PDB: 85 件ウェブページステータス検索Chemie searchBIRD

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1TDZ	Crystal Structure Complex Between the Lactococcus Lactis FPG (Mutm) and a FAPY-dG Containing DNA 分子名称: 5'-D(*CP*TP*CP*TP*TP*TP*(FOX)P*TP*TP*TP*CP*TP*CP*G)-3', 5'-D(*GP*CP*GP*AP*GP*AP*AP*AP*CP*AP*AP*AP*GP*A)-3', GLYCEROL, ... 著者 Coste, F, Ober, M, Carell, T, Boiteux, S, Zelwer, C, Castaing, B. 登録日 2004-05-24 公開日 2004-09-07 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Structural basis for the recognition of the FapydG lesion (2,6-diamino-4-hydroxy-5-formamidopyrimidine) by formamidopyrimidine-DNA glycosylase J.Biol.Chem., 279, 2004
4CIS	Structure of MutM in complex with carbocyclic 8-oxo-G containing DNA 分子名称: (R,R)-2,3-BUTANEDIOL, DNA, FORMAMIDOPYRIMIDIN DNA GLYCOSYLASE, ... 著者 Schneider, S, Sadeghian, K, Flaig, D, Blank, I.D, Strasser, R, Stathis, D, Winnacker, M, Carell, T, Ochsenfeld, C. 登録日 2013-12-15 公開日 2014-06-04 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.05 Å) 主引用文献 Ribose-protonated DNA base excision repair: a combined theoretical and experimental study. Angew. Chem. Int. Ed. Engl., 53, 2014
4G4O	MutM containing M77A mutation bound to oxoG-containing DNA 分子名称: DNA (5'-D(*TP*GP*CP*GP*TP*CP*CP*(8OG)P*AP*GP*(TX2)P*CP*TP*AP*CP*C)-3'), DNA (5'-D(P*AP*GP*GP*TP*AP*GP*AP*CP*TP*CP*GP*GP*AP*CP*GP*C)-3'), Formamidopyrimidine-DNA glycosylase, ... 著者 Sung, R.J, Zhang, M, Qi, Y, Verdine, G.L. 登録日 2012-07-16 公開日 2013-02-20 最終更新日 2013-04-24 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Structural and Biochemical Analysis of DNA Helix Invasion by the Bacterial 8-Oxoguanine DNA Glycosylase MutM. J.Biol.Chem., 288, 2013
4G4R	MutM containing F114A mutation bound to oxoG-containing DNA 分子名称: DNA (5'-D(*TP*GP*CP*GP*TP*CP*CP*(8OG)P*AP*GP*(TX2)P*CP*TP*AP*CP*C)-3'), DNA (5'-D(P*AP*GP*GP*TP*AP*GP*AP*CP*TP*CP*GP*GP*AP*CP*GP*C)-3'), Formamidopyrimidine-DNA glycosylase, ... 著者 Sung, R.J, Zhang, M, Qi, Y, Verdine, G.L. 登録日 2012-07-16 公開日 2013-02-20 最終更新日 2013-04-24 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Structural and Biochemical Analysis of DNA Helix Invasion by the Bacterial 8-Oxoguanine DNA Glycosylase MutM. J.Biol.Chem., 288, 2013
4G4N	MutM containing M77A mutation bound to undamaged DNA 分子名称: DNA (5'-D(*TP*GP*CP*GP*TP*CP*CP*GP*AP*GP*(TX2)P*CP*TP*AP*CP*C)-3'), DNA (5'-D(P*AP*GP*GP*TP*AP*GP*AP*CP*TP*CP*GP*GP*AP*CP*GP*C)-3'), Formamidopyrimidine-DNA glycosylase, ... 著者 Sung, R.J, Zhang, M, Qi, Y, Verdine, G.L. 登録日 2012-07-16 公開日 2013-02-20 最終更新日 2013-11-20 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 Structural and Biochemical Analysis of DNA Helix Invasion by the Bacterial 8-Oxoguanine DNA Glycosylase MutM. J.Biol.Chem., 288, 2013
2F5N	MutM crosslinked to undamaged DNA sampling A:T base pair IC1 分子名称: 5'-D(*AP*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', 5'-D(*TP*GP*C*GP*TP*CP*CP*AP*GP*GP*TP*CP*TP*AP*CP*C)-3', GLYCEROL, ... 著者 Banerjee, A, Santos, W.L, Verdine, G.L. 登録日 2005-11-26 公開日 2006-03-07 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structure of a DNA glycosylase searching for lesions. Science, 311, 2006
2F5O	MutM crosslinked to undamaged DNA sampling G:C base pair IC3 分子名称: 5'-D(*AP*GP*GP*TP*AP*GP*AP*TP*CP*CP*GP*GP*AP*CP*GP*C)-3', 5'-D(*TP*GP*C*GP*TP*CP*CP*GP*GP*AP*TP*CP*TP*AP*CP*C)-3', GLYCEROL, ... 著者 Banerjee, A, Santos, W.L, Verdine, G.L. 登録日 2005-11-26 公開日 2006-03-07 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (2.05 Å) 主引用文献 Structure of a DNA glycosylase searching for lesions. Science, 311, 2006
2F5S	Catalytically inactive (E3Q) MutM crosslinked to oxoG:C containing DNA CC1 分子名称: 5'-D(*AP*GP*GP*TP*AP*GP*AP*CP*TP*CP*GP*GP*AP*CP*GP*C)-3', 5'-D(*TP*GP*C*GP*TP*CP*CP*(8OG)P*AP*GP*TP*CP*TP*AP*CP*C)-3', ZINC ION, ... 著者 Banerjee, A, Santos, W.L, Verdine, G.L. 登録日 2005-11-26 公開日 2006-03-07 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (2.35 Å) 主引用文献 Structure of a DNA glycosylase searching for lesions. Science, 311, 2006
2F5Q	Catalytically inactive (E3Q) MutM crosslinked to oxoG:C containing DNA CC2 分子名称: 5'-D(*AP*GP*G*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', 5'-D(*TP*GP*CP*G*TP*CP*CP*AP*(8OG)P*GP*TP*CP*TP*AP*CP*C)-3', ZINC ION, ... 著者 Banerjee, A, Santos, W.L, Verdine, G.L. 登録日 2005-11-26 公開日 2006-03-07 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (2.35 Å) 主引用文献 Structure of a DNA glycosylase searching for lesions. Science, 311, 2006
2EA0	Crystal structure of the DNA repair enzyme endonuclease-VIII (Nei) from E. coli in complex with AP-site containing DNA substrate 分子名称: 5'-D(P*CP*AP*GP*GP*AP*(PED)P*GP*AP*AP*GP*CP*C)-3', 5'-D(P*GP*GP*CP*TP*TP*CP*AP*TP*CP*CP*TP*G)-3', Endonuclease VIII, ... 著者 Golan, G, Zharov, D.O, Grollman, A.P, Shoham, G. 登録日 2007-01-29 公開日 2008-02-26 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.4 Å) 主引用文献 Active site plasticity of endonuclease VIII: Conformational changes compensating for different substrate and mutations of critical residues To be Published
2F5P	MutM crosslinked to undamaged DNA sampling A:T base pair IC2 分子名称: 5'-D(*AP*GP*GP*TP*AP*GP*AP*CP*TP*TP*GP*GP*AP*CP*GP*C)-3', 5'-D(*TP*GP*CP*G*TP*CP*CP*AP*AP*GP*TP*CP*TP*AP*CP*C)-3', ZINC ION, ... 著者 Banerjee, A, Santos, W.L, Verdine, G.L. 登録日 2005-11-26 公開日 2006-03-07 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structure of a DNA glycosylase searching for lesions. Science, 311, 2006
6ROK	The crystal structure of a complex between the LlFpg protein, a THF-DNA and an inhibitor 分子名称: 2,8-dithioxo-1,2,3,7,8,9-hexahydro-6H-purin-6-one, DNA (5'-D(*CP*TP*CP*TP*TP*TP*(3DR)P*TP*TP*TP*CP*TP*CP*G)-3'), DNA (5'-D(*GP*CP*GP*AP*GP*AP*AP*AP*CP*AP*AP*AP*GP*A)-3'), ... 著者 Coste, F, Goffinont, S, Castaing, B. 登録日 2019-05-13 公開日 2020-04-15 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Thiopurine Derivative-Induced Fpg/Nei DNA Glycosylase Inhibition: Structural, Dynamic and Functional Insights. Int J Mol Sci, 21, 2020
6RNR	The crystal structure of a complex between the LlFpg protein, a THF-DNA and an inhibitor 分子名称: 2-(trifluoromethyl)-9~{H}-purine-6-thiol, DNA (5'-D(*CP*TP*CP*TP*TP*TP*(3DR)P*TP*TP*TP*CP*TP*CP*G)-3'), DNA (5'-D(*GP*CP*GP*AP*GP*AP*AP*AP*CP*AP*AP*AP*GP*A)-3'), ... 著者 Coste, F, Goffinont, S, Castaing, B. 登録日 2019-05-09 公開日 2020-04-15 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (2.003 Å) 主引用文献 Thiopurine Derivative-Induced Fpg/Nei DNA Glycosylase Inhibition: Structural, Dynamic and Functional Insights. Int J Mol Sci, 21, 2020
6TC6	Crystal structure of MutM from Neisseria meningitidis 分子名称: Formamidopyrimidine-DNA glycosylase, ZINC ION 著者 Silhan, J, Landova, B, Boura, E. 登録日 2019-11-05 公開日 2020-10-14 最終更新日 2024-05-15 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Conformational changes of DNA repair glycosylase MutM triggered by DNA binding. Febs Lett., 594, 2020
6TC9	Crystal structure of MutM from Neisseria meningitidis 分子名称: DNA, DNA containing abasic site analogue, Formamidopyrimidine-DNA glycosylase, ... 著者 Silhan, J, Landova, B, Boura, E. 登録日 2019-11-05 公開日 2020-09-16 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (2.175 Å) 主引用文献 Conformational changes of DNA repair glycosylase MutM triggered by DNA binding. Febs Lett., 594, 2020
6RNO	Crystal structure of a complex between the LlFpg protein, a THF-DNA and an inhibitor 分子名称: 2-sulfanylidene-1,7-dihydropyrrolo[2,3-d]pyrimidin-4-one, DNA (5'-D(*CP*TP*CP*TP*TP*TP*(3DR)P*TP*TP*TP*CP*TP*CP*G)-3'), DNA (5'-D(*GP*CP*GP*AP*GP*AP*AP*AP*CP*AP*AP*AP*GP*A)-3'), ... 著者 Coste, F, Goffinont, S, Castaing, B. 登録日 2019-05-09 公開日 2020-04-15 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (2.25 Å) 主引用文献 Thiopurine Derivative-Induced Fpg/Nei DNA Glycosylase Inhibition: Structural, Dynamic and Functional Insights. Int J Mol Sci, 21, 2020
6RNM	Crystal structure of a complex between the LlFpg protein, a THF-DNA and an inhibitor 分子名称: 6-azanyl-9~{H}-purine-8-thiol, DNA (5'-D(*CP*TP*CP*TP*TP*TP*(3DR)P*TP*TP*TP*CP*TP*CP*G)-3'), DNA (5'-D(*GP*CP*GP*AP*GP*AP*AP*AP*CP*AP*AP*AP*GP*A)-3'), ... 著者 Coste, F, Goffinont, S, Castaing, B. 登録日 2019-05-09 公開日 2020-04-15 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.76 Å) 主引用文献 Thiopurine Derivative-Induced Fpg/Nei DNA Glycosylase Inhibition: Structural, Dynamic and Functional Insights. Int J Mol Sci, 21, 2020
6RP0	The crystal structure of a complex between the LlFpg protein, a THF-DNA and an inhibitor 分子名称: 2,8-dithioxo-1,2,3,7,8,9-hexahydro-6H-purin-6-one, DNA (5'-D(*CP*TP*CP*TP*TP*TP*(3DR)P*TP*TP*TP*CP*TP*CP*G)-3'), DNA (5'-D(*GP*CP*GP*AP*GP*AP*AP*AP*CP*AP*AP*AP*GP*A)-3'), ... 著者 Coste, F, Goffinont, S, Castaing, B. 登録日 2019-05-13 公開日 2020-04-15 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (2.25 Å) 主引用文献 Thiopurine Derivative-Induced Fpg/Nei DNA Glycosylase Inhibition: Structural, Dynamic and Functional Insights. Int J Mol Sci, 21, 2020
1K3X	Crystal structure of a trapped reaction intermediate of the DNA repair enzyme Endonuclease VIII with Brominated-DNA 分子名称: 5'-D(*CP*CP*AP*GP*GP*AP*(PED)P*GP*AP*AP*GP*CP*C)-3', 5'-D(*GP*GP*CP*(BRU)P*(BRU)P*CP*AP*(BRU)P*CP*CP*(BRU)P*GP*G)-3', Endonuclease VIII, ... 著者 Golan, G, Zharkov, D.O, Gilboa, R, Fernandes, A.S, Kycia, J.H, Gerchman, S.E, Rieger, R.A, Grollman, A.P, Shoham, G. 登録日 2001-10-04 公開日 2002-10-04 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (1.25 Å) 主引用文献 Structural analysis of an Escherichia coli endonuclease VIII covalent reaction intermediate. EMBO J., 21, 2002
1K82	Crystal structure of E.coli formamidopyrimidine-DNA glycosylase (Fpg) covalently trapped with DNA 分子名称: 5'-D(*CP*CP*AP*GP*GP*AP*(PED)P*GP*AP*AP*GP*CP*C)-3', 5'-D(*GP*GP*CP*TP*TP*CP*CP*TP*CP*CP*TP*GP*G)-3', ZINC ION, ... 著者 Gilboa, R, Zharkov, D.O, Golan, G, Fernandes, A.S, Gerchman, S.E, Matz, E, Kycia, J.H, Grollman, A.P, Shoham, G. 登録日 2001-10-22 公開日 2002-06-14 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Structure of formamidopyrimidine-DNA glycosylase covalently complexed to DNA. J.Biol.Chem., 277, 2002
1KFV	Crystal Structure of Lactococcus lactis Formamido-pyrimidine DNA Glycosylase (alias Fpg or MutM) Non Covalently Bound to an AP Site Containing DNA. 分子名称: 5'-D(*CP*TP*CP*TP*TP*TP*(PDI)P*TP*TP*TP*CP*TP*C)-3', 5'-D(*GP*AP*GP*AP*AP*AP*CP*AP*AP*AP*GP*AP*G)-3', Formamido-pyrimidine DNA glycosylase, ... 著者 Serre, L, Pereira de Jesus, K, Boiteux, S, Zelwer, C, Castaing, B. 登録日 2001-11-23 公開日 2002-06-14 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.55 Å) 主引用文献 Crystal structure of the Lactococcus lactis formamidopyrimidine-DNA glycosylase bound to an abasic site analogue-containing DNA. EMBO J., 21, 2002
1L1Z	MutM (Fpg) Covalent-DNA Intermediate 分子名称: 5'-D(*AP*G*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', 5'-D(*TP*GP*C*GP*TP*CP*CP*AP*(PED)P*GP*TP*CP*TP*AP*CP*C)-3', MutM, ... 著者 Fromme, J.C, Verdine, G.L. 登録日 2002-02-20 公開日 2002-06-14 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Structural insights into lesion recognition and repair by the bacterial 8-oxoguanine DNA glycosylase MutM. Nat.Struct.Biol., 9, 2002
1L2B	MutM (Fpg) DNA End-Product Structure 分子名称: 5'-D(*AP*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', 5'-D(*TP*GP*CP*GP*TP*CP*C*(AD2))-3', 5'-D(P*GP*TP*CP*TP*AP*CP*C)-3', ... 著者 Fromme, J.C, Verdine, G.L. 登録日 2002-02-20 公開日 2002-06-14 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Structural insights into lesion recognition and repair by the bacterial 8-oxoguanine DNA glycosylase MutM. Nat.Struct.Biol., 9, 2002
1K3W	Crystal structure of a trapped reaction intermediate of the DNA Repair Enzyme Endonuclease VIII with DNA 分子名称: 5'-D(*CP*CP*AP*GP*GP*AP*(PED)P*GP*AP*AP*GP*CP*C)-3', 5'-D(*GP*GP*CP*TP*TP*CP*AP*TP*CP*CP*TP*GP*G)-3', Endonuclease VIII, ... 著者 Golan, G, Zharkov, D.O, Gilboa, R, Fernandes, A.S, Kycia, J.H, Gerchman, S.E, Rieger, R.A, Grollman, A.P, Shoham, G. 登録日 2001-10-04 公開日 2002-10-04 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (1.42 Å) 主引用文献 Structural analysis of an Escherichia coli endonuclease VIII covalent reaction intermediate. EMBO J., 21, 2002
1L2C	MutM (Fpg)-DNA Estranged Thymine Mismatch Recognition Complex 分子名称: 5'-D(*AP*G*GP*TP*AP*GP*AP*CP*TP*TP*GP*GP*AP*CP*GP*C)-3', 5'-D(*TP*GP*C*GP*TP*CP*CP*AP*(HPD)P*GP*TP*CP*TP*AP*CP*C)-3', MutM, ... 著者 Fromme, J.C, Verdine, G.L. 登録日 2002-02-20 公開日 2002-06-14 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Structural insights into lesion recognition and repair by the bacterial 8-oxoguanine DNA glycosylase MutM. Nat.Struct.Biol., 9, 2002

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