PDB: 45817 件ウェブページステータス検索Chemie searchBIRD

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5H6K	DNA targeting ADP-ribosyltransferase Pierisin-1 分子名称: 1,2-ETHANEDIOL, Pierisin-1 著者 Oda, T, Hirabayashi, H, Shikauchi, G, Takamura, R, Hiraga, K, Minami, H, Hashimoto, H, Yamamoto, M, Wakabayashi, K, Sugimura, T, Shimizu, T, Sato, M. 登録日 2016-11-14 公開日 2017-08-09 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Structural basis of autoinhibition and activation of the DNA-targeting ADP-ribosyltransferase pierisin-1 J. Biol. Chem., 292, 2017
3U6C	MutM set 1 ApGo 分子名称: DNA (5'-D(*GP*GP*TP*AP*GP*AP*TP*CP*CP*TP*GP*AP*C)-3'), DNA (5'-D(P*CP*AP*(8OG)P*GP*AP*(TX)P*CP*TP*AP*C)-3'), Formamidopyrimidine-DNA glycosylase, ... 著者 Sung, R.J, Zhang, M, Qi, Y, Verdine, G.L. 登録日 2011-10-12 公開日 2012-04-25 最終更新日 2013-09-25 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Sequence-dependent structural variation in DNA undergoing intrahelical inspection by the DNA glycosylase MutM. J.Biol.Chem., 287, 2012
3U6D	MutM set 1 GpGo 分子名称: DNA (5'-D(*A*GP*GP*TP*AP*GP*AP*TP*CP*CP*CP*GP*AP*CP*GP*C)-3'), DNA (5'-D(*TP*GP*CP*GP*TP*CP*GP*(8OG)P*GP*AP*(TX)P*CP*TP*AP*CP*C)-3'), Formamidopyrimidine-DNA glycosylase, ... 著者 Sung, R.J, Zhang, M, Qi, Y, Verdine, G.L. 登録日 2011-10-12 公開日 2012-04-25 最終更新日 2013-09-25 実験手法 X-RAY DIFFRACTION (1.87 Å) 主引用文献 Sequence-dependent structural variation in DNA undergoing intrahelical inspection by the DNA glycosylase MutM. J.Biol.Chem., 287, 2012
2QRV	Structure of Dnmt3a-Dnmt3L C-terminal domain complex 分子名称: DNA (cytosine-5)-methyltransferase 3-like, DNA (cytosine-5)-methyltransferase 3A, S-ADENOSYL-L-HOMOCYSTEINE 著者 Jia, D, Cheng, X. 登録日 2007-07-29 公開日 2007-12-04 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.89 Å) 主引用文献 Structure of Dnmt3a bound to Dnmt3L suggests a model for de novo DNA methylation. Nature, 449, 2007
3U6L	MutM set 2 CpGo 分子名称: DNA (5'-D(*AP*GP*GP*TP*AP*GP*AP*CP*CP*GP*GP*AP*CP*GP*C)-3'), DNA (5'-D(*TP*GP*CP*GP*TP*CP*CP*(8OG)P*GP*TP*(CX2)P*TP*AP*CP*C)-3'), Formamidopyrimidine-DNA glycosylase, ... 著者 Sung, R.J, Zhang, M, Qi, Y, Verdine, G.L. 登録日 2011-10-12 公開日 2012-04-25 最終更新日 2017-01-11 実験手法 X-RAY DIFFRACTION (1.97 Å) 主引用文献 Sequence-dependent structural variation in DNA undergoing intrahelical inspection by the DNA glycosylase MutM. J.Biol.Chem., 287, 2012
3U6M	Structural effects of sequence context on lesion recognition by MutM 分子名称: DNA (5'-D(*AP*GP*GP*TP*AP*GP*AP*CP*CP*AP*GP*GP*AP*CP*GP*C)-3'), DNA (5'-D(*TP*GP*CP*GP*TP*CP*CP*TP*(8OG)P*GP*TP*(CX2)P*TP*AP*CP*C)-3'), Formamidopyrimidine-DNA glycosylase, ... 著者 Sung, R.J, Zhang, M, Qi, Y, Verdine, G.L. 登録日 2011-10-12 公開日 2012-04-25 最終更新日 2013-09-25 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Sequence-dependent structural variation in DNA undergoing intrahelical inspection by the DNA glycosylase MutM. J.Biol.Chem., 287, 2012
5LME	Specific-DNA binding activity of the cross-brace zinc finger motif of the piggyBac transposase 分子名称: ZINC ION, piggyBac transposase 著者 Morellet, N, Taylor, J.A, Wieninger, S, Moriau, S, Li, X, Lescop, E, Mathy, N, Bischerour, J, Betermier, M, Bardiaux, B, Nilges, M, Craig, N.L, Hickman, A.B, Dyda, F, Guittet, E. 登録日 2016-07-30 公開日 2017-12-20 最終更新日 2024-06-19 実験手法 SOLUTION NMR 主引用文献 Sequence-specific DNA binding activity of the cross-brace zinc finger motif of the piggyBac transposase. Nucleic Acids Res., 46, 2018
7JY2	Z-DNA joint X-ray/Neutron 分子名称: Chains: A,B 著者 Harp, J.M, Coates, L, Egli, M. 登録日 2020-08-28 公開日 2021-04-28 最終更新日 2024-04-03 実験手法 NEUTRON DIFFRACTION (1.5 Å), X-RAY DIFFRACTION 主引用文献 Water structure around a left-handed Z-DNA fragment analyzed by cryo neutron crystallography. Nucleic Acids Res., 49, 2021
4OCB	Z-DNA dodecamer d(CGCGCGCGCGCG)2 at 0.75 A resolution solved by P-SAD 分子名称: d(CGCGCGCGCGCG)2 duplex 著者 Luo, Z, Dauter, M, Dauter, Z. 登録日 2014-01-08 公開日 2014-01-22 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (0.75 Å) 主引用文献 Phosphates in the Z-DNA dodecamer are flexible, but their P-SAD signal is sufficient for structure solution Acta Crystallogr.,Sect.D, D70, 2014
4RP2	Sequence and structure of a self-assembled 3-D DNA crystal: D(GGATAGCTAGGAG) 分子名称: D(GGATAGCTAGGAG), MAGNESIUM ION 著者 Saoji, M.M, Paukstelis, P.J. 登録日 2014-10-29 公開日 2015-06-17 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.32 Å) 主引用文献 Probing the role of sequence in the assembly of three-dimensional DNA crystals. Biopolymers, 103, 2015
4ROY	Sequence and structure of a self-assembled 3-D DNA crystal: D(GGACGATCGGGAG) 分子名称: D(GGACGATCGGGAG), MAGNESIUM ION 著者 Saoji, M.M, Paukstelis, P.J. 登録日 2014-10-29 公開日 2015-06-17 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.09 Å) 主引用文献 Probing the role of sequence in the assembly of three-dimensional DNA crystals. Biopolymers, 103, 2015
4ROG	Sequence and structure of a self-assembled 3-D DNA crystal: D(GGACACGTGGGAG) 分子名称: D(GGACACGTGGGAG), MAGNESIUM ION 著者 Saoji, M.M, Paukstelis, P.J. 登録日 2014-10-28 公開日 2015-06-17 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.08 Å) 主引用文献 Probing the role of sequence in the assembly of three-dimensional DNA crystals. Biopolymers, 103, 2015
4ROK	Sequence and structure of a self-assembled 3-D DNA crystal: D(GGACAGCTGGGAG) 分子名称: D(GGACAGCTGGGAG), MAGNESIUM ION 著者 Saoji, M.M, Paukstelis, P.J. 登録日 2014-10-28 公開日 2015-06-17 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.16 Å) 主引用文献 Probing the role of sequence in the assembly of three-dimensional DNA crystals. Biopolymers, 103, 2015
4RON	Sequence and structure of a self-assembled 3-D DNA crystal: D(GGACCATGGGGAG) 分子名称: D(GGACCATGGGGAG), MAGNESIUM ION 著者 Saoji, M.M, Paukstelis, P.J. 登録日 2014-10-28 公開日 2015-06-17 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.39 Å) 主引用文献 Probing the role of sequence in the assembly of three-dimensional DNA crystals. Biopolymers, 103, 2015
4ROO	Sequence and structure of a self-assembled 3-D DNA crystal: D(GGACCGCGGGGAG) 分子名称: D(GGACCGCGGGGAG), MAGNESIUM ION 著者 Saoji, M.M, Paukstelis, P.J. 登録日 2014-10-28 公開日 2015-06-17 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.37 Å) 主引用文献 Probing the role of sequence in the assembly of three-dimensional DNA crystals. Biopolymers, 103, 2015
4ROZ	Sequence and structure of a self-assembled 3-D DNA crystal: D(GGACGGCCGGGAG) 分子名称: D(GGACGGCCGGGAG), MAGNESIUM ION 著者 Saoji, M.M, Paukstelis, P.J. 登録日 2014-10-29 公開日 2015-06-17 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.08 Å) 主引用文献 Probing the role of sequence in the assembly of three-dimensional DNA crystals. Biopolymers, 103, 2015
8VMR	Homing endonuclease I-PpoI-DNA complex:reaction at pH7.0 (K+ MES) with 500 uM Mg2+ for 40s 分子名称: DNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*TP*CP*TP*TP*AP*A)-3'), GLYCEROL, Intron-encoded endonuclease I-PpoI, ... 著者 Chang, C, Gao, Y. 登録日 2024-01-13 公開日 2024-07-10 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Homing endonuclease I-PpoI-DNA complex:reaction with 500 uM Mg2+ for 160s To Be Published
4RP1	Sequence and structure of a self-assembled 3-D DNA crystal: D(GGATACGTAGGAG) 分子名称: D(GGATACGTAGGAG), MAGNESIUM ION 著者 Saoji, M.M, Paukstelis, P.J. 登録日 2014-10-29 公開日 2015-06-17 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.27 Å) 主引用文献 Probing the role of sequence in the assembly of three-dimensional DNA crystals. Biopolymers, 103, 2015
4RNK	Sequence and structure of a self-assembled 3-D DNA crystal: D(GGAAAATTTGGAG) 分子名称: GGAAAATTTGGAG, MAGNESIUM ION 著者 Saoji, M.M, Paukstelis, P.J. 登録日 2014-10-24 公開日 2015-06-17 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.08 Å) 主引用文献 Probing the role of sequence in the assembly of three-dimensional DNA crystals. Biopolymers, 103, 2015
4RO7	Sequence and structure of a self-assembled 3-D DNA crystal: D(GGAAAGCTTGGAG) 分子名称: D(GGAAAGCTTGGAG), MAGNESIUM ION 著者 Saoji, M.M, Paukstelis, P.J. 登録日 2014-10-28 公開日 2015-06-17 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.03 Å) 主引用文献 Probing the role of sequence in the assembly of three-dimensional DNA crystals. Biopolymers, 103, 2015
4RO8	Sequence and structure of a self-assembled 3-D DNA crystal: D(GGAATCGATGGAG) 分子名称: D(GGAATCGATGGAG), MAGNESIUM ION 著者 Saoji, M.M, Paukstelis, P.J. 登録日 2014-10-28 公開日 2015-06-17 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.08 Å) 主引用文献 Probing the role of sequence in the assembly of three-dimensional DNA crystals. Biopolymers, 103, 2015
5H6M	DNA targeting ADP-ribosyltransferase Pierisin-1 分子名称: 1,2-ETHANEDIOL, Pierisin-1 著者 Oda, T, Hirabayashi, H, Shikauchi, G, Takamura, R, Hiraga, K, Minami, H, Hashimoto, H, Yamamoto, M, Wakabayashi, K, Sugimura, T, Shimizu, T, Sato, M. 登録日 2016-11-14 公開日 2017-08-09 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Structural basis of autoinhibition and activation of the DNA-targeting ADP-ribosyltransferase pierisin-1 J. Biol. Chem., 292, 2017
2Z43	Structure of a twinned crystal of RadA 分子名称: DNA repair and recombination protein radA 著者 Chen, L.T, Ko, T.P, Wang, A.H.J, Wang, T.F. 登録日 2007-06-12 公開日 2007-11-13 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (1.93 Å) 主引用文献 Structural and functional analyses of five conserved positively charged residues in the L1 and N-terminal DNA binding motifs of archaeal RADA protein Plos One, 2, 2007
3V7K	Co-crystal structure of K72E variant of rat polymerase beta: Enzyme-DNA binary complex 分子名称: DNA (5'-D(P*AP*TP*GP*TP*GP*AP*GP*T)-3'), DNA (5'-D(P*CP*AP*AP*AP*CP*TP*CP*AP*CP*AP*A)-3'), DNA polymerase beta, ... 著者 Rangarajan, S, Jaeger, J. 登録日 2011-12-21 公開日 2013-01-16 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.271 Å) 主引用文献 Crystallographic studies of K72E mutant DNA polymerase explain loss of lyase function and reveal changes in the overall conformational state of the polymerase domain To be Published
8H5Z	Crystal structure of RadD/ATP analogue complex 分子名称: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER, Putative DNA repair helicase RadD, ZINC ION 著者 Yan, X.X, Tian, L.F. 登録日 2022-10-14 公開日 2023-10-18 実験手法 X-RAY DIFFRACTION (3.00002718 Å) 主引用文献 Biochemical and Structural Analyses Shed Light on the Mechanisms of RadD DNA Binding and Its ATPase from Escherichia coli. Int J Mol Sci, 24, 2023

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