Loading
PDBj
メニューPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

8BKH
DownloadVisualize
BU of 8bkh by Molmil
Carboxymyoglobin dark state for comparison with power titration and 23 / 101 mJ/cm2 time series
分子名称: CARBON MONOXIDE, Myoglobin, PROTOPORPHYRIN IX CONTAINING FE, ...
著者Barends, T, Schlichting, I.
登録日2022-11-09
公開日2024-01-31
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (1.35 Å)
主引用文献Influence of pump laser fluence on ultrafast myoglobin structural dynamics.
Nature, 626, 2024
8BEI
DownloadVisualize
BU of 8bei by Molmil
Structure of hexameric subcomplexes (Truncation Delta2-6) of the fractal citrate synthase from Synechococcus elongatus PCC7942
分子名称: Citrate synthase
著者Lo, Y.K, Bohn, S, Sendker, F.L, Schuller, J.M, Hochberg, G.
登録日2022-10-21
公開日2024-02-28
最終更新日2024-09-11
実験手法ELECTRON MICROSCOPY (3.06 Å)
主引用文献Emergence of fractal geometries in the evolution of a metabolic enzyme.
Nature, 628, 2024
7PW5
DownloadVisualize
BU of 7pw5 by Molmil
Human SMG1-8-9 kinase complex with AlphaFold predicted SMG8 C-terminus, bound to a SMG1 inhibitor
分子名称: 1-[4-[4-[2-[[4-chloranyl-3-(diethylsulfamoyl)phenyl]amino]pyrimidin-4-yl]pyridin-2-yl]phenyl]-3-methyl-urea, ADENOSINE-5'-TRIPHOSPHATE, INOSITOL HEXAKISPHOSPHATE, ...
著者Langer, L.M, Conti, E.
登録日2021-10-06
公開日2021-12-01
最終更新日2025-07-09
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Cryo-EM reconstructions of inhibitor-bound SMG1 kinase reveal an autoinhibitory state dependent on SMG8.
Elife, 10, 2021
7Q03
DownloadVisualize
BU of 7q03 by Molmil
Ketol-acid reductoisomerase from Methanothermococcus thermolithotrophicus in the close state with NADP and Mg2+
分子名称: 1,2-ETHANEDIOL, 2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXYL, GLYCEROL, ...
著者Lemaire, O.N, Mueller, M, Wagner, T.
登録日2021-10-14
公開日2021-12-08
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structural Rearrangements of a Dodecameric Ketol-Acid Reductoisomerase Isolated from a Marine Thermophilic Methanogen.
Biomolecules, 11, 2021
2DM5
DownloadVisualize
BU of 2dm5 by Molmil
Thermodynamic Penalty Arising From Burial of a Ligand Polar Group Within a Hydrophobic Pocket of a Protein Receptor
分子名称: CADMIUM ION, Major Urinary Protein, OCTANE-1,8-DIOL
著者Barratt, E, Bronowska, A, Vondrasek, J, Bingham, R, Phillips, S, Homans, S.W.
登録日2006-04-20
公開日2006-10-17
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Thermodynamic penalty arising from burial of a ligand polar group within a hydrophobic pocket of a protein receptor
J.Mol.Biol., 362, 2006
7Q07
DownloadVisualize
BU of 7q07 by Molmil
Ketol-acid reductoisomerase from Methanothermococcus thermolithotrophicus in the open state with NADP and tartrate
分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, Ketol-Acid Reductoisomerase from Methanothermococcus thermolithotrophicus, ...
著者Lemaire, O.N, Mueller, M, Wagner, T.
登録日2021-10-14
公開日2021-12-08
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structural Rearrangements of a Dodecameric Ketol-Acid Reductoisomerase Isolated from a Marine Thermophilic Methanogen.
Biomolecules, 11, 2021
7Q5P
DownloadVisualize
BU of 7q5p by Molmil
Structure of VgrG1 from Pseudomonas protegens.
分子名称: Type VI secretion protein VgrG
著者Guenther, P, Quentin, D, Ahmad, S, Sachar, K, Gatsogiannis, C, Whitney, J.C, Raunser, S.
登録日2021-11-04
公開日2021-12-15
最終更新日2024-07-17
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Structure of a bacterial Rhs effector exported by the type VI secretion system.
Plos Pathog., 18, 2022
7Q97
DownloadVisualize
BU of 7q97 by Molmil
Structure of the bacterial type VI secretion system effector RhsA.
分子名称: Rhs family protein
著者Guenther, P, Quentin, D, Ahmad, S, Sachar, K, Gatsogiannis, C, Whitney, J.C, Raunser, S.
登録日2021-11-12
公開日2021-12-22
最終更新日2024-07-17
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Structure of a bacterial Rhs effector exported by the type VI secretion system.
Plos Pathog., 18, 2022
7QDZ
DownloadVisualize
BU of 7qdz by Molmil
80S-bound human SKI complex in the closed state
分子名称: Helicase SKI2W, RNA (5'-R(P*UP*UP*UP*UP*UP*U)-3'), Tetratricopeptide repeat protein 37, ...
著者Koegel, A, Keidel, A, Bonneau, F, Schaefer, I.B, Conti, E.
登録日2021-12-01
公開日2022-02-09
最終更新日2024-07-17
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献The human SKI complex regulates channeling of ribosome-bound RNA to the exosome via an intrinsic gatekeeping mechanism.
Mol.Cell, 82, 2022
7QE0
DownloadVisualize
BU of 7qe0 by Molmil
80S-bound human SKI complex in the open state
分子名称: Helicase SKI2W, RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*U)-3')
著者Koegel, A, Keidel, A, Bonneau, F, Schaefer, I.B, Conti, E.
登録日2021-12-01
公開日2022-02-09
最終更新日2024-07-17
実験手法ELECTRON MICROSCOPY (6.5 Å)
主引用文献The human SKI complex regulates channeling of ribosome-bound RNA to the exosome via an intrinsic gatekeeping mechanism.
Mol.Cell, 82, 2022
8BPX
DownloadVisualize
BU of 8bpx by Molmil
Cryo-EM structure of the Arabidopsis thaliana I+III2 supercomplex (Complete composition)
分子名称: (1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE, (7S)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSAN-1-AMINIUM 4-OXIDE, 1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE, ...
著者Klusch, N, Kuehlbrandt, W.
登録日2022-11-18
公開日2023-01-25
最終更新日2024-11-06
実験手法ELECTRON MICROSCOPY (2.09 Å)
主引用文献Cryo-EM structure of the respiratory I + III 2 supercomplex from Arabidopsis thaliana at 2 angstrom resolution.
Nat.Plants, 9, 2023
7QDS
DownloadVisualize
BU of 7qds by Molmil
Apo human SKI complex in the open state
分子名称: Helicase SKI2W, Tetratricopeptide repeat protein 37, WD repeat-containing protein 61
著者Koegel, A, Keidel, A, Bonneau, A, Schaefer, I.B, Conti, E.
登録日2021-11-30
公開日2022-02-02
最終更新日2024-07-17
実験手法ELECTRON MICROSCOPY (3.8 Å)
主引用文献The human SKI complex regulates channeling of ribosome-bound RNA to the exosome via an intrinsic gatekeeping mechanism.
Mol.Cell, 82, 2022
7QLA
DownloadVisualize
BU of 7qla by Molmil
Structure of the Rab GEF complex Mon1-Ccz1
分子名称: Ccz1, Vacuolar fusion protein MON1
著者Klink, B.U, Herrmann, E, Antoni, C, Langemeyer, L, Kiontke, S, Gatsogiannis, C, Ungermann, C, Raunser, S, Kuemmel, D.
登録日2021-12-20
公開日2022-02-09
最終更新日2025-07-09
実験手法ELECTRON MICROSCOPY (3.85 Å)
主引用文献Structure of the Mon1-Ccz1 complex reveals molecular basis of membrane binding for Rab7 activation.
Proc.Natl.Acad.Sci.USA, 119, 2022
2PHW
DownloadVisualize
BU of 2phw by Molmil
Pterocarpus angolensis lectin (PAL) in complex with Man-9
分子名称: CALCIUM ION, Lectin, MANGANESE (II) ION, ...
著者Garcia-Pino, A, Buts, L, Wyns, L, Imberty, A, Loris, R.
登録日2007-04-12
公開日2007-07-10
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献How a plant lectin recognizes high mannose oligosaccharides
Plant Physiol., 144, 2007
7QDR
DownloadVisualize
BU of 7qdr by Molmil
Apo human SKI complex in the closed state
分子名称: Helicase SKI2W, Tetratricopeptide repeat protein 37, WD repeat-containing protein 61
著者Koegel, A, Keidel, A, Bonneau, F, Schaefer, I.B, Conti, E.
登録日2021-11-29
公開日2022-02-02
最終更新日2024-07-17
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献The human SKI complex regulates channeling of ribosome-bound RNA to the exosome via an intrinsic gatekeeping mechanism.
Mol.Cell, 82, 2022
7QIO
DownloadVisualize
BU of 7qio by Molmil
Homology model of myosin neck domain in skeletal sarcomere
分子名称: Myosin light chain 1/3, skeletal muscle isoform, Myosin regulatory light chain 2, ...
著者Wang, Z, Grange, M, Pospich, S, Wagner, T, Kho, A.L, Gautel, M, Raunser, S.
登録日2021-12-15
公開日2022-02-16
最終更新日2024-07-17
実験手法ELECTRON MICROSCOPY (9 Å)
主引用文献Structures from intact myofibrils reveal mechanism of thin filament regulation through nebulin.
Science, 375, 2022
7QDY
DownloadVisualize
BU of 7qdy by Molmil
RNA-bound human SKI complex
分子名称: Helicase SKI2W, RNA (5'-R(P*UP*UP*UP*UP*UP*U)-3'), Tetratricopeptide repeat protein 37, ...
著者Koegel, A, Keidel, A, Bonneau, F, Schaefer, I.B, Conti, E.
登録日2021-12-01
公開日2022-02-09
最終更新日2024-07-17
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献The human SKI complex regulates channeling of ribosome-bound RNA to the exosome via an intrinsic gatekeeping mechanism.
Mol.Cell, 82, 2022
8BQ5
DownloadVisualize
BU of 8bq5 by Molmil
Cryo-EM structure of the Arabidopsis thaliana I+III2 supercomplex (Complete conformation 1 composition)
分子名称: 2,3-DIMETHOXY-5-METHYL-6-(3,11,15,19-TETRAMETHYL-EICOSA-2,6,10,14,18-PENTAENYL)-[1,4]BENZOQUINONE, AT3G07480.1, Acyl carrier protein 1, ...
著者Klusch, N, Kuehlbrandt, W.
登録日2022-11-18
公開日2023-03-22
最終更新日2024-10-09
実験手法ELECTRON MICROSCOPY (2.73 Å)
主引用文献Cryo-EM structure of the respiratory I + III 2 supercomplex from Arabidopsis thaliana at 2 angstrom resolution.
Nat.Plants, 9, 2023
7QIN
DownloadVisualize
BU of 7qin by Molmil
In situ structure of actomyosin complex in skeletal sarcomere
分子名称: ADENOSINE-5'-DIPHOSPHATE, Actin, alpha skeletal muscle, ...
著者Wang, Z, Grange, M, Pospich, S, Wagner, T, Kho, A.L, Gautel, M, Raunser, S.
登録日2021-12-15
公開日2022-02-16
最終更新日2022-03-02
実験手法ELECTRON MICROSCOPY (6.6 Å)
主引用文献Structures from intact myofibrils reveal mechanism of thin filament regulation through nebulin.
Science, 375, 2022
8CDK
DownloadVisualize
BU of 8cdk by Molmil
CAND1 b-hairpin++-SCF-SKP2 CAND1 partly engaged SCF partly rocked
分子名称: Cullin-1, Cullin-associated NEDD8-dissociated protein 1, E3 ubiquitin-protein ligase RBX1, ...
著者Baek, K, Schulman, B.A.
登録日2023-01-31
公開日2023-04-19
最終更新日2025-07-09
実験手法ELECTRON MICROSCOPY (3.32 Å)
主引用文献Systemwide disassembly and assembly of SCF ubiquitin ligase complexes.
Cell, 186, 2023
8CDJ
DownloadVisualize
BU of 8cdj by Molmil
CAND1 b-hairpin++-SCF-SKP2 CAND1 rolling SCF engaged
分子名称: Cullin-1, Cullin-associated NEDD8-dissociated protein 1, E3 ubiquitin-protein ligase RBX1, ...
著者Baek, K, Schulman, B.A.
登録日2023-01-31
公開日2023-04-19
最終更新日2025-07-09
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Systemwide disassembly and assembly of SCF ubiquitin ligase complexes.
Cell, 186, 2023
7QIM
DownloadVisualize
BU of 7qim by Molmil
In situ structure of nebulin bound to actin filament in skeletal sarcomere
分子名称: ACTS protein, ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
著者Wang, Z, Grange, M, Pospich, S, Wagner, T, Kho, A.L, Gautel, M, Raunser, S.
登録日2021-12-15
公開日2022-03-16
実験手法ELECTRON MICROSCOPY (4.5 Å)
主引用文献Structures from intact myofibrils reveal mechanism of thin filament regulation through nebulin.
Science, 375, 2022
8CEI
DownloadVisualize
BU of 8cei by Molmil
Succinyl-CoA Reductase from Clostridium kluyveri (SucD)
分子名称: Succinate-semialdehyde dehydrogenase (acetylating)
著者Pfister, P, Diehl, C, Erb, T.J.
登録日2023-02-02
公開日2023-05-31
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Enhancing the Substrate Specificity of Clostridium Succinyl-CoA Reductase for Synthetic Biology and Biocatalysis.
Biochemistry, 62, 2023
8CEJ
DownloadVisualize
BU of 8cej by Molmil
Succinyl-CoA Reductase from Clostridium kluyveri (SucD) with Mesaconyl-C1-CoA
分子名称: (2E)-2-METHYLBUT-2-ENEDIOIC ACID, Mesaconyl Coenzme A, Succinate-semialdehyde dehydrogenase (acetylating)
著者Pfister, P, Diehl, C, Erb, T.J.
登録日2023-02-02
公開日2023-05-31
最終更新日2024-11-20
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Enhancing the Substrate Specificity of Clostridium Succinyl-CoA Reductase for Synthetic Biology and Biocatalysis.
Biochemistry, 62, 2023
8CEK
DownloadVisualize
BU of 8cek by Molmil
Succinyl-CoA Reductase from Clostridium kluyveri (SucD) with NADPH
分子名称: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, Succinate-semialdehyde dehydrogenase (acetylating)
著者Pfister, P, Diehl, C, Erb, T.J.
登録日2023-02-02
公開日2023-05-31
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Enhancing the Substrate Specificity of Clostridium Succinyl-CoA Reductase for Synthetic Biology and Biocatalysis.
Biochemistry, 62, 2023

238582

件を2025-07-09に公開中

PDB statisticsPDBj update infoContact PDBjnumon