PDB: 45817 件ウェブページステータス検索Chemie searchBIRD

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7SGC	Replication Initiator Protein REPE54 and cognate DNA sequence with terminal five prime phosphates. 分子名称: DNA (5'-D(P*CP*CP*TP*GP*TP*GP*AP*CP*AP*AP*AP*TP*TP*GP*CP*CP*CP*TP*CP*AP*G)-3'), DNA (5'-D(P*CP*TP*GP*AP*GP*GP*GP*CP*AP*AP*TP*TP*TP*GP*TP*CP*AP*CP*AP*GP*G)-3'), MAGNESIUM ION, ... 著者 Ward, A.R, Snow, C.D. 登録日 2021-10-05 公開日 2021-10-13 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Stabilizing DNA-Protein Co-Crystals via Intra-Crystal Chemical Ligation of the DNA Crystals, 12, 2022
1KVH	NCSi-gb-bulge-DNA complex induced formation of a DNA bulge structure by a molecular wedge ligand-post-activated neocarzinostatin chromophore 分子名称: 5'-D(*CP*CP*CP*GP*AP*TP*GP*C)-3', 5'-D(*GP*CP*AP*AP*TP*TP*CP*GP*GP*G)-3', SPIRO[[7-METHOXY-5-METHYL-1,2-DIHYDRO-NAPHTHALENE]-3,1'-[5-HYDROXY-9-[2-METHYLAMINO-2,6-DIDEOXYGALACTOPYRANOSYL-OXY]-5-(2-OXO-[1,3]DIOXOLAN-4-YL)-3A,5,9,9A-TETRAHYDRO-3H-1-OXA-CYCLOPENTA[A]-S-INDACEN-2-ONE]] 著者 Gao, X, Stassinopoulos, A, Ji, J, Kwon, Y, Bare, S, Goldberg, I.H. 登録日 2002-01-26 公開日 2002-06-19 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Induced formation of a DNA bulge structure by a molecular wedge ligand-postactivated neocarzinostatin chromophore. Biochemistry, 41, 2002
5X9Y	Crystal structure of the ATPase domain from bacterial mismatch repair endonuclease Aquifex aeolicus MutL. 分子名称: DI(HYDROXYETHYL)ETHER, DNA mismatch repair protein MutL 著者 Fukui, K, Yano, T. 登録日 2017-03-10 公開日 2017-08-30 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (3.443 Å) 主引用文献 Crystal structure and DNA-binding property of the ATPase domain of bacterial mismatch repair endonuclease MutL from Aquifex aeolicus Biochim. Biophys. Acta, 1865, 2017
2P0J	Structure of restriction endonuclease BstYI bound to non-cognate DNA 分子名称: 5'-D(*AP*TP*GP*AP*AP*TP*CP*CP*AP*TP*A)-3', 5'-D(*TP*AP*TP*GP*GP*AP*TP*TP*CP*AP*T)-3', BstYI 著者 Townson, S.A, Samuelson, J.C, Bao, Y, Xu, S.Y, Aggarwal, A.K. 登録日 2007-02-28 公開日 2007-05-01 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 BstYI Bound to Noncognate DNA Reveals a "Hemispecific" Complex: Implications for DNA Scanning. Structure, 15, 2007
7RZM	Crystal Structure of dnaN DNA polymerase III beta subunit from Stenotrophomonas maltophilia K279a 分子名称: DNA polymerase III subunit beta 著者 Seattle Structural Genomics Center for Infectious Disease (SSGCID) 登録日 2021-08-27 公開日 2021-10-20 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 Crystal Structure of dnaN DNA polymerase III beta subunit from Stenotrophomonas maltophilia K279a To Be Published
1U47	cytosine-8-Oxoguanine base pair at the polymerase active site 分子名称: DNA polymerase I, DNA primer strand, DNA template strand with 8-oxoguanine, ... 著者 Hsu, G.W, Ober, M, Carell, T, Beese, L.S. 登録日 2004-07-23 公開日 2004-09-14 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Error-prone replication of oxidatively damaged DNA by a high-fidelity DNA polymerase. Nature, 431, 2004
6OOV	Crystal structure of HMCES SRAP domain in complex with palindromic 3' overhang DNA 分子名称: DNA (5'-D(*CP*AP*AP*CP*GP*TP*TP*GP*TP*TP*TP*TP*T)-3'), Embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein, UNKNOWN ATOM OR ION 著者 Halabelian, L, Zeng, H, Li, Y, Bountra, C, Edwards, A.M, Arrowsmith, C.H, Structural Genomics Consortium (SGC) 登録日 2019-04-23 公開日 2019-05-15 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Crystal structure of HMCES SRAP domain in complex with palindromic 3' overhang DNA To Be Published
7SCY	Nuc147 bound to single BRCT 分子名称: DNA (147-MER), Histone H2A, Histone H2B type 1-J, ... 著者 Muthurajan, U.M, Rudolph, J.R. 登録日 2021-09-29 公開日 2022-01-12 最終更新日 2024-06-05 実験手法 ELECTRON MICROSCOPY (4.1 Å) 主引用文献 The BRCT domain of PARP1 binds intact DNA and mediates intrastrand transfer. Mol.Cell, 81, 2021
7SCZ	Nuc147 bound to multiple BRCTs 分子名称: DNA (147-MER), Histone H2A, Histone H2B type 1-J, ... 著者 Muthurajan, U.M, Rudolph, J. 登録日 2021-09-29 公開日 2022-01-19 最終更新日 2024-06-05 実験手法 ELECTRON MICROSCOPY (3.5 Å) 主引用文献 The BRCT domain of PARP1 binds intact DNA and mediates intrastrand transfer. Mol.Cell, 81, 2021
5X3G	The WT UNG crystal structure from Nitratifractor salsuginis 分子名称: Uracil-DNA glycosylase 著者 Xie, W, Cao, W, Chen, R, Zhang, Z. 登録日 2017-02-06 公開日 2017-10-18 最終更新日 2017-12-13 実験手法 X-RAY DIFFRACTION (2.021 Å) 主引用文献 An unconventional family 1 uracil DNA glycosylase in Nitratifractor salsuginis. FEBS J., 284, 2017
5X3H	The Y81G mutant of the UNG crystal structure from Nitratifractor salsuginis 分子名称: Uracil-DNA glycosylase 著者 Xie, W, Chen, R, Cao, W, Zhang, Z. 登録日 2017-02-06 公開日 2017-10-18 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 An unconventional family 1 uracil DNA glycosylase in Nitratifractor salsuginis. FEBS J., 284, 2017
1KSB	Relationship of Solution and Protein-Bound Structures of DNA Duplexes with the Major Intrastrand Cross-Link Lesions Formed on Cisplatin Binding to DNA 分子名称: 5'-D(*AP*GP*GP*CP*CP*GP*GP*AP*G)-3', 5'-D(*CP*TP*CP*CP*GP*GP*CP*CP*T)-3', Cisplatin 著者 Marzilli, L.G, Saad, J.S, Kuklenyik, Z, Keating, K.A, Xu, Y. 登録日 2002-01-11 公開日 2002-01-17 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Relationship of solution and protein-bound structures of DNA duplexes with the major intrastrand cross-link lesions formed on cisplatin binding to DNA. J.Am.Chem.Soc., 123, 2001
8PKI	Cryo-EM structure of NR5A2-nucleosome complex SHL+5.5 分子名称: DNA, Histone H2A, Histone H2B type 1-C/E/G, ... 著者 Kobayashi, W, Sappler, A, Bollschweiler, D, Kummecke, M, Basquin, J, Arslantas, E, Ruangroengkulrith, S, Hornberger, R, Duderstadt, K, Tachibana, K. 登録日 2023-06-26 公開日 2024-02-28 最終更新日 2024-05-29 実験手法 ELECTRON MICROSCOPY (2.58 Å) 主引用文献 Nucleosome-bound NR5A2 structure reveals pioneer factor mechanism by DNA minor groove anchor competition. Nat.Struct.Mol.Biol., 31, 2024
8PW0	Manganese-dependent transcriptional repressor DR2539 complexed with manganese and bound to dr1709 promotor 分子名称: DNA (5'-D(*TP*AP*TP*TP*TP*TP*AP*GP*GP*CP*GP*CP*GP*AP*CP*TP*AP*AP*AP*AP*T)-3'), GLYCEROL, Iron dependent repressor, ... 著者 Mota, C, De Sanctis, D. 登録日 2023-07-18 公開日 2024-05-08 最終更新日 2024-08-14 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Metal ion activation and DNA recognition by the Deinococcus radiodurans manganese sensor DR2539. Febs J., 291, 2024
9BHA	Human DNA polymerase theta helicase domain dimer bound to DNA in the microhomology annealed conformation 分子名称: DNA polymerase theta, Stem-loop DNA with microhomology in the 3' overhang 著者 Zerio, C.J, Lander, G.C. 登録日 2024-04-19 公開日 2024-05-01 実験手法 ELECTRON MICROSCOPY (3.5 Å) 主引用文献 Human polymerase theta helicase positions DNA microhomologies for double-strand break repair To Be Published
9BH9	Human DNA polymerase theta helicase domain dimer bound to DNA in the microhomology aligning conformation 分子名称: DNA polymerase theta, Stem-loop DNA with microhomology in the 3' overhang 著者 Zerio, C.J, Lander, G.C. 登録日 2024-04-19 公開日 2024-05-01 実験手法 ELECTRON MICROSCOPY (3.5 Å) 主引用文献 Human polymerase theta helicase positions DNA microhomologies for double-strand break repair To Be Published
9GBV	E.coli gyrase holocomplex with chirally wrapped 217 bp DNA fragment 分子名称: DNA gyrase subunit A, DNA gyrase subunit B, MAGNESIUM ION, ... 著者 Michalczyk, E, Ghilarov, D. 登録日 2024-07-31 公開日 2024-08-21 実験手法 ELECTRON MICROSCOPY (2.32 Å) 主引用文献 Structure of Escherichia coli DNA gyrase with chirally wrapped DNA supports ratchet-and-pawl mechanism for an ATP-powered supercoiling motor Proceedings of the National Academy of Sciences USA, 2024
6LYJ	The crystal structure of SAUGI/EBVUDG complex 分子名称: SAUGI, Uracil-DNA glycosylase 著者 Liao, Y.T, Ko, T.P, Wang, H.C. 登録日 2020-02-14 公開日 2020-06-24 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Structural insight into the differential interactions between the DNA mimic protein SAUGI and two gamma herpesvirus uracil-DNA glycosylases. Int.J.Biol.Macromol., 160, 2020
7YZA	Crystal structure of the zebrafish FoxH1 bound to the TGTGTATT site 分子名称: DNA (5'-D(*AP*GP*AP*TP*TP*GP*TP*GP*TP*AP*TP*TP*GP*AP*GP*A)-3'), DNA (5'-D(*TP*CP*TP*CP*AP*AP*TP*AP*CP*AP*CP*AP*AP*TP*CP*T)-3'), Forkhead box protein H1, ... 著者 Pluta, R, Macias, M.J. 登録日 2022-02-19 公開日 2022-11-16 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.18 Å) 主引用文献 Molecular basis for DNA recognition by the maternal pioneer transcription factor FoxH1. Nat Commun, 13, 2022
7YZ7	Crystal structure of the zebrafish FoxH1 bound to the TGTGGATT site 分子名称: DNA (5'-D(*AP*GP*AP*TP*TP*GP*TP*GP*GP*AP*TP*TP*GP*AP*GP*A)-3'), DNA (5'-D(*TP*CP*TP*CP*AP*AP*TP*CP*CP*AP*CP*AP*AP*TP*CP*T)-3'), Forkhead box protein H1, ... 著者 Pluta, R, Macias, M.J. 登録日 2022-02-18 公開日 2022-11-16 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (0.98 Å) 主引用文献 Molecular basis for DNA recognition by the maternal pioneer transcription factor FoxH1. Nat Commun, 13, 2022
7YZB	Crystal structure of the human FoxH1 bound to the TGTGGATT site 分子名称: DNA (5'-D(*AP*GP*AP*TP*TP*GP*TP*GP*GP*AP*TP*TP*GP*CP*GP*A)-3'), DNA (5'-D(*TP*CP*GP*CP*AP*AP*TP*CP*CP*AP*CP*AP*AP*TP*CP*T)-3'), Forkhead box protein H1, ... 著者 Pluta, R, Macias, M.J. 登録日 2022-02-19 公開日 2022-11-16 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.47 Å) 主引用文献 Molecular basis for DNA recognition by the maternal pioneer transcription factor FoxH1. Nat Commun, 13, 2022
7YZG	Crystal structure of the Xenopus FoxH1 bound to the TGTGGATT site 分子名称: DNA (5'-D(*CP*AP*GP*AP*TP*TP*GP*TP*GP*GP*AP*TP*TP*GP*AP*G)-3'), DNA (5'-D(*CP*TP*CP*AP*AP*TP*CP*CP*AP*CP*AP*AP*TP*CP*TP*G)-3'), Forkhead box protein H1 著者 Pluta, R, Macias, M.J. 登録日 2022-02-19 公開日 2022-11-16 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2.82 Å) 主引用文献 Molecular basis for DNA recognition by the maternal pioneer transcription factor FoxH1. Nat Commun, 13, 2022
7YZE	Crystal structure of the human FoxA2 bound to the TGTTTACT site (forkhead motif GTAAACA) 分子名称: DNA (5'-D(*AP*GP*AP*TP*TP*GP*TP*TP*TP*AP*CP*TP*GP*AP*GP*A)-3'), DNA (5'-D(*TP*CP*TP*CP*AP*GP*TP*AP*AP*AP*CP*AP*AP*TP*CP*T)-3'), Hepatocyte nuclear factor 3-beta, ... 著者 Pluta, R, Macias, M.J. 登録日 2022-02-19 公開日 2022-11-16 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.99 Å) 主引用文献 Molecular basis for DNA recognition by the maternal pioneer transcription factor FoxH1. Nat Commun, 13, 2022
7YZF	Crystal structure of the human FoxA2 bound to the TGTTTATT site (forkhead motif ATAAACA) 分子名称: DNA (5'-D(P*AP*GP*AP*TP*TP*GP*TP*TP*TP*AP*TP*TP*GP*AP*GP*A)-3'), DNA (5'-D(P*TP*CP*TP*CP*AP*AP*TP*AP*AP*AP*CP*AP*AP*TP*CP*T)-3'), Hepatocyte nuclear factor 3-beta, ... 著者 Pluta, R, Macias, M.J. 登録日 2022-02-19 公開日 2022-11-16 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2.18 Å) 主引用文献 Molecular basis for DNA recognition by the maternal pioneer transcription factor FoxH1. Nat Commun, 13, 2022
9BAQ	CryoEM structure of DIM2-HP1-H3K9me3-DNA complex 分子名称: DNA (5'-D(*AP*CP*TP*AP*CP*T)-R(P*(PYO))-D(P*CP*TP*CP*CP*TP*CP*CP*TP*AP*CP*T)-3'), DNA (5'-D(*AP*GP*TP*AP*GP*GP*AP*GP*GP*AP*GP*GP*AP*GP*TP*AP*GP*T)-3'), DNA (cytosine-5-)-methyltransferase, ... 著者 Song, J, Shao, Z. 登録日 2024-04-04 公開日 2024-07-24 実験手法 ELECTRON MICROSCOPY (2.79 Å) 主引用文献 CryoEM structure of DIM2-HP1-H3K9me3-DNA complex To Be Published

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