PDB: 45817 件ウェブページステータス検索Chemie searchBIRD

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1CR3	SOLUTION CONFORMATION OF THE (+)TRANS-ANTI-BENZO[G]CHRYSENE-DA ADDUCT OPPOSITE DT IN A DNA DUPLEX 分子名称: BENZO[G]CHRYSENE, DNA (5'-D(*CP*TP*CP*TP*CP*AP*CP*TP*TP*CP*C)-3'), DNA (5'-D(*GP*GP*AP*AP*GP*TP*GP*AP*GP*AP*G)-3') 著者 Suri, A.K, Mao, B, Amin, S, Geacintov, N.E, Patel, D.J. 登録日 1999-08-12 公開日 2000-02-18 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Solution conformation of the (+)-trans-anti-benzo[g]chrysene-dA adduct opposite dT in a DNA duplex. J.Mol.Biol., 292, 1999
5WSQ	Crystal structure of C-Hg-T pair containing DNA duplex 分子名称: 1,3-PROPANDIOL, DNA (5'-D(*GP*CP*CP*CP*GP*TP*GP*C)-3'), MERCURY (II) ION 著者 Gan, J.H, Liu, H.H. 登録日 2016-12-08 公開日 2017-02-08 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (1.05 Å) 主引用文献 Flexibility and stabilization of HgII-mediated C:T and T:T base pairs in DNA duplex Nucleic Acids Res., 45, 2017
5WSS	Crystal structure of T-Hg-T pair containing DNA duplex in the presence Ba2+ 分子名称: BARIUM ION, DNA (5'-D(*GP*GP*TP*CP*GP*TP*CP*C)-3'), MERCURY (II) ION 著者 Gan, J.H, Liu, H.H. 登録日 2016-12-08 公開日 2017-02-08 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (1.45 Å) 主引用文献 Flexibility and stabilization of HgII-mediated C:T and T:T base pairs in DNA duplex Nucleic Acids Res., 45, 2017
1AXV	SOLUTION NMR STRUCTURE OF THE [BP]DA ADDUCT OPPOSITE DT IN A DNA DUPLEX, 6 STRUCTURES 分子名称: 1,2,3-TRIHYDROXY-1,2,3,4-TETRAHYDROBENZO[A]PYRENE, DNA DUPLEX D(CTCTC-[BP]A-CTTCC)D(GGAAGTGAGAG) 著者 Mao, B, Gu, Z, Gorin, A.A, Chen, J, Hingerty, B.E, Amid, S, Broyde, S, Geacintov, N.E, Patel, D.J. 登録日 1997-10-21 公開日 1998-07-01 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Solution structure of the (+)-cis-anti-benzo[a]pyrene-dA ([BP]dA) adduct opposite dT in a DNA duplex. Biochemistry, 38, 1999
4A15	Crystal structure of an XPD DNA complex 分子名称: 5'-D(*DTP*AP*CP*GP)-3', ATP-DEPENDENT DNA HELICASE TA0057, CALCIUM ION, ... 著者 Kuper, J, Wolski, S.C, Michels, G, Kisker, C. 登録日 2011-09-14 公開日 2012-02-01 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Functional and Structural Studies of the Nucleotide Excision Repair Helicase Xpd Suggest a Polarity for DNA Translocation. Embo J., 31, 2011
1DA5	Solution structure of a DNA Duplex containing the CIS-PT(NH3)2[D(-GTG-)-N7-(G)-N7(G)N7(G)]Adduct as determined with high field NMR And molecular mechanics/dynamics 分子名称: Cisplatin, DNA (5'-D(P*CP*TP*CP*TP*AP*GP*TP*GP*CP*TP*CP*AP*C)-3'), DNA (5'-D(P*GP*TP*GP*AP*GP*CP*AP*CP*TP*AP*GP*AP*G)-3') 著者 Van Garderen, C.J, Van Houte, L.P.A. 登録日 1993-01-13 公開日 1994-01-31 最終更新日 2024-04-10 実験手法 SOLUTION NMR 主引用文献 The solution structure of a DNA duplex containing the cis-Pt(NH3)2[d(-GTG-)-N7(G),N7(G)] adduct, as determined with high-field NMR and molecular mechanics/dynamics. Eur.J.Biochem., 225, 1994
1DA4	Solution structure of a DNA duplex containing the CIS-PT(NH3)2[D(-GTG-)-N7-(G)-N7(G)N7(G)]Adduct as determined with high field NMR and molecular mechanics/dynamics 分子名称: Cisplatin, DNA (5'-D(P*CP*TP*CP*TP*AP*GP*TP*GP*CP*TP*CP*AP*C)-3'), DNA (5'-D(P*GP*TP*GP*AP*GP*CP*AP*CP*TP*AP*GP*AP*G)-3') 著者 Van Garderen, C.J, Van Houte, L.P.A. 登録日 1993-01-13 公開日 1994-01-31 最終更新日 2024-04-10 実験手法 SOLUTION NMR 主引用文献 The solution structure of a DNA duplex containing the cis-Pt(NH3)2[d(-GTG-)-N7(G),N7(G)] adduct, as determined with high-field NMR and molecular mechanics/dynamics. Eur.J.Biochem., 225, 1994
1DSA	(+)-DUOCARMYCIN SA COVALENTLY LINKED TO DUPLEX DNA, NMR, 20 STRUCTURES 分子名称: 4-HYDROXY-8-METHYL-6-(4,5,6-TRIMETHOXY-1H-INDOLE-2-CARBONYL)-3,6,7,8-TETRAHYDRO-3,6-DIAZA-AS-INDACENE-2-CARBOXYLIC ACID METHYL ESTER, DNA (5'-D(*GP*AP*CP*TP*AP*AP*TP*TP*GP*AP*C)-3', 5'-D(*GP*TP*CP*AP*AP*TP*TP*AP*GP*TP*C)-3') 著者 Eis, P.S, Smith, J.A, Case, D.A, Chazin, W.J. 登録日 1997-05-08 公開日 1997-08-20 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 High resolution solution structure of a DNA duplex alkylated by the antitumor agent duocarmycin SA. J.Mol.Biol., 272, 1997
4DUH	Crystal structure of 24 kDa domain of E. coli DNA gyrase B in complex with small molecule inhibitor 分子名称: 4-{[4'-methyl-2'-(propanoylamino)-4,5'-bi-1,3-thiazol-2-yl]amino}benzoic acid, DNA gyrase subunit B 著者 Brvar, M, Renko, M, Perdih, A, Solmajer, T, Turk, D. 登録日 2012-02-22 公開日 2012-08-01 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Structure-based discovery of substituted 4,5'-bithiazoles as novel DNA gyrase inhibitors. J.Med.Chem., 55, 2012
2OJZ	Anti-DNA antibody ED10 分子名称: Fab ED10 heavy chain, Fab ED10 light chain 著者 Stanfield, R.L, Sanguineti, S, Wilson, I.A, de Prat-Gay, G. 登録日 2007-01-15 公開日 2007-06-12 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.73 Å) 主引用文献 Specific recognition of a DNA immunogen by its elicited antibody J.Mol.Biol., 370, 2007
7ZVN	Crystal structure of human Annexin A2 in complex with full phosphorothioate 5-10 2'-methoxyethyl DNA gapmer antisense oligonucleotide solved at 1.87 A resolution 分子名称: 2'-methoxyethyl DNA gapmer antisense oligonucleotide, Annexin A2, CALCIUM ION, ... 著者 Hyjek-Skladanowska, M, Anderson, B, Mykhaylyk, V, Orr, C, Wagner, A, Skowronek, K, Seth, P, Nowotny, M. 登録日 2022-05-16 公開日 2022-09-14 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.87 Å) 主引用文献 Structures of annexin A2-PS DNA complexes show dominance of hydrophobic interactions in phosphorothioate binding. Nucleic Acids Res., 51, 2023
7ZVX	Crystal structure of human Annexin A2 in complex with full phosphorothioate 5-10 2'-methoxyethyl DNA gapmer antisense oligonucleotide solved at 2.4 A resolution 分子名称: 1,2-ETHANEDIOL, 2'-methoxyethyl DNA gapmer antisense oligonucleotide, Annexin A2, ... 著者 Hyjek-Skladanowska, M, Anderson, B, Mykhaylyk, V, Orr, C, Wagner, A, Skowronek, K, Seth, P, Nowotny, M. 登録日 2022-05-17 公開日 2022-09-14 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Structures of annexin A2-PS DNA complexes show dominance of hydrophobic interactions in phosphorothioate binding. Nucleic Acids Res., 51, 2023
2A1K	RB69 single-stranded DNA binding protein core domain 分子名称: ZINC ION, gp32 single stranded DNA binding protein 著者 Sun, S, Geng, L, Shamoo, Y. 登録日 2005-06-20 公開日 2006-05-09 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structure and enzymatic properties of a chimeric bacteriophage RB69 DNA polymerase and single-stranded DNA binding protein with increased processivity. Proteins, 65, 2006
1ZDE	1.95 Angstrom Crystal Structure of a dnaE Intein Precursor from Synechocystis Sp. Pcc 6803 分子名称: CALCIUM ION, DNA polymerase III alpha subunit, ZINC ION 著者 Sun, P, Ye, S, Ferrandon, S, Evans, T.C, Xu, M.Q, Rao, Z. 登録日 2005-04-14 公開日 2006-01-24 最終更新日 2024-05-29 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Crystal structures of an intein from the split dnaE gene of Synechocystis sp. PCC6803 reveal the catalytic model without the penultimate histidine and the mechanism of zinc ion inhibition of protein splicing J.Mol.Biol., 353, 2005
6KSD	Structural basis for domain rotation during adenylation of active site K123 and fragment library screening against NAD+ -dependent DNA ligase from Mycobacterium tuberculosis 分子名称: BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE, DNA ligase A, SULFATE ION 著者 Ramachandran, R, Shukla, A, Afsar, M. 登録日 2019-08-23 公開日 2020-08-26 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Salt bridges at the subdomain interfaces of the adenylation domain and active-site residues of Mycobacterium tuberculosis NAD + -dependent DNA ligase A (MtbLigA) are important for the initial steps of nick-sealing activity. Acta Crystallogr D Struct Biol, 77, 2021
6KSC	Structural basis for domain rotation during adenylation of active site K123 and fragment library screening against NAD+ -dependent DNA ligase from Mycobacterium tuberculosis 分子名称: ADENOSINE MONOPHOSPHATE, DNA ligase A, SULFATE ION 著者 Ramachandran, R, Shukla, A, Afsar, M. 登録日 2019-08-23 公開日 2020-08-26 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Salt bridges at the subdomain interfaces of the adenylation domain and active-site residues of Mycobacterium tuberculosis NAD + -dependent DNA ligase A (MtbLigA) are important for the initial steps of nick-sealing activity. Acta Crystallogr D Struct Biol, 77, 2021
1A6H	DNA QUADRUPLEX CONTAINING GCGC TETRAD, NMR, 4 STRUCTURES 分子名称: DNA (5'-D(GP*CP*GP*GP*TP*TP*TP*GP*CP*GP*G)-3') 著者 Kettani, A, Kumar, R.A, Patel, D.J. 登録日 1998-02-25 公開日 1998-06-17 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Solution structure of a DNA quadruplex containing the fragile X syndrome triplet repeat. J.Mol.Biol., 254, 1995
3OT0	Crystal structure of a DNA containing the rigid nitroxide spin-labeled nucleotide C-spin 分子名称: Spin-labeled DNA 著者 Edwards, T.E. 登録日 2010-09-10 公開日 2011-01-19 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (1.7004 Å) 主引用文献 Crystal structure of a DNA containing the planar, phenoxazine-derived bi-functional spectroscopic probe C. Nucleic Acids Res., 10, 2011
1C9F	NMR STRUCTURE OF THE CAD DOMAIN OF CASPASE-ACTIVATED DNASE 分子名称: CASPASE-ACTIVATED DNASE 著者 Yamazaki, T, Uegaki, K. 登録日 1999-08-02 公開日 2000-02-16 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Structure of the CAD domain of caspase-activated DNase and interaction with the CAD domain of its inhibitor. J.Mol.Biol., 297, 2000
1RDE	NMR structure of the thrombin-binding DNA aptamer stabilized by Sr2+ 分子名称: Thrombin-binding DNA aptamer 著者 Mao, X, Marky, L.A, Gmeiner, W.H. 登録日 2003-11-05 公開日 2003-11-11 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 NMR structure of the thrombin-binding DNA aptamer stabilized by Sr2+. J.Biomol.Struct.Dyn., 22, 2004
1ZXN	Human DNA topoisomerase IIa ATPase/ADP 分子名称: ADENOSINE-5'-DIPHOSPHATE, DNA topoisomerase II, alpha isozyme, ... 著者 Wei, H, Ruthenburg, A.J, Bechis, S.K, Verdine, G.L. 登録日 2005-06-08 公開日 2005-08-23 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.51 Å) 主引用文献 Nucleotide-dependent Domain Movement in the ATPase Domain of a Human Type IIA DNA Topoisomerase. J.Biol.Chem., 280, 2005
1U6C	The NMR-derived solution structure of the (2S,3S)-N6-(2,3,4-trihydroxybutyl)-2'-deoxyadenosyl DNA adduct of butadiene diol epoxide 分子名称: (2S,3S)-N6-(2,3,4-trihydroxybutyl)-2'-deoxyadenosyl DNA adduct of butadiene diol epoxide 著者 Scholdberg, T.A, Nechev, L.N, Merritt, W.K, Harris, T.M, Harris, C.M, Lloyd, R.S, Stone, M.P. 登録日 2004-07-29 公開日 2004-08-17 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Structure of a site specific major groove (2S,3S)-N6-(2,3,4-trihydroxybutyl)-2'-deoxyadenosyl DNA adduct of butadiene diol epoxide. Chem.Res.Toxicol., 17, 2004
3P4H	Structures of archaeal members of the LigD 3'-phosphoesterase DNA repair enzyme superfamily 分子名称: ATP-dependent DNA ligase, N-terminal domain protein, DI(HYDROXYETHYL)ETHER, ... 著者 Smith, P, Nair, P.A, Das, U, Zhu, H, Shuman, S. 登録日 2010-10-06 公開日 2011-01-19 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (1.1 Å) 主引用文献 Structures and activities of archaeal members of the LigD 3'-phosphoesterase DNA repair enzyme superfamily. Nucleic Acids Res., 39, 2011
3OIQ	Crystal structure of yeast telomere protein Cdc13 OB1 and the catalytic subunit of DNA polymerase alpha Pol1 分子名称: Cell division control protein 13, DNA polymerase alpha catalytic subunit A 著者 Sun, J, Yang, Y, Wan, K, Mao, N, Yu, T.Y, Lin, Y.C, DeZwaan, D.C, Freeman, B.C, Lin, J.J, Lue, N.F, Lei, M. 登録日 2010-08-19 公開日 2010-11-03 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Structural bases of dimerization of yeast telomere protein Cdc13 and its interaction with the catalytic subunit of DNA polymerase alpha. Cell Res., 21, 2011
5U5P	Crystal Structure and X-ray Diffraction Data Collection of Importin-alpha from Mus Musculus Complexed with a MLH1 NLS Peptide 分子名称: 2,3-DIHYDROXY-1,4-DITHIOBUTANE, DNA mismatch repair protein Mlh1, Importin subunit alpha-1 著者 Barros, A.C, Takeda, A.A, Dreyer, T.R, Velazquez-Campoy, A, Kobe, B, Fontes, M.R. 登録日 2016-12-07 公開日 2018-03-14 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2.171 Å) 主引用文献 DNA mismatch repair proteins MLH1 and PMS2 can be imported to the nucleus by a classical nuclear import pathway. Biochimie, 146, 2018

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