PDB: 45817 件ウェブページステータス検索Chemie searchBIRD

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7SVB	APE1 exonuclease substrate complex with 8oxoG opposite C 分子名称: DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*(8OG))-3'), DNA (5'-D(*GP*GP*AP*TP*CP*CP*GP*TP*CP*GP*AP*CP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(P*TP*CP*GP*AP*CP*GP*GP*AP*TP*CP*C)-3'), ... 著者 Whitaker, A.W, Freudenthal, B.D. 登録日 2021-11-18 公開日 2022-09-07 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.24 Å) 主引用文献 Processing oxidatively damaged bases at DNA strand breaks by APE1. Nucleic Acids Res., 50, 2022
1XXH	ATPgS Bound E. Coli Clamp Loader Complex 分子名称: DNA polymerase III subunit gamma, DNA polymerase III, delta prime subunit, ... 著者 Kazmirski, S.L, Podobnik, M, Weitze, T.F, O'Donnell, M, Kuriyan, J. 登録日 2004-11-05 公開日 2004-12-07 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (3.45 Å) 主引用文献 Structural analysis of the inactive state of the Escherichia coli DNA polymerase clamp-loader complex Proc.Natl.Acad.Sci.USA, 101, 2004
6IRQ	Complexed crystal structure of PaSSB with ssDNA dT25 at 1.91 angstrom resolution 分子名称: DNA (25-MER), Single-stranded DNA-binding protein 著者 Huang, Y.H, Huang, C.Y. 登録日 2018-11-14 公開日 2019-12-11 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (1.91 Å) 主引用文献 Characterization of an SSB-dT25 complex: structural insights into the S-shaped ssDNA binding conformation. Rsc Adv, 9, 2019
6IJU	The DNA binding domain of a response regulator ArlR from Staphylococcus aureus 分子名称: DNA-binding response regulator 著者 Hui, Y, Qing, W. 登録日 2018-10-12 公開日 2019-10-16 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 The DNA-binding properties and the structure of the DNA-binding domain of the response regulator ArlR from Staphylococcus aureus To Be Published
8FII	Wild type APOBEC3A in complex with TT(FdZ)-hairpin inhibitor (crystal form 1) 分子名称: DNA (5'-D(P*GP*CP*GP*CP*TP*TP*(UFP)P*GP*CP*GP*C)-3'), DNA dC->dU-editing enzyme APOBEC-3A, PHOSPHATE ION, ... 著者 Harjes, S, Jameson, G.B, Harjes, E, Filichev, V.V, Kurup, H.M. 登録日 2022-12-16 公開日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.94 Å) 主引用文献 DNA-based inhibitors restrict mutagenic activity of APOBEC3 in cells To Be Published
8FIJ	Wild type APOBEC3A in complex with TT(FdZ)-hairpin inhibitor (crystal form 2) 分子名称: DNA (5'-D(*GP*CP*GP*CP*TP*TP*(UFP)P*GP*CP*GP*CP*T)-3'), DNA dC->dU-editing enzyme APOBEC-3A, PHOSPHATE ION, ... 著者 Harjes, S, Jameson, G.B, Harjes, E, Filichev, V.V, Kurup, H.M. 登録日 2022-12-16 公開日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.799 Å) 主引用文献 DNA-based inhibitors restrict mutagenic activity of APOBEC3 in cells To Be Published
6SJE	Cryo-EM structure of the RecBCD Chi partially-recognised complex 分子名称: DNA fork substrate, RecBCD enzyme subunit RecB, RecBCD enzyme subunit RecC, ... 著者 Cheng, K, Wilkinson, M, Wigley, D.B. 登録日 2019-08-13 公開日 2020-01-01 最終更新日 2024-05-22 実験手法 ELECTRON MICROSCOPY (4.1 Å) 主引用文献 A conformational switch in response to Chi converts RecBCD from phage destruction to DNA repair. Nat.Struct.Mol.Biol., 27, 2020
3SR2	Crystal Structure of Human XLF-XRCC4 Complex 分子名称: DNA repair protein XRCC4, Non-homologous end-joining factor 1 著者 Hammel, M, Classen, S, Tainer, J.A. 登録日 2011-07-06 公開日 2011-07-20 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (3.9708 Å) 主引用文献 XRCC4 Protein Interactions with XRCC4-like Factor (XLF) Create an Extended Grooved Scaffold for DNA Ligation and Double Strand Break Repair. J.Biol.Chem., 286, 2011
8J70	Native SAND domain of protein SP140 with DNA 分子名称: DNA (5'-D(*GP*GP*GP*CP*GP*GP*CP*CP*GP*CP*CP*CP*T)-3'), Nuclear body protein SP140, selenourea 著者 Li, H.T, Liu, W.Q. 登録日 2023-04-26 公開日 2024-05-01 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 Molecular basis for Speckled protein SP140 bivalent recognition of histone H3 and DNA. To Be Published
6T7Y	Structure of PCNA bound to cPIP motif of DP2 from P. abyssi 分子名称: DNA polymerase sliding clamp, cPIP motif from the DP2 large subunit of PolD 著者 Madru, C, Raia, P, Hugonneau Beaufet, I, Delarue, M, Carroni, M, Sauguet, L. 登録日 2019-10-23 公開日 2020-03-04 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Structural basis for the increased processivity of D-family DNA polymerases in complex with PCNA. Nat Commun, 11, 2020
6T2V	Cryo-EM structure of the RecBCD in complex with Chi-plus2 substrate 分子名称: DNA (Chi-plus2), RecBCD enzyme subunit RecB, RecBCD enzyme subunit RecC, ... 著者 Cheng, K, Wilkinson, M, Wigley, D.B. 登録日 2019-10-09 公開日 2020-01-01 最終更新日 2024-05-22 実験手法 ELECTRON MICROSCOPY (3.8 Å) 主引用文献 A conformational switch in response to Chi converts RecBCD from phage destruction to DNA repair. Nat.Struct.Mol.Biol., 27, 2020
6T7X	Crystal structure of PCNA from P. abyssi 分子名称: DNA polymerase sliding clamp 著者 Madru, C, Raia, P, Hugonneau Beaufet, I, Delarue, M, Carroni, M, Sauguet, L. 登録日 2019-10-23 公開日 2020-03-04 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Structural basis for the increased processivity of D-family DNA polymerases in complex with PCNA. Nat Commun, 11, 2020
6T2U	Cryo-EM structure of the RecBCD in complex with Chi-minus2 substrate 分子名称: DNA (Chi-minus2), RecBCD enzyme subunit RecB, RecBCD enzyme subunit RecC, ... 著者 Cheng, K, Wilkinson, M, Wigley, D.B. 登録日 2019-10-09 公開日 2020-01-01 最終更新日 2024-05-22 実験手法 ELECTRON MICROSCOPY (3.6 Å) 主引用文献 A conformational switch in response to Chi converts RecBCD from phage destruction to DNA repair. Nat.Struct.Mol.Biol., 27, 2020
2VE8	Xray structure of FtsK gamma domain (P. aeruginosa) 分子名称: DNA TRANSLOCASE FTSK 著者 Lowe, J, Allen, M.A, Sherratt, D.J. 登録日 2007-10-17 公開日 2008-09-09 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (1.4 Å) 主引用文献 Molecular Mechanism of Sequence-Directed DNA Loading and Translocation by Ftsk. Mol.Cell, 31, 2008
5FF8	TDG enzyme-product complex 分子名称: DNA, G/T mismatch-specific thymine DNA glycosylase 著者 Pozharski, E, Malik, S.S, Drohat, A.C. 登録日 2015-12-18 公開日 2016-09-28 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Structural basis of damage recognition by thymine DNA glycosylase: Key roles for N-terminal residues. Nucleic Acids Res., 44, 2016
7RQT	THE B-DNA DODECAMER With HIGH RESOLUTION 分子名称: DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'), MAGNESIUM ION 著者 Chen, C, Huang, Z. 登録日 2021-08-08 公開日 2022-08-17 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.26 Å) 主引用文献 2'-beta-Selenium Atom on Thymidine to Control beta-Form DNA Conformation and Large Crystal Formation Cryst.Growth Des., 2022
5LKQ	Protease domain of RadA 分子名称: DNA repair protein RadA 著者 Rapisarda, C, Fronzes, R. 登録日 2016-07-22 公開日 2017-06-07 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.498 Å) 主引用文献 Bacterial RadA is a DnaB-type helicase interacting with RecA to promote bidirectional D-loop extension. Nat Commun, 8, 2017
327D	CRYSTAL STRUCTURES OF D(GM5CGM5CGCGCGC) 分子名称: DNA (5'-D(*GP*(5CM)P*GP*(5CM)P*GP*CP*GP*CP*GP*C)-3') 著者 Tippin, D.B, Ramakrishnan, B, Sundaralingam, M. 登録日 1997-03-17 公開日 1997-05-22 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.94 Å) 主引用文献 Methylation of the Z-DNA decamer d(GC)5 potentiates the formation of A-DNA: crystal structure of d(Gm5CGm5CGCGCGC). J.Mol.Biol., 270, 1997
7Z13	S. cerevisiae CMGE dimer nucleating origin DNA melting 分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Cell division control protein 45, ... 著者 Lewis, J.S, Sousa, J.S, Costa, A. 登録日 2022-02-24 公開日 2022-06-15 最終更新日 2024-07-17 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Mechanism of replication origin melting nucleated by CMG helicase assembly. Nature, 606, 2022
6B1R	Hydrogen Bonding Complementary, not size complementarity is key in the formation of the double helix 分子名称: DNA (5'-D(*CP*TP*TP*AP*TP*(1WA)P*(1WA)P*(1WA))-3'), DNA (5'-D(P*(IGU)P*(IGU)P*(IGU)P*AP*TP*AP*AP*G)-3'), Reverse transcriptase 著者 Singh, I, Georgiadis, M.M. 登録日 2017-09-18 公開日 2018-09-19 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (1.69 Å) 主引用文献 "Skinny" and "Fat" DNA: Two New Double Helices. J. Am. Chem. Soc., 140, 2018
6B1Q	Hydrogen Bonding Complementary, not size complementarity is key in the formation of the double helix 分子名称: DNA (5'-D(*CP*TP*TP*AP*TP*(CJ1)P*(CJ1)P*(CJ1))-3'), DNA (5'-D(P*(1AP)P*(1AP)P*(1AP)P*AP*TP*AP*AP*G)-3'), Reverse transcriptase 著者 Singh, I, Georgiadis, M.M. 登録日 2017-09-18 公開日 2018-09-19 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 "Skinny" and "Fat" DNA: Two New Double Helices. J. Am. Chem. Soc., 140, 2018
5HF7	TDG enzyme-substrate complex 分子名称: DNA (28-MER), G/T mismatch-specific thymine DNA glycosylase 著者 Pozharski, E, Malik, S.S, Drohat, A.C. 登録日 2016-01-06 公開日 2016-09-28 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (1.54 Å) 主引用文献 Structural basis of damage recognition by thymine DNA glycosylase: Key roles for N-terminal residues. Nucleic Acids Res., 44, 2016
6TUR	human XPG, Apo1 form 分子名称: DNA repair protein complementing XP-G cells,DNA repair protein complementing XP-G cells 著者 Ruiz, F.M, Fernandez-Tornero, C. 登録日 2020-01-08 公開日 2020-09-16 最終更新日 2020-10-07 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 The crystal structure of human XPG, the xeroderma pigmentosum group G endonuclease, provides insight into nucleotide excision DNA repair. Nucleic Acids Res., 48, 2020
2R6C	Crystal Form BH2 分子名称: DnaG Primase, Helicase Binding Domain, Replicative helicase 著者 Bailey, S, Eliason, W.K, Steitz, T.A. 登録日 2007-09-05 公開日 2008-06-10 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (4 Å) 主引用文献 Structure of hexameric DnaB helicase and its complex with a domain of DnaG primase Science, 318, 2007
2R6A	Crystal Form BH1 分子名称: DnaG Primase, Helicase Binding Domain, Replicative helicase, ... 著者 Bailey, S, Eliason, W.K, Steitz, T.A. 登録日 2007-09-05 公開日 2007-11-06 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Structure of hexameric DnaB helicase and its complex with a domain of DnaG primase Science, 318, 2007

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