle, M.J, Ulrich, V.
登録日2015-11-23
公開日2016-08-03
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献More than just recruitment: the X-domain influences catalysis of the first phenolic coupling reaction in A47934 biosynthesis by Cytochrome P450 StaH.
Mol Biosyst, 12, 2016
1Z1A
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BU of 1z1a by Molmil
S. cerevisiae Sir1 ORC-interaction domain
分子名称: Regulatory protein SIR1
著者Hou, Z, Bernstein, D.A, Fox, C.A, Keck, J.L.
登録日2005-03-03
公開日2005-06-07
最終更新日2021-10-20
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structural basis of the Sir1-origin recognition complex interaction in transcriptional silencing.
Proc.Natl.Acad.Sci.Usa, 102, 2005
1C1B
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BU of 1c1b by Molmil
CRYSTAL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE IN COMPLEX WITH GCA-186
分子名称: 6-(3',5'-DIMETHYLBENZYL)-1-ETHOXYMETHYL-5-ISOPROPYLURACIL, HIV-1 REVERSE TRANSCRIPTASE (A-CHAIN), HIV-1 REVERSE TRANSCRIPTASE (B-CHAIN)
著者Hopkins, A.L, Ren, J, Tanaka, H, Baba, B, Okamato, M, Stuart, D.I, Stammers, D.K.
登録日1999-07-21
公開日2000-07-21
最終更新日2014-11-12
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Design of MKC-442 (emivirine) analogues with improved activity against drug-resistant HIV mutants.
J.Med.Chem., 42, 1999
1HA3
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BU of 1ha3 by Molmil
ELONGATION FACTOR TU IN COMPLEX WITH aurodox
分子名称: BETA-MERCAPTOETHANOL, ELONGATION FACTOR TU, GUANOSINE-5'-DIPHOSPHATE, ...
著者Vogeley, L, Palm, G.J, Mesters, J.R, Hilgenfeld, R.
登録日2001-03-26
公開日2001-05-15
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Conformational Change of Elongation Factor TU Induced by Antibiotic Binding: Crystal Structure of the Complex between EF-TU:Gdp and Aurodox
J.Biol.Chem., 276, 2001
1HHA
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BU of 1hha by Molmil
Decaplanin first P6122-Form
分子名称: 4-epi-vancosamine, DECAPLANIN, GLYCEROL, ...
著者Lehmann, C, Vertessy, L, Sheldrick, G.M, Dauter, Z, Dauter, M.
登録日2000-12-22
公開日2005-07-11
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structures of Four Crystal Forms of Decaplanin
Helv.Chim.Acta, 86, 2003
7P7T
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BU of 7p7t by Molmil
PoxtA-EQ2 antibiotic resistance ABCF bound to E. faecalis 70S ribosome, state III
分子名称: 1,4-DIAMINOBUTANE, 16S rRNA, 23S rRNA, ...
著者Crowe-McAuliffe, C, Wilson, D.N.
登録日2021-07-20
公開日2022-02-23
最終更新日2024-07-17
実験手法ELECTRON MICROSCOPY (2.9 Å)
主引用文献Structural basis for PoxtA-mediated resistance to phenicol and oxazolidinone antibiotics.
Nat Commun, 13, 2022
7P7Q
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E. faecalis 70S ribosome bound by PoxtA-EQ2, high-resolution combined volume
分子名称: 1,4-DIAMINOBUTANE, 16S rRNA, 23S rRNA, ...
著者Crowe-McAuliffe, C, Wilson, D.N.
登録日2021-07-20
公開日2022-02-23
最終更新日2024-04-24
実験手法ELECTRON MICROSCOPY (2.4 Å)
主引用文献Structural basis for PoxtA-mediated resistance to phenicol and oxazolidinone antibiotics.
Nat Commun, 13, 2022
7P7U
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E. faecalis 70S ribosome with P-tRNA, state IV
分子名称: 1,4-DIAMINOBUTANE, 16S rRNA, 23S rRNA, ...
著者Crowe-McAuliffe, C, Wilson, D.N.
登録日2021-07-20
公開日2022-02-23
最終更新日2024-07-17
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Structural basis for PoxtA-mediated resistance to phenicol and oxazolidinone antibiotics.
Nat Commun, 13, 2022
7P7S
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PoxtA-EQ2 antibiotic resistance ABCF bound to E. faecalis 70S ribosome, state II
分子名称: 1,4-DIAMINOBUTANE, 16S rRNA, 23S rRNA, ...
著者Crowe-McAuliffe, C, Wilson, D.N.
登録日2021-07-20
公開日2022-02-23
最終更新日2024-07-17
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献Structural basis for PoxtA-mediated resistance to phenicol and oxazolidinone antibiotics.
Nat Commun, 13, 2022
3P26
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Crystal structure of S. cerevisiae Hbs1 protein (apo-form), a translational GTPase involved in RNA quality control pathways and interacting with Dom34/Pelota
分子名称: Elongation factor 1 alpha-like protein
著者van den Elzen, A, Henri, J, Lazar, N, Gas, M.E, Durand, D, Lacroute, F, Nicaise, M, van Tilbeurgh, H, Sraphin, B, Graille, M, Paris-Sud Yeast Structural Genomics (YSG)
登録日2010-10-01
公開日2010-11-17
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Dissection of Dom34-Hbs1 reveals independent functions in two RNA quality control pathways.
Nat.Struct.Mol.Biol., 17, 2010

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