PDB: 13252 件ウェブページステータス検索Chemie searchBIRD

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4RT3	Ternary complex crystal structure of DNA polymerase Beta with (alpha, beta)-NH-(beta,gamma)-CH2-dTTP 分子名称: 2'-deoxy-5'-O-[(S)-hydroxy{[(R)-hydroxy(phosphonomethyl)phosphoryl]amino}phosphoryl]-3,4-dihydrothymidine, CHLORIDE ION, DNA (5'-D(*CP*CP*GP*AP*CP*AP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), ... 著者 Batra, V.K, Wilson, S.H. 登録日 2014-11-12 公開日 2015-07-01 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.92 Å) 主引用文献 Two Scaffolds from Two Flips: (alpha, beta)/(beta, gamma) CH2/NH "Met-Im" Analogues of dTTP. Org.Lett., 17, 2015
4RT2	Ternary complex crystal structure of DNA polymerase Beta with (alpha,beta)-CH2-(beta,gamma)-NH-dTTP 分子名称: 2'-deoxy-5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonoamino)phosphoryl]methyl}phosphoryl]-3,4-dihydrothymidine, CHLORIDE ION, DNA (5'-D(*CP*CP*GP*AP*CP*AP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), ... 著者 Batra, V.K, Wilson, S.H. 登録日 2014-11-12 公開日 2015-07-01 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.92 Å) 主引用文献 Two Scaffolds from Two Flips: (alpha, beta)/(beta, gamma) CH2/NH "Met-Im" Analogues of dTTP. Org.Lett., 17, 2015
5ZUH	Solution structure of RRM domain of La protein from Trypanosoma brucei 分子名称: RNA binding protein La-like protein 著者 Shan, F.Z. 登録日 2018-05-07 公開日 2019-05-15 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 A telomerase subunit homolog La protein from Trypanosoma brucei plays an essential role in ribosomal biogenesis. Febs J., 286, 2019
4I1T	Crystal structure of the cap-snatching endonuclease from Pichinde virus 分子名称: RNA-directed RNA polymerase L 著者 Bussetta, C, Choi, K.H. 登録日 2012-11-21 公開日 2014-02-26 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Crystal structure of the cap-snatching endonuclease from Pichinde virus, a new world arenavirus To be Published
6NBW	Ternary Complex of Beta/Gamma-Actin with Profilin and AnCoA-NAA80 分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, ADENOSINE-5'-TRIPHOSPHATE, Actin, ... 著者 Rebowski, G, Boczkowska, M, Dominguez, R. 登録日 2018-12-10 公開日 2020-01-29 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Mechanism of actin N-terminal acetylation. Sci Adv, 6, 2020
6NAS	Ternary Complex of Ac-Alpha-Actin with Profilin and AcCoA-NAA80 分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, ACETYL COENZYME *A, ADENOSINE-5'-TRIPHOSPHATE, ... 著者 Rebowski, G, Boczkowska, M, Dominguez, R. 登録日 2018-12-06 公開日 2020-01-29 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Mechanism of actin N-terminal acetylation. Sci Adv, 6, 2020
7PRE	Solution structure of the NRDI domain of Nab3 分子名称: HLJ1_G0022400.mRNA.1.CDS.1 著者 Chaves-Arquero, B, Martinez-Lumbreras, S, Perez-Canadillas, J.M. 登録日 2021-09-21 公開日 2022-01-12 最終更新日 2024-06-19 実験手法 SOLUTION NMR 主引用文献 Structural basis of Nrd1-Nab3 heterodimerization. Life Sci Alliance, 5, 2022
6NBE	Ternary Complex of Ac-Alpha-Actin with Profilin and CoA-NAA80 分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, ADENOSINE-5'-TRIPHOSPHATE, Actin, ... 著者 Rebowski, G, Boczkowska, M, Dominguez, R. 登録日 2018-12-07 公開日 2020-04-15 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Mechanism of actin N-terminal acetylation. Sci Adv, 6, 2020
3PMN	ternary crystal structure of polymerase lambda variant with a GT mispair at the primer terminus with Mn2+ in the active site 分子名称: 2'-deoxy-5'-O-[(R)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]guanosine, 5'-D(*CP*AP*GP*TP*AP*G)-3', 5'-D(*CP*GP*GP*CP*CP*TP*TP*AP*CP*TP*G)-3', ... 著者 Bebenek, K, Pedersen, L.C, Kunkel, T.A. 登録日 2010-11-17 公開日 2011-02-02 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Replication infidelity via a mismatch with Watson-Crick geometry. Proc.Natl.Acad.Sci.USA, 108, 2011
7Z27	Crystal structure of the SPOC domain of human RBM15 分子名称: RNA-binding protein 15 著者 Grishkovskaya, I, Appel, L.M, Djinovic-Carugo, K, Slade, D. 登録日 2022-02-25 公開日 2022-12-07 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.45 Å) 主引用文献 The SPOC domain is a phosphoserine binding module that bridges transcription machinery with co- and post-transcriptional regulators. Nat Commun, 14, 2023
5SUQ	Crystal structure of the THO-Sub2 complex 分子名称: 12-TUNGSTOPHOSPHATE, ATP-dependent RNA helicase SUB2, Tex1, ... 著者 Ren, Y, Blobel, G. 登録日 2016-08-03 公開日 2017-01-18 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (6 Å) 主引用文献 Structural and biochemical analyses of the DEAD-box ATPase Sub2 in association with THO or Yra1. Elife, 6, 2017
5URN	NMR structure of the complex between the PH domain of the Tfb1 subunit from TFIIH and the transactivation domain 1 of p65 分子名称: RNA polymerase II transcription factor B subunit 1, Transcription factor p65 著者 Lecoq, L, Omichinski, J.G, Raiola, L, Cyr, N, Chabot, P, Arseneault, G, Legault, P. 登録日 2017-02-11 公開日 2017-03-08 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Structural characterization of interactions between transactivation domain 1 of the p65 subunit of NF-kappa B and transcription regulatory factors. Nucleic Acids Res., 45, 2017
1OU5	Crystal structure of human CCA-adding enzyme 分子名称: tRNA CCA-adding enzyme 著者 Augustin, M.A, Reichert, A.S, Betat, H, Huber, R, Moerl, M, Steegborn, C. 登録日 2003-03-24 公開日 2003-05-06 最終更新日 2017-10-11 実験手法 X-RAY DIFFRACTION (3.4 Å) 主引用文献 Crystal Structure of the Human CCA-adding Enzyme: Insights into Template-independent Polymerization J.Mol.Biol., 328, 2003
5EMX	Crystal structure of the S. cerevisiae Rtf1 histone modification domain mutant R124A R126A R128A 分子名称: RNA polymerase-associated protein RTF1 著者 Wier, A.D, Heroux, A, VanDemark, A.P. 登録日 2015-11-06 公開日 2016-10-26 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (1.399 Å) 主引用文献 The Histone Modification Domain of Paf1 Complex Subunit Rtf1 Directly Stimulates H2B Ubiquitylation through an Interaction with Rad6. Mol.Cell, 64, 2016
3FKE	Structure of the Ebola VP35 Interferon Inhibitory Domain 分子名称: Polymerase cofactor VP35 著者 Amarasinghe, G.K, Leung, D.W, Ginder, N.D, Honzatko, R.B, Nix, J, Basler, C.F, Fulton, D.B. 登録日 2008-12-16 公開日 2009-01-13 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.4 Å) 主引用文献 Structure of the Ebola VP35 interferon inhibitory domain. Proc.Natl.Acad.Sci.USA, 106, 2009
7Y5M	The OTU domain of Tacheng Tick Virus 1 分子名称: RNA-directed RNA polymerase 著者 Li, Z, Wang, W.J, Xiao, Y.S, Sun, L.T. 登録日 2022-06-17 公開日 2023-06-21 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 The OTU domain of Tacheng Tick Virus 1 To Be Published
7YZV	Ryegrass mottle virus serine protease domain S159A mutant 分子名称: RNA-directed RNA polymerase 著者 Kalnins, G. 登録日 2022-02-21 公開日 2022-03-02 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 VPg Impact on Ryegrass Mottle Virus Serine-like 3C Protease Proteolysis and Structure. Int J Mol Sci, 24, 2023
3DGP	Crystal Structure of the complex between Tfb5 and the C-terminal domain of Tfb2 分子名称: RNA polymerase II transcription factor B subunit 2, RNA polymerase II transcription factor B subunit 5 著者 Kainov, D.E, Cavarelli, J, Egly, J.M, Poterszman, A. 登録日 2008-06-14 公開日 2008-08-19 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Structural basis for group A trichothiodystrophy Nat.Struct.Mol.Biol., 15, 2008
3DOM	Crystal Structure of the complex between Tfb5 and the C-terminal domain of Tfb2 分子名称: RNA polymerase II transcription factor B subunit 2, RNA polymerase II transcription factor B subunit 5 著者 Kainov, D.E, Cavarelli, J, Egly, J.M, Poterszman, A. 登録日 2008-07-04 公開日 2008-08-19 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Structural basis for group A trichothiodystrophy Nat.Struct.Mol.Biol., 15, 2008
4OWR	Vesiculoviral matrix (M) protein occupies nucleic acid binding site at nucleoporin pair Rae1-Nup98 分子名称: Matrix protein, Nuclear pore complex protein Nup98-Nup96, mRNA export factor 著者 Ren, Y, Quan, B, Seo, H.S, Blobel, G. 登録日 2014-02-03 公開日 2014-06-25 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (3.15 Å) 主引用文献 Vesiculoviral matrix (M) protein occupies nucleic acid binding site at nucleoporin pair (Rae1 Nup98). Proc.Natl.Acad.Sci.USA, 111, 2014
2B7E	First FF domain of Prp40 Yeast Protein 分子名称: Pre-mRNA processing protein PRP40 著者 Gasch, A, Wiesner, S, Martin-Malpartida, P, Ramirez-Espain, X, Ruiz, L, Macias, M.J. 登録日 2005-10-04 公開日 2005-11-01 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 The structure of Prp40 FF1 domain and its interaction with the crn-TPR1 motif of Clf1 gives a new insight into the binding mode of FF domains. J.Biol.Chem., 281, 2006
4TQS	Ternary complex of Y-family DNA polymerase Dpo4 with (5'S)-8,5'-Cyclo-2'-deoxyguanosine and dCTP 分子名称: 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE, 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, DNA (5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*T)-3'), ... 著者 Zhao, L. 登録日 2014-06-11 公開日 2015-01-14 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (2.06 Å) 主引用文献 Kinetic and Structural Mechanisms of (5'S)-8,5'-Cyclo-2'-deoxyguanosine-Induced DNA Replication Stalling. Biochemistry, 54, 2015
4TQR	Ternary complex of Y-family DNA polymerase Dpo4 with (5'S)-8,5'-Cyclo-2'-deoxyguanosine and dTTP 分子名称: 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE, CALCIUM ION, DNA (5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*T)-3'), ... 著者 Zhao, L. 登録日 2014-06-11 公開日 2015-01-14 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (1.58 Å) 主引用文献 Kinetic and Structural Mechanisms of (5'S)-8,5'-Cyclo-2'-deoxyguanosine-Induced DNA Replication Stalling. Biochemistry, 54, 2015
4KHQ	Ternary complex of RB69 mutant L415F wit DUMPNPP 分子名称: 2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(*AP*CP*AP*GP*GP*TP*AP*AP*GP*CP*AP*GP*TP*CP*CP*GP*CP*G)-3'), ... 著者 Clausen, A.R, Pedersen, L.C. 登録日 2013-05-01 公開日 2013-10-09 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.186 Å) 主引用文献 Structure-function analysis of ribonucleotide bypass by B family DNA replicases. Proc.Natl.Acad.Sci.USA, 110, 2013
6BEM	Ternary complex crystal structure of DNA polymerase Beta with S-isomer of beta-gamma-CHCL-dCTP 分子名称: 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE, 5'-O-[(R)-{[(R)-[(S)-chloro(phosphono)methyl](hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]-2'-deoxycytidine, CHLORIDE ION, ... 著者 Batra, V.K, Wilson, S.H. 登録日 2017-10-25 公開日 2018-10-31 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (1.88 Å) 主引用文献 Mapping Functional Substrate-Enzyme Interactions in the pol beta Active Site through Chemical Biology: Structural Responses to Acidity Modification of Incoming dNTPs. Biochemistry, 57, 2018

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