PDB: 82203 件ウェブページステータス検索Chemie searchBIRD

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5L8M	Wild-type PAS-GAF fragment from Deinococcus radiodurans Bphp collected at LCLS 分子名称: 3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium -2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3- yl]propanoic acid, ACETATE ION, Bacteriophytochrome 著者 Claesson, E, Takala, H, Edlund, P, Henry, L, Dods, R, Schmidt, M, Westenhoff, S. 登録日 2016-06-08 公開日 2016-10-26 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 The room temperature crystal structure of a bacterial phytochrome determined by serial femtosecond crystallography. Sci Rep, 6, 2016
7JRI	High-resolution Crystal Structures of Transient Intermediates in the Phytochrome Photocycle, 33 ms structure 分子名称: 3-[2-[[5-[[(3E,4S)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrol-2-yl]methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-1H-pyrrol-2-yl]methyl]-5-[(4-ethyl-3-methyl-5-oxidanylidene-pyrrol-2-yl)methyl]-4-methyl-1H-pyrrol-3-yl]propanoic acid, BENZAMIDINE, Photoreceptor-histidine kinase BphP 著者 Schmidt, M, Stojkovic, E. 登録日 2020-08-12 公開日 2021-04-07 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 High-resolution crystal structures of transient intermediates in the phytochrome photocycle. Structure, 29, 2021
7JR5	Real Time Reaction Intermediates in Stigmatella Bacteriophytochrome P2 分子名称: 3-[2-[[5-[(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-yl)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-1~{H}-pyrrol-2-yl]methyl]-5-[[(3~{S})-4-ethyl-3-methyl-2-oxidanylidene-1,3-dihydropyrrol-5-yl]methyl]-4-methyl-1~{H}-pyrrol-3-yl]propanoic acid, BENZAMIDINE, Photoreceptor-histidine kinase BphP 著者 Schmidt, M. 登録日 2020-08-11 公開日 2021-10-06 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 High-resolution crystal structures of transient intermediates in the phytochrome photocycle. Structure, 29, 2021
5Y48	Crystal structure of the complex of Ribosome inactivating protein from Momordica balsamina with Pyrimidine-2,4-dione at 1.70 Angstrom resolution 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Ribosome inactivating protein, URACIL 著者 Singh, P.K, Pandey, S, Iqbal, N, Kaur, P, Sharma, S, Singh, T.P. 登録日 2017-08-01 公開日 2017-09-20 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Binding and structural studies of the complexes of type 1 ribosome inactivating protein from Momordica balsamina with uracil and uridine. Proteins, 87, 2019
3FN1	E2-RING expansion of the NEDD8 cascade confers specificity to cullin modification. 分子名称: NEDD8-activating enzyme E1 catalytic subunit, NEDD8-conjugating enzyme UBE2F 著者 Huang, D.T, Ayrault, O, Hunt, H.W, Taherbhoy, A.M, Duda, D.M, Scott, D.C, Borg, L.A, Neale, G, Murray, P.J, Roussel, M.F, Schulman, B.A. 登録日 2008-12-22 公開日 2009-03-17 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 E2-RING expansion of the NEDD8 cascade confers specificity to cullin modification Mol.Cell, 33, 2009
5MSV	Structure of the phosphopantetheine modified PCP-R didomain of carboxylic acid reductase (CAR) in complex with NADP 分子名称: 4'-PHOSPHOPANTETHEINE, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, Thioester reductase domain-containing protein 著者 Gahloth, D, Leys, D. 登録日 2017-01-05 公開日 2017-07-05 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.34 Å) 主引用文献 Structures of carboxylic acid reductase reveal domain dynamics underlying catalysis. Nat. Chem. Biol., 13, 2017
5YNY	Structure of house dust mite allergen Der F 21 in PEG2KMME 分子名称: Allergen Der f 21 著者 Ng, C.L, Chew, F.T, Pang, S.L, Ho, K.L, Teh, A.H, Waterman, J, Rambo, R, Mathavan, I. 登録日 2017-10-25 公開日 2019-03-13 最終更新日 2024-03-27 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Crystal structure and epitope analysis of house dust mite allergen Der f 21. Sci Rep, 9, 2019
1UC4	Structure of diol dehydratase complexed with (S)-1,2-propanediol 分子名称: AMMONIUM ION, CYANOCOBALAMIN, POTASSIUM ION, ... 著者 Shibata, N, Nakanishi, Y, Fukuoka, M, Yamanishi, M, Yasuoka, N, Toraya, T. 登録日 2003-04-08 公開日 2003-07-22 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Structural rationalization for the lack of stereospecificity in coenzyme B12-dependent diol dehydratase J.BIOL.CHEM., 278, 2003
7CC8	Crystal structure of White Spot Syndrome Virus Thymidylate Synthase - Apo form 分子名称: SULFATE ION, TRIETHYLENE GLYCOL, Thymidylate Synthase 著者 Kumar, S, Panchal, N.V, Shaikh, N, Vasudevan, D. 登録日 2020-06-16 公開日 2020-11-25 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Structure analysis of thymidylate synthase from white spot syndrome virus reveals WSSV-specific structural elements. Int.J.Biol.Macromol., 167, 2021
1XX9	Crystal Structure of the FXIa Catalytic Domain in Complex with EcotinM84R 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Coagulation factor XI, Ecotin 著者 Jin, L, Pandey, P, Babine, R.E, Gorga, J.C, Seidl, K.J, Gelfand, E, Weaver, D.T, Abdel-Meguid, S.S, Strickler, J.E. 登録日 2004-11-04 公開日 2004-11-16 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Crystal Structures of the FXIa Catalytic Domain in Complex with Ecotin Mutants Reveal Substrate-like Interactions J.Biol.Chem., 280, 2005
8OYG	Crystal structure of ASBTNM in complex with pantoate 分子名称: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, CADMIUM ION, PANTOATE, ... 著者 Becker, P, Cameron, A.D. 登録日 2023-05-04 公開日 2023-07-12 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Mechanism of substrate binding and transport in BASS transporters. Biorxiv, 2023
5XAY	Crystal structure of full length tylp, a tetr regulator from streptomyces fradiae 分子名称: Gamma-butyrolactone receptor protein 著者 Ray, S, Panjikar, S, Anand, R. 登録日 2017-03-15 公開日 2017-08-02 最終更新日 2017-09-27 実験手法 X-RAY DIFFRACTION (2.58 Å) 主引用文献 Functional insights into the mode of DNA and ligand binding of the TetR family regulator TylP from Streptomyces fradiae J. Biol. Chem., 292, 2017
1XXF	Crystal Structure of the FXIa Catalytic Domain in Complex with Ecotin Mutant (EcotinP) 分子名称: Coagulation factor XI, Ecotin, SODIUM ION 著者 Jin, L, Pandey, P, Babine, R.E, Gorga, J.C, Seidl, K.J, Gelfand, E, Weaver, D.T, Abdel-Meguid, S.S, Strickler, J.E. 登録日 2004-11-04 公開日 2004-11-16 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Crystal Structures of the FXIa Catalytic Domain in Complex with Ecotin Mutants Reveal Substrate-like Interactions J.Biol.Chem., 280, 2005
7M3I	Structure of SARS-CoV-2 spike protein receptor binding domain in complex with a neutralizing antibody, CV2-75 Fab 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, CV2-75 Fab Heavy chain, CV2-75 Fab Light chain, ... 著者 Hurlburt, N.K, Pancera, M. 登録日 2021-03-18 公開日 2021-05-12 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Isolation and characterization of cross-neutralizing coronavirus antibodies from COVID-19+ subjects. Cell Rep, 36, 2021
7MNG	Crystal Structure of SARS-CoV-2 Main Protease (3CLpro/Mpro) in Complex with Covalent Inhibitor VBY-825 (Partial Occupancy) 分子名称: (2R,3S)-N-cyclopropyl-3-{[(2R)-3-(cyclopropylmethanesulfonyl)-2-{[(1S)-2,2,2-trifluoro-1-(4-fluorophenyl)ethyl]amino}propanoyl]amino}-2-hydroxypentanamide (non-preferred name), 3C-like proteinase, DIMETHYL SULFOXIDE 著者 Andi, B, Kumaran, D, Soares, A.S, Kreitler, D.F, Shi, W, Jakoncic, J, Fuchs, M.R, Keereetaweep, J, Shanklin, J, McSweeney, S. 登録日 2021-04-30 公開日 2021-05-12 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Hepatitis C virus NS3/4A inhibitors and other drug-like compounds as covalent binders of SARS-CoV-2 main protease. Sci Rep, 12, 2022
1XXD	Crystal Structure of the FXIa Catalytic Domain in Complex with mutated Ecotin 分子名称: Coagulation factor XI, Ecotin 著者 Jin, L, Pandey, P, Babine, R.E, Gorga, J.C, Seidl, K.J, Gelfand, E, Weaver, D.T, Abdel-Meguid, S.S, Strickler, J.E. 登録日 2004-11-04 公開日 2004-11-16 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (2.91 Å) 主引用文献 Crystal Structures of the FXIa Catalytic Domain in Complex with Ecotin Mutants Reveal Substrate-like Interactions J.Biol.Chem., 280, 2005
7B62	Crystal structure of SARS-CoV-2 spike protein N-terminal domain in complex with biliverdin 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, BILIVERDINE IX ALPHA, DI(HYDROXYETHYL)ETHER, ... 著者 Pye, V.E, Rosa, A, Roustan, C, Cherepanov, P. 登録日 2020-12-07 公開日 2021-04-28 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.82 Å) 主引用文献 SARS-CoV-2 can recruit a heme metabolite to evade antibody immunity. Sci Adv, 7, 2021
3E4P	Crystal structure of malonate occupied DctB 分子名称: C4-dicarboxylate transport sensor protein dctB, MALONIC ACID, STRONTIUM ION 著者 Zhou, Y.F, Nan, J, Nan, B.Y, Liang, Y.H, Panjikar, S, Su, X.D. 登録日 2008-08-12 公開日 2008-10-21 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 C4-dicarboxylates sensing mechanism revealed by the crystal structures of DctB sensor domain. J.Mol.Biol., 383, 2008
5XAZ	Crystal structure of full length native tylp, a tetr regulator from streptomyces fradiae 分子名称: Gamma-butyrolactone receptor protein 著者 Ray, S, Panjikar, S, Anand, R. 登録日 2017-03-15 公開日 2017-08-02 最終更新日 2024-03-27 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Functional insights into the mode of DNA and ligand binding of the TetR family regulator TylP from Streptomyces fradiae J. Biol. Chem., 292, 2017
1UC5	Structure of diol dehydratase complexed with (R)-1,2-propanediol 分子名称: AMMONIUM ION, CYANOCOBALAMIN, POTASSIUM ION, ... 著者 Shibata, N, Nakanishi, Y, Fukuoka, M, Yamanishi, M, Yasuoka, N, Toraya, T. 登録日 2003-04-08 公開日 2003-07-22 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Structural rationalization for the lack of stereospecificity in coenzyme B12-dependent diol dehydratase J.Biol.Chem., 278, 2003
1ZEL	Crystal structure of RV2827C protein from Mycobacterium tuberculosis 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, ACETATE ION, FORMIC ACID, ... 著者 Janowski, R, Panjikar, S, Mueller-dieckmann, J, Weiss, M.S, TB Structural Genomics Consortium (TBSGC) 登録日 2005-04-19 公開日 2006-05-02 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (1.93 Å) 主引用文献 Structural analysis reveals DNA binding properties of Rv2827c, a hypothetical protein from Mycobacterium tuberculosis. J Struct Funct Genomics, 10, 2009
1TLI	THERMOLYSIN (2% ISOPROPANOL SOAKED CRYSTALS) 分子名称: CALCIUM ION, DIMETHYL SULFOXIDE, THERMOLYSIN, ... 著者 English, A.C, Done, S.H, Groom, C.R, Hubbard, R.E. 登録日 1998-10-27 公開日 2000-02-18 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.05 Å) 主引用文献 Locating interaction sites on proteins: the crystal structure of thermolysin soaked in 2% to 100% isopropanol. Proteins, 37, 1999
1D07	Hydrolytic haloalkane dehalogenase linb from sphingomonas paucimobilis UT26 with 1,3-propanediol, a product of debromidation of dibrompropane, at 2.0A resolution 分子名称: 1,3-PROPANDIOL, BROMIDE ION, HALOALKANE DEHALOGENASE 著者 Marek, J, Vevodova, J, Damborsky, J, Smatanova, I, Svensson, L.A, Newman, J, Nagata, Y, Takagi, M. 登録日 1999-09-09 公開日 2000-09-11 最終更新日 2023-08-09 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Crystal structure of the haloalkane dehalogenase from Sphingomonas paucimobilis UT26. Biochemistry, 39, 2000
1AG3	DUPLEX OLIGODEOXYNUCLEOTIDE CONTAINING PROPANODEOXYGUANOSINE OPPOSITE A TWO-BASE DELETION, NMR, MINIMIZED AVERAGE STRUCTURE 分子名称: DNA (5'-D(*AP*TP*CP*GP*CP*PP*CP*GP*GP*CP*AP*TP*G)-3'), DNA (5'-D(*CP*AP*TP*GP*CP*CP*GP*CP*GP*AP*T)-3') 著者 Weisenseel, J.P, Stone, M.P. 登録日 1997-03-31 公開日 1997-07-07 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Structure of a duplex oligodeoxynucleotide containing propanodeoxyguanosine opposite a two-base deletion in the (CpG)3 frame shift hotspot of Salmonella typhimurium hisD3052 determined by 1H NMR and restrained molecular dynamics. Biochemistry, 34, 1995
1BTS	THE SOLUTION STRUCTURES OF THE FIRST AND SECOND TRANSMEMBRANE-SPANNING SEGMENTS OF BAND 3 分子名称: BAND 3 ANION TRANSPORT PROTEIN 著者 Gargaro, A.R, Bloomberg, G.B, Dempsey, C.E, Murray, M, Tanner, M.J.A. 登録日 1994-08-03 公開日 1994-11-01 最終更新日 2022-02-16 実験手法 SOLUTION NMR 主引用文献 The solution structures of the first and second transmembrane-spanning segments of band 3. Eur.J.Biochem., 221, 1994

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