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1QPY	CRYSTAL STRUCTURE OF BACKBONE MODIFIED PNA HEXAMER 分子名称: PEPTIDE NUCLEIC ACID 5'-(*CP1*GPN*TP1*APN*CP1*GPN*LYS)-3' 著者 Haima, G, Rasmussen, H, Schmidt, G, Jensen, D.K, Kastrup, J.S, Stafshede, P.W, Norden, B, Buchardt, O, Nielsen, P.E. 登録日 1999-05-14 公開日 2001-02-21 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Peptide Nucleic Acids (PNA) derived from N-(N-methylaminoethyl)glycine. Synthesis, hybridization and structural properties New J.Chem., 23, 1999
1OKF	NMR structure of an alpha-L-LNA:RNA hybrid 分子名称: 5'-D(*CP*ATLP*GP*AP*ATLP*AP*ATLP*GP*CP)-3', 5'-R(*GP*CP*AP*UP*AP*UP*CP*AP*GP)-3' 著者 Nielsen, J.T, Stein, P.C, Petersen, M. 登録日 2003-07-23 公開日 2003-10-09 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 NMR Structure of an Alpha-L-Lna:RNA Hybrid: Structural Implications for Rnase H Recognition Nucleic Acids Res., 31, 2003
1OCI	[3.2.0]bcANA:DNA 分子名称: 5'-D(*CP*TP*GP*A TLBP*AP*TP*GP*CP)-3', 5'-D(*GP*CP*AP*TP*AP*TP*CP*AP*GP)-3' 著者 Tommerholt, H.V, Christensen, N.K, Nielsen, P, Wengel, J, Stein, P.C, Jacobsen, J.P, Petersen, M. 登録日 2003-02-07 公開日 2003-07-14 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 NMR Solution Structure of a DsDNA Containing a Bicyclic D-Arabino-Configured Nucleotide Fixed in an O4'-Endo Sugar Conformation Org.Biomol.Chem., 1, 2003
1PWF	One Sugar Pucker Fits All: Pairing Versatility Despite Conformational Uniformity in TNA 分子名称: 5'-D(*GP*CP*GP*TP*AP*(2MU)P*(FA2)P*CP*GP*C)-3', SPERMINE 著者 Pallan, P.S, Wilds, C.J, Wawrzak, Z, Krishnamurthy, R, Eschenmoser, A, Egli, M. 登録日 2003-07-01 公開日 2004-07-13 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (1.16 Å) 主引用文献 Why does TNA cross-pair more strongly with RNA than with DNA? an answer from X-ray analysis. ANGEW.CHEM.INT.ED.ENGL., 42, 2003
1RTD	STRUCTURE OF A CATALYTIC COMPLEX OF HIV-1 REVERSE TRANSCRIPTASE: IMPLICATIONS FOR NUCLEOSIDE ANALOG DRUG RESISTANCE 分子名称: DNA PRIMER FOR REVERSE TRANSCRIPTASE, DNA TEMPLATE FOR REVERSE TRANSCRIPTASE, MAGNESIUM ION, ... 著者 Chopra, R, Huang, H, Verdine, G.L, Harrison, S.C. 登録日 1998-08-26 公開日 1998-12-09 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 Structure of a covalently trapped catalytic complex of HIV-1 reverse transcriptase: implications for drug resistance. Science, 282, 1998
2EKE	Structure of a SUMO-binding-motif mimic bound to Smt3p-Ubc9p: conservation of a noncovalent Ubiquitin-like protein-E2 complex as a platform for selective interactions within a SUMO pathway 分子名称: SUMO-conjugating enzyme UBC9, Ubiquitin-like protein SMT3 著者 Duda, D.M, Schulman, B.A. 登録日 2007-03-23 公開日 2007-05-29 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Structure of a SUMO-binding-motif Mimic Bound to Smt3p-Ubc9p: Conservation of a Non-covalent Ubiquitin-like Protein-E2 Complex as a Platform for Selective Interactions within a SUMO Pathway J.Mol.Biol., 369, 2007
2FDC	Structural Basis of DNA Damage Recognition and Processing by UvrB: crystal structure of a UvrB/DNA complex 分子名称: 5'-D(P*CP*GP*GP*CP*TP*CP*CP*AP*TP*CP*TP*CP*TP*AP*CP*CP*GP*CP*AP*A)-3', N-[6-(ACETYLAMINO)HEXYL]-3',6'-DIHYDROXY-3-OXO-3H-SPIRO[2-BENZOFURAN-1,9'-XANTHENE]-6-CARBOXAMIDE, UvrABC system protein B 著者 Truglio, J.J, Kisker, C. 登録日 2005-12-13 公開日 2006-03-14 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (3.3 Å) 主引用文献 Structural basis for DNA recognition and processing by UvrB. Nat.Struct.Mol.Biol., 13, 2006
2G1Z	X-ray structure of the oligonucleotide sequence d(AAATTT) 分子名称: 5'-D(*AP*AP*AP*TP*TP*T)-3' 著者 Valls, N, Santaolalla, A, Campos, J.L, Subirana, J.A. 登録日 2006-02-15 公開日 2006-03-21 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (3.11 Å) 主引用文献 Packing features of the all-AT oligonucleotide d(AAATTT). J.Biomol.Struct.Dyn., 24, 2007
2H9S	Crystal Structure of Homo-DNA and Nature's Choice of Pentose over Hexose in the Genetic System 分子名称: 5'-D(*(XCT)P*(XGU)P*(XAD)P*(XAD)P*(XTH)P*(XTH)P*(XCT)P*(XGU))-3', MAGNESIUM ION 著者 Egli, M, Pallan, P.S. 登録日 2006-06-11 公開日 2006-12-12 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (1.75 Å) 主引用文献 Crystal structure of homo-DNA and nature's choice of pentose over hexose in the genetic system. J.Am.Chem.Soc., 128, 2006
1QP7	PURINE REPRESSOR MUTANT-HYPOXANTHINE-PALINDROMIC OPERATOR COMPLEX 分子名称: DNA (5'-D(*TP*AP*CP*GP*CP*AP*AP*CP*CP*GP*GP*TP*TP*GP*CP*GP*T)-3'), HYPOXANTHINE, PROTEIN (PURINE NUCLEOTIDE SYNTHESIS REPRESSOR) 著者 Glasfeld, A, Koehler, A.N, Schumacher, M.A, Brennan, R.G. 登録日 1999-06-01 公開日 1999-06-04 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 The role of lysine 55 in determining the specificity of the purine repressor for its operators through minor groove interactions. J.Mol.Biol., 291, 1999
1QPZ	PURINE REPRESSOR-HYPOXANTHINE-PALINDROMIC OPERATOR COMPLEX 分子名称: DNA (5'-D(*TP*AP*CP*GP*CP*AP*AP*AP*CP*GP*TP*TP*TP*GP*CP*GP*T)-3'), HYPOXANTHINE, PROTEIN (PURINE NUCLEOTIDE SYNTHESIS REPRESSOR) 著者 Glasfeld, A, Koehler, A.N, Schumacher, M.A, Brennan, R.G. 登録日 1999-06-01 公開日 1999-06-07 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 The role of lysine 55 in determining the specificity of the purine repressor for its operators through minor groove interactions. J.Mol.Biol., 291, 1999
1QQA	PURINE REPRESSOR MUTANT-HYPOXANTHINE-PALINDROMIC OPERATOR COMPLEX 分子名称: DNA (5'-D(*TP*AP*CP*GP*CP*AP*AP*GP*CP*GP*CP*TP*TP*GP*CP*GP*T)-3'), HYPOXANTHINE, PROTEIN (PURINE NUCLEOTIDE SYNTHESIS REPRESSOR) 著者 Glasfeld, A, Koehler, A.N, Schumacher, M.A, Brennan, R.G. 登録日 1999-06-01 公開日 1999-06-09 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 The role of lysine 55 in determining the specificity of the purine repressor for its operators through minor groove interactions. J.Mol.Biol., 291, 1999
1HX4	MOLECULAR TOPOLOGY OF POLYCYCLIC AROMATIC CARCINOGENS DETERMINES DNA ADDUCT CONFORMATION: A LINK TO TUMORIGENIC ACTIVITY 分子名称: (1R)-1,2,3,4-TETRAHYDRO-BENZO[C]PHENANTHRENE-2,3,4-TRIOL, 5'-D(*CP*CP*AP*TP*CP*GP*CP*TP*AP*CP*C)-3', 5'-D(*GP*GP*TP*AP*GP*CP*GP*AP*TP*GP*G)-3' 著者 Patel, D.J, Lin, C.H, Geacintov, N.E, Broyde, S, Huang, X, Kolbanovskii, A, Hingerty, B.E, Amin, S. 登録日 2001-01-11 公開日 2001-03-21 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Molecular topology of polycyclic aromatic carcinogens determines DNA adduct conformation: a link to tumorigenic activity. J.Mol.Biol., 306, 2001
1QP0	PURINE REPRESSOR-HYPOXANTHINE-PALINDROMIC OPERATOR COMPLEX 分子名称: DNA (5'-D(*TP*AP*CP*GP*CP*AP*AP*CP*CP*GP*GP*TP*TP*GP*CP*GP*T)-3'), HYPOXANTHINE, PROTEIN (PURINE NUCLEOTIDE SYNTHESIS REPRESSOR) 著者 Glasfeld, A, Koehler, A.N, Schumacher, M.A, Brennan, R.G. 登録日 1999-06-01 公開日 1999-06-07 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 The role of lysine 55 in determining the specificity of the purine repressor for its operators through minor groove interactions. J.Mol.Biol., 291, 1999
1QP4	PURINE REPRESSOR-HYPOXANTHINE-PALINDROMIC OPERATOR COMPLEX 分子名称: DNA (5'-D(*TP*AP*CP*GP*CP*AP*AP*TP*CP*GP*AP*TP*TP*GP*CP*GP*T)-3'), HYPOXANTHINE, PROTEIN (PURINE NUCLEOTIDE SYNTHESIS REPRESSOR) 著者 Glasfeld, A, Koehler, A.N, Schumacher, M.A, Brennan, R.G. 登録日 1999-06-01 公開日 1999-06-07 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 The role of lysine 55 in determining the specificity of the purine repressor for its operators through minor groove interactions. J.Mol.Biol., 291, 1999
1QQB	PURINE REPRESSOR MUTANT-HYPOXANTHINE-PALINDROMIC OPERATOR COMPLEX 分子名称: 5'-D(*TP*AP*CP*GP*CP*AP*AP*TP*CP*GP*AP*TP*TP*GP*CP*GP*T)-3', HYPOXANTHINE, PURINE NUCLEOTIDE SYNTHESIS REPRESSOR 著者 Glasfeld, A, Koehler, A.N, Schumacher, M.A, Brennan, R.G. 登録日 1999-06-01 公開日 1999-06-09 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 The role of lysine 55 in determining the specificity of the purine repressor for its operators through minor groove interactions. J.Mol.Biol., 291, 1999
1GV6	Solution structure of alfa-L-LNA:DNA duplex 分子名称: 5- D(*CP*(ATL)P*GP*CP*(ATL)P*(ATL)P*CP*(ATL)P* GP*C) -3, 5- D(*GP*CP*AP*GP*AP*AP*GP*CP*AP*G) -3 著者 Nielsen, K.M.E, Petersen, M, Haakansson, A.E, Wengel, J, Jacobsen, J.P. 登録日 2002-02-06 公開日 2002-07-05 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Alfa-L-Lna (Alfa-L-Ribo Configured Locked Nucleic Acid) Recognition of DNA: An NMR Spectroscopic Study Chemistry, 8, 2002
6U89	RNA duplex, bound with TNA monomer 分子名称: 2-azanyl-9-[(2~{R},3~{R},4~{S})-3-oxidanyl-4-[oxidanyl-bis(oxidanylidene)-$l^{6}-phosphanyl]oxy-oxolan-2-yl]-1~{H}-purin-6-one, RNA (5'-R(*(LCC)P*(TLN)P*(LCG)P*UP*AP*CP*A)-3') 著者 Szostak, J.W, Zhang, W. 登録日 2019-09-04 公開日 2020-12-09 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2.36 Å) 主引用文献 Structural interpretation of the effects of threo-nucleotides on nonenzymatic template-directed polymerization. Nucleic Acids Res., 49, 2021
5HBW	RNA primer-template complex with 2-methylimidazole-activated monomer analogue 分子名称: RNA (5'-R(*(LCC)P*(TLN)P*(LCG)P*UP*AP*CP*A)-3'), [(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-(3-methyl-1~{H}-pyrazol-4-yl)phosphinic acid 著者 Zhang, W, Tam, C.P, Szostak, J.W. 登録日 2016-01-03 公開日 2016-12-07 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Unusual Base-Pairing Interactions in Monomer-Template Complexes. ACS Cent Sci, 2, 2016
8SX6	RNA duplex bound with GMP and AMP monomers 分子名称: ADENOSINE MONOPHOSPHATE, GUANOSINE-5'-MONOPHOSPHATE, MAGNESIUM ION, ... 著者 Zhang, W, Dantsu, Y. 登録日 2023-05-19 公開日 2023-05-31 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (1.45 Å) 主引用文献 Insight into the structures of unusual base pairs in RNA complexes containing a primer/template/adenosine ligand. Rsc Chem Biol, 4, 2023
8SX5	GpppA dinucleotide binding to RNA CU template 分子名称: GUANOSINE-P3-ADENOSINE-5',5'-TRIPHOSPHATE, RNA (5'-R(*(TLN)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*G*(GA3))-3') 著者 Zhang, W, Dantsu, Y. 登録日 2023-05-19 公開日 2023-05-31 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Insight into the structures of unusual base pairs in RNA complexes containing a primer/template/adenosine ligand. Rsc Chem Biol, 4, 2023
8SXL	RNA UU template binding to AMP monomer 分子名称: ADENOSINE MONOPHOSPHATE, RNA (5'-R(*(TLN)P*(TLN)P*(LCA)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*U)-3') 著者 Zhang, W, Dantsu, Y. 登録日 2023-05-22 公開日 2023-05-31 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Insight into the structures of unusual base pairs in RNA complexes containing a primer/template/adenosine ligand. Rsc Chem Biol, 4, 2023
8SWO	GpppA dinucleotide ligand binding to RNA UC template 分子名称: GUANOSINE-P3-ADENOSINE-5',5'-TRIPHOSPHATE, MAGNESIUM ION, RNA (5'-R(*(TLN)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*G*(GA3))-3') 著者 Zhang, W, Dantsu, Y. 登録日 2023-05-19 公開日 2023-05-31 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (1.64 Å) 主引用文献 Insight into the structures of unusual base pairs in RNA complexes containing a primer/template/adenosine ligand. Rsc Chem Biol, 4, 2023
8SY1	RNA duplex bound with imidazolium bridged GA dinucleotide 分子名称: RNA (5'-R(*(TLN)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*G*(GMA))-3'), [(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-[2-azanyl-3-[[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]imidazol-1-yl]phosphinic acid 著者 Zhang, W, Dantsu, Y. 登録日 2023-05-24 公開日 2023-05-31 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (1.76 Å) 主引用文献 Insight into the structures of unusual base pairs in RNA complexes containing a primer/template/adenosine ligand. Rsc Chem Biol, 4, 2023
2X2Q	Crystal structure of an 'all locked' LNA duplex at 1.9 angstrom resolution 分子名称: CACODYLATE ION, COBALT HEXAMMINE(III), LOCKED NUCLEIC ACID DERIVED FROM TRNA SER ACCEPTOR STEM MICROHELIX, ... 著者 Eichert, A, Behling, K, Fuerste, J.P, Betzel, C, Erdmann, V.A, Foerster, C. 登録日 2010-01-15 公開日 2011-02-16 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 The Crystal Structure of an 'All Locked' Nucleic Acid Duplex. Nucleic Acids Res., 38, 2010

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