PDB: 45817 件ウェブページステータス検索Chemie searchBIRD

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1FVI	CRYSTAL STRUCTURE OF CHLORELLA VIRUS DNA LIGASE-ADENYLATE 分子名称: ADENOSINE MONOPHOSPHATE, CHLORELLA VIRUS DNA LIGASE-ADENYLATE, SULFATE ION 著者 Odell, M, Sriskanda, V, Shuman, S, Nikolov, D.B. 登録日 2000-09-20 公開日 2000-11-22 最終更新日 2021-11-03 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Crystal structure of eukaryotic DNA ligase-adenylate illuminates the mechanism of nick sensing and strand joining. Mol.Cell, 6, 2000
3OR3	Restriction endonuclease HPY188I in complex with product DNA 分子名称: 5'-D(*GP*AP*TP*CP*T)-3', 5'-D(*GP*TP*TP*CP*A)-3', 5'-D(P*GP*AP*AP*C)-3', ... 著者 Sokolowska, M, Czapinska, H, Bochtler, M. 登録日 2010-09-06 公開日 2010-10-20 最終更新日 2023-12-06 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Hpy188I-DNA pre- and post-cleavage complexes--snapshots of the GIY-YIG nuclease mediated catalysis. Nucleic Acids Res., 39, 2011
7X5M	Tir-dsDNA complex, the initial binding state 分子名称: 2',3'- cyclic AMP, DNA (5'-D(P*AP*TP*TP*AP*A)-3'), DNA (5'-D(P*AP*TP*TP*TP*A)-3'), ... 著者 Tan, Y, Xu, C, Yu, D, Song, W, Wu, B, Schulze-Lefert, P, Chai, J. 登録日 2022-03-05 公開日 2022-06-01 最終更新日 2024-06-26 実験手法 ELECTRON MICROSCOPY (3.42 Å) 主引用文献 TIR domains of plant immune receptors are 2',3'-cAMP/cGMP synthetases mediating cell death. Cell, 185, 2022
1R2Z	MutM (Fpg) bound to 5,6-dihydrouracil (DHU) containing DNA 分子名称: 5'-D(*AP*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', 5'-D(*TP*GP*CP*GP*TP*CP*CP*AP*(DHU)P*GP*TP*CP*TP*AP*CP*C)-3', MutM, ... 著者 Fromme, J.C, Verdine, G.L. 登録日 2003-09-30 公開日 2003-10-14 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (1.63 Å) 主引用文献 DNA Lesion Recognition by the Bacterial Repair Enzyme MutM. J.Biol.Chem., 278, 2003
1OE4	Xenopus SMUG1, an anti-mutator uracil-DNA Glycosylase 分子名称: 5'-D(*CP*CP*CP*GP*TP*GP*AP*GP*TP*CP*CP*G)-3', 5'-D(*CP*GP*GP*AP*CP*TP*3DR*AP*CP*GP*GP*G)-3', GLYCEROL, ... 著者 Wibley, J.E.A, Pearl, L.H. 登録日 2003-03-19 公開日 2003-07-11 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structure and Specificity of the Vertebrate Anti-Mutator Uracil-DNA Glycosylase Smug1 Mol.Cell, 11, 2003
4F8I	Three-dimensional DNA lattices with non-canonical base pairs 分子名称: COBALT HEXAMMINE(III), DNA (5'-D(*G*CP*GP*AP*AP*AP*GP*GP*GP*CP*AP*CP*GP*TP*GP*CP*CP*CP*T)-3') 著者 Paukstelis, P.J, Muser, S.E. 登録日 2012-05-17 公開日 2012-07-25 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Three-Dimensional DNA Crystals with pH-Responsive Noncanonical Junctions. J.Am.Chem.Soc., 134, 2012
3UQ8	Structure of adenylation domain of Haemophilus influenzae DNA ligases bound to NAD+ in adenylated state. 分子名称: ADENOSINE MONOPHOSPHATE, DNA ligase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE 著者 Lahiri, S.D. 登録日 2011-11-19 公開日 2012-01-25 最終更新日 2014-11-12 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Structure Guided Understanding of NAD(+) Recognition in Bacterial DNA Ligases. Acs Chem.Biol., 7, 2012
4B3Q	Structures of HIV-1 RT and RNA-DNA Complex Reveal a Unique RT Conformation and Substrate Interface 分子名称: 11-CYCLOPROPYL-5,11-DIHYDRO-4-METHYL-6H-DIPYRIDO[3,2-B:2',3'-E][1,4]DIAZEPIN-6-ONE, P51 RT, PRIMER DNA, ... 著者 Lapkouski, M, Tian, L, Miller, J.T, Le Grice, S.F.J, Yang, W. 登録日 2012-07-25 公開日 2013-01-16 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (5 Å) 主引用文献 Complexes of HIV-1 RT, Nnrti and RNA/DNA Hybrid Reveal a Structure Compatible with RNA Degradation Nat.Struct.Mol.Biol., 20, 2013
1SC7	Human DNA Topoisomerase I (70 Kda) In Complex With The Indenoisoquinoline MJ-II-38 and Covalent Complex With A 22 Base Pair DNA Duplex 分子名称: 4-(5,11-DIOXO-5H-INDENO[1,2-C]ISOQUINOLIN-6(11H)-YL)BUTANOATE, 5'-D(*(TGP)P*GP*AP*AP*AP*AP*AP*TP*TP*TP*TP*T)-3', 5'-D(*AP*AP*AP*AP*AP*GP*AP*CP*TP*T)-3', ... 著者 Staker, B.L, Feese, M.D, Cushman, M, Pommier, Y, Zembower, D, Stewart, L, Burgin, A.B. 登録日 2004-02-11 公開日 2005-04-19 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Structures of three classes of anticancer agents bound to the human topoisomerase I-DNA covalent complex J.Med.Chem., 48, 2005
3MR2	Human DNA polymerase eta in complex with normal DNA and incoming nucleotide (Nrm) 分子名称: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]adenosine, DNA (5'-D(*T*CP*AP*TP*TP*AP*TP*GP*AP*CP*GP*CP*T)-3'), DNA (5'-D(*TP*AP*GP*CP*GP*TP*CP*AP*T)-3'), ... 著者 Biertumpfel, C, Zhao, Y, Ramon-Maiques, S, Gregory, M.T, Lee, J.Y, Yang, W. 登録日 2010-04-28 公開日 2010-06-30 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.83 Å) 主引用文献 Structure and mechanism of human DNA polymerase eta. Nature, 465, 2010
1AC3	SOLUTION STRUCTURE OF AN RNA-DNA HYBRID DUPLEX CONTAINING A 3'-THIOFORMACETAL LINKER AND AN RNA A-TRACT, NMR, 8 STRUCTURES 分子名称: ANTISENSE HYBRID DUPLEX, DNA (5'-D(*(TCP)P*TP*GP*CP*GP*C)-3') 著者 Cross, C.W, Rice, J.S, Gao, X. 登録日 1997-02-11 公開日 1997-06-16 最終更新日 2024-04-10 実験手法 SOLUTION NMR 主引用文献 Solution structure of an RNA x DNA hybrid duplex containing a 3'-thioformacetal linker and an RNA A-tract. Biochemistry, 36, 1997
1AGL	STRUCTURE OF A DNA-BISDAUNOMYCIN COMPLEX 分子名称: 4-METHYLBENZYL-N-BIS[DAUNOMYCIN], DNA (5'-D(*CP*GP*AP*TP*CP*G)-3') 著者 Hu, G.G, Shui, X, Leng, F, Priebe, W, Chaires, J.B, Williams, L.D. 登録日 1997-03-25 公開日 1997-04-29 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Structure of a DNA-bisdaunomycin complex. Biochemistry, 36, 1997
1SEU	Human DNA Topoisomerase I (70 Kda) In Complex With The Indolocarbazole SA315F and Covalent Complex With A 22 Base Pair DNA Duplex 分子名称: 2,10-DIHYDROXY-12-(BETA-D-GLUCOPYRANOSYL)-6,7,12,13-TETRAHYDROINDOLO[2,3-A]PYRROLO[3,4-C]CARBAZOLE-5,7-DIONE, 5'-D(*(TGP)P*GP*AP*AP*AP*AP*AP*TP*TP*TP*TP*T)-3', 5'-D(*AP*AP*AP*AP*AP*GP*AP*CP*TP*T)-3', ... 著者 Staker, B.L, Feese, M.D, Cushman, M, Pommier, Y, Zembower, D, Stewart, L, Burgin, A.B. 登録日 2004-02-18 公開日 2005-04-19 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Structures of three classes of anticancer agents bound to the human topoisomerase I-DNA covalent complex J.Med.Chem., 48, 2005
1PVS	3-methyladenine Glcosylase II(AlkA) Hypoxanthine complex 分子名称: 7-HYDROXY-PYRAZOLO[4,3-D]PYRIMIDINE, DNA-3-methyladenine glycosylase II 著者 Teale, M. 登録日 2003-06-28 公開日 2004-06-08 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 3-methyladenine-DNA glycosylase II: the crystal structure of an AlkA-hypoxanthine complex suggests the possibility of product inhibition. Bioconjug.Chem., 13, 2002
6IMJ	The crystal structure of Se-AsfvLIG:DNA complex 分子名称: ADENOSINE-5'-TRIPHOSPHATE, CADMIUM ION, CHLORIDE ION, ... 著者 Chen, Y.Q, Gan, J.H. 登録日 2018-10-23 公開日 2019-02-27 実験手法 X-RAY DIFFRACTION (2.554 Å) 主引用文献 Structure of the error-prone DNA ligase of African swine fever virus identifies critical active site residues. Nat Commun, 10, 2019
6GED	Adhesin domain of PrgB from Enterococcus faecalis bound to DNA 分子名称: 1,2-ETHANEDIOL, DNA (5'-D(P*CP*GP*GP*GP*CP*CP*GP*CP*CP*C)-3'), DNA (5'-D(P*GP*GP*GP*CP*GP*GP*CP*CP*CP*G)-3'), ... 著者 Schmitt, A, Berntsson, R.P.A. 登録日 2018-04-26 公開日 2018-05-16 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.794 Å) 主引用文献 PrgB promotes aggregation, biofilm formation, and conjugation through DNA binding and compaction. Mol. Microbiol., 109, 2018
3RAD	Quinolone(Clinafloxacin)-DNA cleavage complex of type IV topoisomerase from S. pneumoniae 分子名称: 5'-D(*CP*AP*TP*GP*AP*AP*T)-3', 5'-D(*CP*GP*TP*GP*CP*AP*T)-3', 5'-D(P*AP*GP*TP*CP*AP*TP*TP*CP*AP*TP*G)-3', ... 著者 Laponogov, I, Pan, X.-S, Veselkov, D.A, McAuley, K.E, Fisher, L.M, Sanderson, M.R. 登録日 2011-03-28 公開日 2012-04-25 最終更新日 2018-10-03 実験手法 X-RAY DIFFRACTION (3.35 Å) 主引用文献 Exploring the active site of the Streptococcus pneumoniae topoisomerase IV-DNA cleavage complex with novel 7,8-bridged fluoroquinolones. Open Biol, 6, 2016
193D	SOLUTION STRUCTURE OF A QUINOMYCIN BISINTERCALATOR-DNA COMPLEX 分子名称: 3-HYDROXYQUINALDIC ACID, DNA (5'-D(*AP*CP*AP*CP*GP*TP*GP*T)-3'), QUINOMYCIN 著者 Chen, H, Patel, D.J. 登録日 1994-09-30 公開日 1995-02-27 最終更新日 2017-11-01 実験手法 SOLUTION NMR 主引用文献 Solution Structure of a Quinomycin Bisintercalator-DNA Complex. J.Mol.Biol., 246, 1995
3RNU	Structural Basis of Cytosolic DNA Sensing by Innate Immune Receptors 分子名称: 1,2-ETHANEDIOL, DNA (5'-D(*GP*CP*CP*AP*TP*CP*AP*AP*AP*GP*AP*GP*AP*GP*AP*G)-3'), DNA (5'-D(*TP*CP*TP*CP*TP*CP*TP*TP*TP*GP*AP*TP*GP*GP*CP*C)-3'), ... 著者 Jin, T.C, Xiao, T. 登録日 2011-04-22 公開日 2012-04-25 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.502 Å) 主引用文献 Structures of the HIN Domain:DNA Complexes Reveal Ligand Binding and Activation Mechanisms of the AIM2 Inflammasome and IFI16 Receptor. Immunity, 36, 2012
1OE6	Xenopus SMUG1, an anti-mutator uracil-DNA Glycosylase 分子名称: 5'-D(*CP*CP*CP*GP*TP*GP*AP*GP*TP*CP*CP*G)-3', 5'-D(*CP*GP*GP*AP*CP*TP*3DRP*AP*CP*GP*GP*G)-3', 5-HYDROXYMETHYL URACIL, ... 著者 Wibley, J.E.A, Pearl, L.H. 登録日 2003-03-19 公開日 2003-07-11 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (2.65 Å) 主引用文献 Structure and Specificity of the Vertebrate Anti-Mutator Uracil-DNA Glycosylase Smug1 Mol.Cell, 11, 2003
1R2Y	MutM (Fpg) bound to 8-oxoguanine (oxoG) containing DNA 分子名称: 5'-D(*AP*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', 5'-D(*TP*GP*CP*GP*TP*CP*CP*AP*(8OG)P*GP*TP*CP*TP*AP*CP*C)-3', MutM, ... 著者 Fromme, J.C, Verdine, G.L. 登録日 2003-09-30 公開日 2003-10-14 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (2.34 Å) 主引用文献 DNA Lesion Recognition by the Bacterial Repair Enzyme MutM. J.Biol.Chem., 278, 2003
5E5O	I-SmaMI bound to uncleaved DNA target in the presence of Calcium ions 分子名称: 1,2-ETHANEDIOL, CALCIUM ION, DNA (25-MER), ... 著者 Shen, B.W. 登録日 2015-10-08 公開日 2016-01-13 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.36 Å) 主引用文献 The Structural Basis of Asymmetry in DNA Binding and Cleavage as Exhibited by the I-SmaMI LAGLIDADG Meganuclease. J.Mol.Biol., 428, 2016
3MR6	Human DNA polymerase eta - DNA ternary complex with a CPD 2bp upstream of the active site (TT4) 分子名称: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]guanosine, DNA (5'-D(*C*AP*TP*CP*AP*(TTD)P*AP*CP*GP*AP*GP*C)-3'), DNA (5'-D(*TP*CP*TP*CP*GP*TP*AP*AP*T)-3'), ... 著者 Biertumpfel, C, Zhao, Y, Ramon-Maiques, S, Gregory, M.T, Lee, J.Y, Yang, W. 登録日 2010-04-28 公開日 2010-06-30 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Structure and mechanism of human DNA polymerase eta. Nature, 465, 2010
4F8G	Three-dimensional DNA lattices with non-canonical base pairs 分子名称: COBALT HEXAMMINE(III), DNA (5'-D(*G*CP*GP*AP*AP*AP*GP*GP*GP*CP*AP*CP*GP*TP*GP*CP*CP*CP*T)-3') 著者 Paukstelis, P.J, Muser, S.E. 登録日 2012-05-17 公開日 2012-07-25 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.93 Å) 主引用文献 Three-Dimensional DNA Crystals with pH-Responsive Noncanonical Junctions. J.Am.Chem.Soc., 134, 2012
3MR3	Human DNA polymerase eta - DNA ternary complex with the 3'T of a CPD in the active site (TT1) 分子名称: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]adenosine, DNA (5'-D(*CP*AP*(TTD)P*AP*TP*GP*AP*CP*GP*CP*T)-3'), DNA (5'-D(*CP*AP*GP*CP*GP*TP*CP*AP*T)-3'), ... 著者 Biertumpfel, C, Zhao, Y, Ramon-Maiques, S, Gregory, M.T, Lee, J.Y, Yang, W. 登録日 2010-04-28 公開日 2010-06-30 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.75 Å) 主引用文献 Structure and mechanism of human DNA polymerase eta. Nature, 465, 2010

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