Loading
PDBj
メニューPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

6D6M
DownloadVisualize
BU of 6d6m by Molmil
The structure of ligand binding domain of LasR in complex with TP-1 homolog, compound 15
分子名称: 2,4-dibromo-6-{[(2-nitrobenzene-1-carbonyl)amino]methyl}phenyl 4-bromobenzoate, Transcriptional activator protein LasR
著者Dong, S.H, Nair, S.K.
登録日2018-04-21
公開日2018-08-08
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structural and Biochemical Studies of Non-native Agonists of the LasR Quorum-Sensing Receptor Reveal an L3 Loop "Out" Conformation for LasR.
Cell Chem Biol, 25, 2018
8YU4
DownloadVisualize
BU of 8yu4 by Molmil
Structure of cyclohexanone monooxygenase mutant from Acinetobacter calcoaceticus
分子名称: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, FLAVIN-ADENINE DINUCLEOTIDE, Putative flavin-binding monooxygenase
著者Qiang, G, Zheng, Y.C, Feng, L, Yu, H.L.
登録日2024-03-26
公開日2025-03-26
実験手法X-RAY DIFFRACTION (2.02 Å)
主引用文献Loop Engineering Facilitates the Nicotinamide Cofactors Utilization of BVMOs
To Be Published
7D7V
DownloadVisualize
BU of 7d7v by Molmil
Crystal Structure of the Domain1 of NAD+ Riboswitch with nicotinamide adenine dinucleotide (NAD+) and U1A protein
分子名称: 17delU1A (58-MER), GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
著者Chen, H, Ren, A.M.
登録日2020-10-06
公開日2020-11-25
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Structural distinctions between NAD+ riboswitch domains 1 and 2 determine differential folding and ligand binding.
Nucleic Acids Res., 48, 2020
6N3P
DownloadVisualize
BU of 6n3p by Molmil
Crosslinked AcpP=FabZ complex from E. coli Type II FAS
分子名称: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ, Acyl carrier protein, N~3~-{(2R)-4-[(dihydroxyphosphanyl)oxy]-2-hydroxy-3,3-dimethylbutanoyl}-N-(3-{[(1Z)-pent-1-en-1-yl]sulfonyl}propyl)-beta-alaninamide
著者Smith, J.L, Dodge, G.J.
登録日2018-11-15
公開日2019-03-13
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structural and dynamical rationale for fatty acid unsaturation inEscherichia coli.
Proc. Natl. Acad. Sci. U.S.A., 116, 2019
4OBA
DownloadVisualize
BU of 4oba by Molmil
Co-crystal structure of MDM2 with Inhibitor Compound 4
分子名称: E3 ubiquitin-protein ligase Mdm2, [(2R,5R,6R)-4-[(1S)-2-(tert-butylsulfonyl)-1-cyclopropylethyl]-6-(3-chlorophenyl)-5-(4-chlorophenyl)-3-oxomorpholin-2-yl]acetic acid
著者Shaffer, P.L, Huang, X, Yakowec, P, Long, A.M.
登録日2014-01-07
公開日2014-03-19
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.602 Å)
主引用文献Selective and Potent Morpholinone Inhibitors of the MDM2-p53 Protein-Protein Interaction.
J.Med.Chem., 57, 2014
2BKF
DownloadVisualize
BU of 2bkf by Molmil
Structure of the PB1 domain of NBR1
分子名称: GLYCEROL, ZINC-FINGER PROTEIN NBR1 (NEXT TO BREAST CANCER 1)
著者Mueller, S, Kursula, I, Wilmanns, M.
登録日2005-02-16
公開日2006-01-18
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.56 Å)
主引用文献Crystal Structure of the Pb1 Domain of Nbr1
FEBS Lett., 580, 2006
1BKB
DownloadVisualize
BU of 1bkb by Molmil
INITIATION FACTOR 5A FROM ARCHEBACTERIUM PYROBACULUM AEROPHILUM
分子名称: TRANSLATION INITIATION FACTOR 5A
著者Peat, T.S, Newman, J, Waldo, G.S, Berendzen, J, Terwilliger, T.C.
登録日1998-07-05
公開日1998-11-04
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Structure of translation initiation factor 5A from Pyrobaculum aerophilum at 1.75 A resolution.
Structure, 6, 1998
5W5D
DownloadVisualize
BU of 5w5d by Molmil
Crystal structure of the primed SNARE-Complexin-Synaptotagmin-1 C2B complex
分子名称: Complexin-1, MAGNESIUM ION, Synaptosomal-associated protein 25, ...
著者Zhou, Q, Brunger, A.T.
登録日2017-06-14
公開日2017-08-23
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.496 Å)
主引用文献The primed SNARE-complexin-synaptotagmin complex for neuronal exocytosis.
Nature, 548, 2017
5AR4
DownloadVisualize
BU of 5ar4 by Molmil
RIP2 Kinase Catalytic Domain (1 - 310) complex with SB-203580
分子名称: 4-[5-(4-FLUORO-PHENYL)-2-(4-METHANESULFINYL-PHENYL)-3H-IMIDAZOL-4-YL]-PYRIDINE, RECEPTOR-INTERACTING SERINE/THREONINE-PROTEIN KINASE 2
著者Charnley, A.K, Convery, M.A, Lakdawala Shah, A, Jones, E, Hardwicke, P, Bridges, A, Votta, B.J, Gough, P.J, Marquis, R.W, Bertin, J, Casillas, L.
登録日2015-09-24
公開日2015-10-21
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Crystal Structures of Human Rip2 Kinase Catalytic Domain Complexed with ATP-Competitive Inhibitors: Foundations for Understanding Inhibitor Selectivity.
Bioorg.Med.Chem., 23, 2015
4Y9F
DownloadVisualize
BU of 4y9f by Molmil
Crystal structure of V30M mutated transthyretin with bromide in complex with gamma-mangostin
分子名称: 1,3,6,7-tetrahydroxy-2,8-bis(3-methylbut-2-en-1-yl)-9H-xanthen-9-one, BROMIDE ION, Transthyretin
著者Yokoyama, T, Mizuguchi, M.
登録日2015-02-17
公開日2015-09-09
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Discovery of gamma-Mangostin as an Amyloidogenesis Inhibitor
Sci Rep, 5, 2015
6DFW
DownloadVisualize
BU of 6dfw by Molmil
TCR 8F10 in complex with IAg7-p8G9E
分子名称: 8F10 alpha chain, 8F10 beta chain, H-2 class II histocompatibility antigen, ...
著者Wang, Y, Dai, S.
登録日2018-05-15
公開日2019-04-17
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献How C-terminal additions to insulin B-chain fragments create superagonists for T cells in mouse and human type 1 diabetes.
Sci Immunol, 4, 2019
5ARF
DownloadVisualize
BU of 5arf by Molmil
SMYD2 in complex with small molecule inhibitor compound-2
分子名称: N-LYSINE METHYLTRANSFERASE SMYD2, N-[3-(4-CHLOROPHENYL)-1-{N'-CYANO-N-[3-(DIFLUOROMETHOXY)PHENYL]CARBAMIMIDOYL}-4,5-DIHYDRO-1H- PYRAZOL-4-YL]-N-ETHYL-2-HYDROXYACETAMIDE, S-ADENOSYLMETHIONINE, ...
著者Hillig, R.C, Badock, V, Barak, N, Stellfeld, T, Eggert, E, ter Laak, A, Weiske, J, Christ, C.D, Koehr, S, Stoeckigt, D, Mowat, J, Mueller, T, Fernandez-Montalvan, A.E, Hartung, I.V, Stresemann, C, Brumby, T, Weinmann, H.
登録日2015-09-24
公開日2016-04-27
最終更新日2024-11-13
実験手法X-RAY DIFFRACTION (1.92 Å)
主引用文献Discovery and Characterization of a Highly Potent and Selective Aminopyrazoline-Based in Vivo Probe (Bay-598) for the Protein Lysine Methyltransferase Smyd2.
J.Med.Chem., 59, 2016
6N93
DownloadVisualize
BU of 6n93 by Molmil
Methylmalonyl-CoA decarboxylase in complex with 2-nitronate-propionyl-oxa(dethia)-CoA
分子名称: (2E)-2-(hydroxyimino)propanoic acid, IMIDAZOLE, Methylmalonyl-CoA decarboxylase, ...
著者Stunkard, L.M, Dixon, A.D, Huth, T.J, Lohman, J.R.
登録日2018-11-30
公開日2019-04-10
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Sulfonate/Nitro Bearing Methylmalonyl-Thioester Isosteres Applied to Methylmalonyl-CoA Decarboxylase Structure-Function Studies.
J. Am. Chem. Soc., 141, 2019
5AM6
DownloadVisualize
BU of 5am6 by Molmil
Native FGFR1 with an inhibitor
分子名称: 4-amino-5-fluoro-3-[5-(4-methylpiperazin-1-yl)-1H-benzimidazol-2-yl]quinolin-2(1H)-one, CHLORIDE ION, FIBROBLAST GROWTH FACTOR RECEPTOR 1
著者Bunney, T.D, Wan, S, Thiyagarajan, N, Sutto, L, Williams, S.V, Ashford, P, Koss, H, Knowles, M.A, Gervasio, F.L, Coveney, P.V, Katan, M.
登録日2015-03-10
公開日2015-03-18
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.96 Å)
主引用文献The Effect of Mutations on Drug Sensitivity and Kinase Activity of Fibroblast Growth Factor Receptors: A Combined Experimental and Theoretical Study
Ebiomedicine, 2, 2015
6UZP
DownloadVisualize
BU of 6uzp by Molmil
HLA-B*15:01 complexed with a synthetic peptide
分子名称: 1,2-ETHANEDIOL, ACETATE ION, Beta-2-microglobulin, ...
著者Schutte, R.J, Li, D, Ostrov, D.A.
登録日2019-11-15
公開日2020-11-18
最終更新日2024-11-20
実験手法X-RAY DIFFRACTION (2.08 Å)
主引用文献HLA-B*15:01 complexed with a synthetic peptide
To Be Published
2C1X
DownloadVisualize
BU of 2c1x by Molmil
Structure and activity of a flavonoid 3-O glucosyltransferase reveals the basis for plant natural product modification
分子名称: 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, UDP-GLUCOSE FLAVONOID 3-O GLYCOSYLTRANSFERASE, URIDINE-5'-DIPHOSPHATE
著者Offen, W, Martinez-Fleites, C, Kiat-Lim, E, Yang, M, Davis, B.G, Tarling, C.A, Ford, C.M, Bowles, D.J, Davies, G.J.
登録日2005-09-22
公開日2006-01-09
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structure of a Flavonoid Glucosyltransferase Reveals the Basis for Plant Natural Product Modification.
Embo J., 25, 2006
1BX8
DownloadVisualize
BU of 1bx8 by Molmil
HIRUSTASIN FROM HIRUDO MEDICINALIS AT 1.4 ANGSTROMS
分子名称: HIRUSTASIN, SULFATE ION
著者Uson, I, Sheldrick, G.M, De La Fortelle, E, Bricogne, G, Di Marco, S, Priestle, J.P, Gruetter, M.G, Mittl, P.R.E.
登録日1998-10-14
公開日1999-04-27
最終更新日2024-11-20
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献The 1.2 A crystal structure of hirustasin reveals the intrinsic flexibility of a family of highly disulphide-bridged inhibitors.
Structure Fold.Des., 7, 1999
6DHQ
DownloadVisualize
BU of 6dhq by Molmil
Bovine glutamate dehydrogenase complexed with NADPH, glutamate, and GTP
分子名称: GLUTAMIC ACID, GUANOSINE-5'-TRIPHOSPHATE, Glutamate dehydrogenase 1, ...
著者Smith, T.J.
登録日2018-05-20
公開日2018-07-25
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structures of bovine glutamate dehydrogenase complexes elucidate the mechanism of purine regulation.
J. Mol. Biol., 307, 2001
4Y5P
DownloadVisualize
BU of 4y5p by Molmil
Endothiapepsin in complex with fragment 338
分子名称: 2-(1H-imidazol-1-yl)-N-(trans-4-methylcyclohexyl)acetamide, ACETATE ION, DIMETHYL SULFOXIDE, ...
著者Fu, K, Heine, A, Klebe, G.
登録日2015-02-11
公開日2016-03-02
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (1.229 Å)
主引用文献Crystallographic Fragment Screening of an Entire Library
To Be Published
2C0H
DownloadVisualize
BU of 2c0h by Molmil
X-ray structure of beta-mannanase from blue mussel Mytilus edulis
分子名称: MANNAN ENDO-1,4-BETA-MANNOSIDASE, SULFATE ION
著者Larsson, A.M, Anderson, L, Xu, B, Munoz, I.G, Uson, I, Janson, J.-C, Stalbrand, H, Stahlberg, J.
登録日2005-09-02
公開日2006-02-22
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Three-Dimensional Crystal Structure and Enzymic Characterization of Beta-Mannanase Man5A from Blue Mussel Mytilus Edulis.
J.Mol.Biol., 357, 2006
2BHE
DownloadVisualize
BU of 2bhe by Molmil
HUMAN CYCLIN DEPENDENT PROTEIN KINASE 2 IN COMPLEX WITH THE INHIBITOR 5-BROMO-INDIRUBINE
分子名称: (2Z)-5'-BROMO-2,3'-BIINDOLE-2',3(1H,1'H)-DIONE AMMONIATE, CELL DIVISION PROTEIN KINASE 2
著者Schaefer, M, Jautelat, R, Brumby, T, Briem, H, Eisenbrand, G, Schwahn, S, Krueger, M, Luecking, U, Prien, O, Siemeister, G.
登録日2005-01-10
公開日2005-03-09
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献From the Insoluble Dye Indirubin Towards Highly Active, Soluble Cdk2-Inhibitors
Chembiochem, 6, 2005
6V6V
DownloadVisualize
BU of 6v6v by Molmil
Crystal structure of oncogenic RhoA mutant G14V complexed with GDP
分子名称: 1,4-DIETHYLENE DIOXIDE, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
著者Lin, Y, Zheng, Y.
登録日2019-12-06
公開日2020-12-23
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Structure of an inactive conformation of GTP-bound RhoA GTPase.
Structure, 29, 2021
4Y7R
DownloadVisualize
BU of 4y7r by Molmil
Crystal structure of WDR5 in complex with MYC MbIIIb peptide
分子名称: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, MYC MbIIIb peptide, ...
著者Sun, Q, Phan, J, Olejniczak, E.T, Thomas, L.R, Fesik, S.W, Tansey, W.P.
登録日2015-02-16
公開日2015-04-15
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.898 Å)
主引用文献Interaction with WDR5 Promotes Target Gene Recognition and Tumorigenesis by MYC.
Mol.Cell, 58, 2015
5AR3
DownloadVisualize
BU of 5ar3 by Molmil
RIP2 Kinase Catalytic Domain (1 - 310) complex with AMP-PCP
分子名称: MAGNESIUM ION, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER, RECEPTOR-INTERACTING SERINE/THREONINE-PROTEIN KINASE 2
著者Charnley, A.K, Convery, M.A, Lakdawala Shah, A, Jones, E, Hardwicke, P, Bridges, A, Votta, B.J, Gough, P.J, Marquis, R.W, Bertin, J, Casillas, L.
登録日2015-09-23
公開日2015-10-21
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (3.23 Å)
主引用文献Crystal Structures of Human Rip2 Kinase Catalytic Domain Complexed with ATP-Competitive Inhibitors: Foundations for Understanding Inhibitor Selectivity.
Bioorg.Med.Chem., 23, 2015
6CGY
DownloadVisualize
BU of 6cgy by Molmil
Structure of the Quorum Quenching lactonase from Alicyclobacillus acidoterrestris bound to a phosphate anion
分子名称: 1,2-ETHANEDIOL, Beta-lactamase, COBALT (II) ION, ...
著者Bergonzi, C, Schwab, M, Naik, T, Daude, D, Chabriere, E, Elias, M.
登録日2018-02-21
公開日2018-08-15
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Structural and Biochemical Characterization of AaL, a Quorum Quenching Lactonase with Unusual Kinetic Properties.
Sci Rep, 8, 2018

245011

件を2025-11-19に公開中

PDB statisticsPDBj update infoContact PDBjnumon