PDB: 45953 件ウェブページステータス検索Chemie searchBIRD

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4O9I	Structure of CHD4 double chromodomains depicts cooperative folding for DNA binding 分子名称: Chromodomain-helicase-DNA-binding protein 4 著者 Wiggs, K.R, Chruszcz, M, Su, X, Minor, W, Khorasanizadeh, S. 登録日 2014-01-02 公開日 2015-07-08 最終更新日 2022-04-13 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Structure of CHD4 double chromodomains depicts cooperative folding for DNA binding TO BE PUBLISHED
6IML	The crystal structure of AsfvLIG:CT1 complex 分子名称: DNA (5'-D(*CP*CP*AP*GP*TP*CP*CP*GP*AP*CP*CP*CP*GP*CP*AP*TP*CP*CP*CP*GP*GP*A)-3'), DNA (5'-D(*TP*CP*CP*GP*GP*GP*AP*TP*GP*CP*GP*T)-3'), DNA (5'-D(P*GP*TP*CP*GP*GP*AP*CP*TP*GP*G)-3'), ... 著者 Chen, Y.Q, Gan, J.H. 登録日 2018-10-23 公開日 2019-02-27 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.35 Å) 主引用文献 Structure of the error-prone DNA ligase of African swine fever virus identifies critical active site residues. Nat Commun, 10, 2019
423D	5'-D(*AP*CP*CP*GP*AP*CP*GP*TP*CP*GP*GP*T)-3' 分子名称: DNA (5'-D(*AP*CP*CP*GP*AP*CP*GP*TP*CP*GP*GP*T)-3'), MAGNESIUM ION 著者 Rozenberg, H, Rabinovich, D, Frolow, F, Hegde, R.S, Shakked, Z. 登録日 1998-09-14 公開日 1999-10-14 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Structural code for DNA recognition revealed in crystal structures of papillomavirus E2-DNA targets. Proc.Natl.Acad.Sci.USA, 95, 1998
1KSB	Relationship of Solution and Protein-Bound Structures of DNA Duplexes with the Major Intrastrand Cross-Link Lesions Formed on Cisplatin Binding to DNA 分子名称: 5'-D(*AP*GP*GP*CP*CP*GP*GP*AP*G)-3', 5'-D(*CP*TP*CP*CP*GP*GP*CP*CP*T)-3', Cisplatin 著者 Marzilli, L.G, Saad, J.S, Kuklenyik, Z, Keating, K.A, Xu, Y. 登録日 2002-01-11 公開日 2002-01-17 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Relationship of solution and protein-bound structures of DNA duplexes with the major intrastrand cross-link lesions formed on cisplatin binding to DNA. J.Am.Chem.Soc., 123, 2001
1HM1	THE SOLUTION NMR STRUCTURE OF A THERMALLY STABLE FAPY ADDUCT OF AFLATOXIN B1 IN AN OLIGODEOXYNUCLEOTIDE DUPLEX REFINED FROM DISTANCE RESTRAINED MOLECULAR DYNAMICS SIMULATED ANNEALING, MINIMIZED AVERAGE STRUCTURE 分子名称: DNA (5'-D(*CP*TP*AP*TP*(FAG)P*AP*TP*TP*CP*A)-3'), DNA (5'-D(TP*GP*AP*AP*TP*CP*AP*TP*AP*G)-3') 著者 Mao, H, Deng, Z, Wang, F, Harris, T.M, Stone, M.P. 登録日 1998-05-11 公開日 1998-10-14 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 An intercalated and thermally stable FAPY adduct of aflatoxin B1 in a DNA duplex: structural refinement from 1H NMR. Biochemistry, 37, 1998
2QRV	Structure of Dnmt3a-Dnmt3L C-terminal domain complex 分子名称: DNA (cytosine-5)-methyltransferase 3-like, DNA (cytosine-5)-methyltransferase 3A, S-ADENOSYL-L-HOMOCYSTEINE 著者 Jia, D, Cheng, X. 登録日 2007-07-29 公開日 2007-12-04 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.89 Å) 主引用文献 Structure of Dnmt3a bound to Dnmt3L suggests a model for de novo DNA methylation. Nature, 449, 2007
8CMN	18mer DNA mimic Foldamer with an aliphatic linker in complex with Sac7d wild protein 分子名称: DNA-binding protein 7d, N-[2-(2-methyl-1,3-dioxolan-2-yl)phenyl]-2-{[5-(trifluoromethyl)pyridin-2-yl]amino}pyridine-4-carboxamide 著者 Deepak, D, Corvaglia, V, Wu, J, Huc, I. 登録日 2023-02-20 公開日 2023-07-19 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.65 Å) 主引用文献 18mer DNA mimic Foldamer with an aliphatic linker in complex with Sac7d wild protein To Be Published
8JA2	ASFV Topoisomerase ATPase domain in complex with AMP-PNP and Mg2+ 分子名称: DNA topoisomerase 2, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER 著者 Pang, A.H, Chang, C.-W, Tsai, M.-D. 登録日 2023-05-05 公開日 2024-02-07 最終更新日 2024-04-17 実験手法 X-RAY DIFFRACTION (1.73 Å) 主引用文献 A unified view on enzyme catalysis by cryo-EM study of a DNA topoisomerase. Commun Chem, 7, 2024
8JA1	ASFV Topoisomerase ATPase domain in complex with AMP-PNP and Mg2+ (oxidized form) 分子名称: DNA topoisomerase 2, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER 著者 Chang, C.-W, Pang, A.H, Tsai, M.-D. 登録日 2023-05-05 公開日 2024-02-07 最終更新日 2024-04-17 実験手法 X-RAY DIFFRACTION (1.14 Å) 主引用文献 A unified view on enzyme catalysis by cryo-EM study of a DNA topoisomerase. Commun Chem, 7, 2024
2YW6	Structural studies of N terminal deletion mutant of Dps from Mycobacterium smegmatis 分子名称: DNA protection during starvation protein 著者 Roy, S, Saraswathi, R, Gupta, S, Sekar, K, Chatterji, D, Vijayan, M. 登録日 2007-04-19 公開日 2007-07-17 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2.53 Å) 主引用文献 Role of N and C-terminal Tails in DNA Binding and Assembly in Dps: Structural Studies of Mycobacterium smegmatis Dps Deletion Mutants J.Mol.Biol., 370, 2007
3CPE	Crystal Structure of T4 gp17 分子名称: DNA packaging protein Gp17, PHOSPHATE ION, SODIUM ION 著者 Sun, S, Rossmann, M.G. 登録日 2008-03-31 公開日 2009-01-13 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 The structure of the phage T4 DNA packaging motor suggests a mechanism dependent on electrostatic forces Cell(Cambridge,Mass.), 135, 2008
4J4J	Crystal structure of the APOBEC3F Vif binding domain 分子名称: DNA dC->dU-editing enzyme APOBEC-3F, ZINC ION 著者 Siu, K.K, Sultana, A, Lee, J.E. 登録日 2013-02-06 公開日 2013-11-06 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Structural determinants of HIV-1 Vif susceptibility and DNA binding in APOBEC3F. Nat Commun, 4, 2013
1PDT	PD235, PNA-DNA DUPLEX, NMR, 8 STRUCTURES 分子名称: DNA (5'-D(*GP*AP*CP*AP*TP*AP*GP*C)-3', PEPTIDE NUCLEIC ACID (COOH-P(*G*C*T*A*T*G*T*C)-NH2) 著者 Eriksson, M, Nielsen, P.E. 登録日 1996-03-28 公開日 1996-10-14 最終更新日 2023-11-15 実験手法 SOLUTION NMR 主引用文献 Solution structure of a peptide nucleic acid-DNA duplex. Nat.Struct.Biol., 3, 1996
4MQD	Crystal structure of ComJ, inhibitor of the DNA degrading activity of NucA, from Bacillus subtilis 分子名称: DNA-entry nuclease inhibitor 著者 Chang, C, Mack, J, Clancy, S, Joachimiak, A, Midwest Center for Structural Genomics (MCSG) 登録日 2013-09-16 公開日 2013-10-09 最終更新日 2017-11-15 実験手法 X-RAY DIFFRACTION (2.16 Å) 主引用文献 Crystal structure of ComJ, inhibitor of the DNA degrading activity of NucA, from Bacillus subtilis To be Published
2QSJ	Crystal structure of a LuxR family DNA-binding response regulator from Silicibacter pomeroyi 分子名称: DNA-binding response regulator, LuxR family 著者 Bonanno, J.B, Freeman, J, Bain, K.T, Mendoza, M, Romero, R, Smith, D, Wasserman, S, Sauder, J.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC) 登録日 2007-07-31 公開日 2007-08-14 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Crystal structure of a LuxR family DNA-binding response regulator from Silicibacter pomeroyi. To be Published
6J0I	Structure of [Co2+-(Chromomycin A3)2]-d(TTGGCGAA)2 complex 分子名称: 1,2-HYDRO-1-OXY-3,4-HYDRO-3-(1-METHOXY-2-OXY-3,4-DIHYDROXYPENTYL)-8,9-DIHYROXY-7-METHYLANTHRACENE, 2,6-dideoxy-4-O-methyl-alpha-D-galactopyranose-(1-3)-(2R,3R,6R)-6-hydroxy-2-methyltetrahydro-2H-pyran-3-yl acetate, 3-C-methyl-4-O-acetyl-alpha-L-Olivopyranose-(1-3)-(2R,5S,6R)-6-methyltetrahydro-2H-pyran-2,5-diol-(1-3)-(2R,5S,6R)-6-methyltetrahydro-2H-pyran-2,5-diol, ... 著者 Satange, R.B, Chuang, C.Y, Hou, M.H. 登録日 2018-12-24 公開日 2019-07-24 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Polymorphic G:G mismatches act as hotspots for inducing right-handed Z DNA by DNA intercalation. Nucleic Acids Res., 47, 2019
6J0H	Crystal structure of Actinomycin D- d(TTGGCGAA) complex 分子名称: Actinomycin D, DNA (5'-D(P*TP*TP*GP*GP*CP*GP*AP*A)-3'), SODIUM ION 著者 Satange, R.B, Hou, M.H. 登録日 2018-12-24 公開日 2019-07-24 最終更新日 2024-07-10 実験手法 X-RAY DIFFRACTION (1.52 Å) 主引用文献 Polymorphic G:G mismatches act as hotspots for inducing right-handed Z DNA by DNA intercalation. Nucleic Acids Res., 47, 2019
8C84	Crystal structure of MADS-box/MEF2D N-terminal domain complex 分子名称: DNA (5'-D(P*AP*AP*CP*TP*AP*TP*TP*TP*AP*TP*AP*AP*GP*A)-3'), DNA (5'-D(P*TP*CP*TP*TP*AP*TP*AP*AP*AP*TP*AP*GP*TP*T)-3'), MEF2D protein 著者 Chinellato, M, Carli, A, Perin, S, Mazzoccato, Y, Di Giorgio, E, Brancolini, C, Angelini, A, Cendron, L. 登録日 2023-01-18 公開日 2024-01-31 最終更新日 2024-04-17 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Folding of Class IIa HDAC Derived Peptides into alpha-helices Upon Binding to Myocyte Enhancer Factor-2 in Complex with DNA. J.Mol.Biol., 436, 2024
4FBK	Crystal structure of a covalently fused Nbs1-Mre11 complex with one manganese ion per active site 分子名称: DNA repair and telomere maintenance protein nbs1,DNA repair protein rad32 CHIMERIC PROTEIN, MANGANESE (II) ION, SULFATE ION 著者 Schiller, C.B, Lammens, K, Hopfner, K.P. 登録日 2012-05-23 公開日 2012-06-20 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.379 Å) 主引用文献 Structure of Mre11-Nbs1 complex yields insights into ataxia-telangiectasia-like disease mutations and DNA damage signaling. Nat.Struct.Mol.Biol., 19, 2012
4FBQ	Crystal structure of a covalently fused Nbs1-Mre11 complex with two manganese ions per active site 分子名称: DNA repair and telomere maintenance protein nbs1,DNA repair protein rad32 CHIMERIC PROTEIN, MANGANESE (II) ION 著者 Schiller, C.B, Lammens, K, Hopfner, K.P. 登録日 2012-05-23 公開日 2012-06-20 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Structure of Mre11-Nbs1 complex yields insights into ataxia-telangiectasia-like disease mutations and DNA damage signaling. Nat.Struct.Mol.Biol., 19, 2012
1DUF	THE NMR STRUCTURE OF DNA DODECAMER DETERMINED IN AQUEOUS DILUTE LIQUID CRYSTALLINE PHASE 分子名称: DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3') 著者 Tjandra, N, Tate, S, Ono, A, Kainosho, M, Bax, A. 登録日 2000-01-17 公開日 2000-07-14 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 The NMR Structure of a DNA Dodecamer in an Aqueous Dilute Liquid Crystalline Phase J.Am.Chem.Soc., 122, 2000
3BAC	Structural Basis for the Inhibition of Bacterial NAD+ Dependent DNA Ligase 分子名称: DNA ligase, N-[2-(2,4-diaminopyrido[2,3-d]pyrimidin-7-yl)-2-methylpropyl]-4-phenoxybenzamide, PHOSPHATE ION 著者 Pinko, C. 登録日 2007-11-07 公開日 2008-11-11 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Structural Basis for the Inhibition of Bacterial NAD+ Dependent DNA Ligase To be Published
7ZQN	d(CGCGCG)2 Z-DNA AT 5400 BARS (540 MPa) 分子名称: DNA (5'-D(*CP*GP*CP*GP*CP*G)-3'), MAGNESIUM ION 著者 Prange, T, Colloc'h, N, Girard, E. 登録日 2022-05-01 公開日 2023-03-08 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.41 Å) 主引用文献 Behavior of B- and Z-DNA Crystals under High Hydrostatic Pressure Crystals, 2022
7ZQO	d(CGCGCG)2 Z-DNA AT 7150 BARS (715 MPa) 分子名称: DNA (5'-D(*CP*GP*CP*GP*CP*G)-3') 著者 Prange, T, Colloc'h, N, Girard, E. 登録日 2022-05-01 公開日 2023-03-08 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Behavior of B- and Z-DNA Crystals under High Hydrostatic Pressure Crystals, 2022
172D	MULTIPLE BINDING MODES OF ANTICANCER DRUG ACTINOMYCIN D: X-RAY, MOLECULAR MODELING, AND SPECTROSCOPIC STUDIES OF D(GAAGCTTC)2-ACTINOMYCIN D COMPLEXES AND ITS HOST DNA 分子名称: DNA (5'-D(*GP*AP*AP*GP*CP*TP*TP*C)-3') 著者 Kamitori, S, Takusagawa, F. 登録日 1994-04-18 公開日 1994-10-15 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Multiple Binding Modes of Anticancer Drug Actinomycin D: X-Ray, Molecular Modeling, and Spectroscopic Studies of d(GAAGCTTC)2-Actinomycin D Complexes and Its Host DNA J.Am.Chem.Soc., 116, 1994

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