PDB: 46169 件ウェブページステータス検索Chemie searchBIRD

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4U92	Crystal structure of a DNA/Ba2+ G-quadruplex containing a water-mediated C-tetrad 分子名称: BARIUM ION, DNA (5'-D(*CP*CP*AP*KP*GP*CP*GP*TP*GP*G)-3'), MAGNESIUM ION 著者 Paukstelis, P.J, Zhang, D, Huang, T, Lukeman, P. 登録日 2014-08-05 公開日 2014-11-26 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Crystal structure of a DNA/Ba2+ G-quadruplex containing a water-mediated C-tetrad. Nucleic Acids Res., 42, 2014
4O5Y	O6-carboxymethylguanine in DNA forms a sequence context dependent wobble base pair structure with thymine 分子名称: BARIUM ION, DNA (5'-D(*CP*GP*CP*(C6G)P*AP*AP*TP*TP*TP*GP*CP*G)-3'), POTASSIUM ION 著者 Zhang, F, Tsunoda, M, Suzuki, K, Kikuchi, Y, Wilkinson, O, Millington, C.L, Margison, G.P, Williams, D.M, Takenaka, A. 登録日 2013-12-20 公開日 2014-07-02 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (1.75 Å) 主引用文献 O(6)-Carboxymethylguanine in DNA forms a sequence context-dependent wobble base-pair structure with thymine Acta Crystallogr.,Sect.D, 70, 2014
8YZS	Structure of the NACC1 BEN domain in complex with its target DNA 分子名称: CATG-containing DNA, Nucleus accumbens-associated protein 1 著者 Ren, J, Wang, Z. 登録日 2024-04-08 公開日 2024-09-25 実験手法 X-RAY DIFFRACTION (2.31 Å) 主引用文献 Structural basis of DNA recognition by BEN domain proteins reveals a role for oligomerization in unmethylated DNA selection by BANP. Nucleic Acids Res., 2024
4O5X	O6-carboxymethylguanine in DNA forms a sequence context dependent wobble base pair structure with thymine. 分子名称: 2'-(4-HYDROXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE, DNA (5'-D(*CP*GP*CP*(C6G)P*AP*AP*TP*TP*TP*GP*CP*G)-3'), MAGNESIUM ION 著者 Zhang, F, Tsunoda, M, Suzuki, K, Kikuchi, Y, Wilkinson, O, Millington, C.L, Margison, G.P, Williams, D.M, Takenaka, A. 登録日 2013-12-20 公開日 2014-07-02 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 O(6)-Carboxymethylguanine in DNA forms a sequence context-dependent wobble base-pair structure with thymine Acta Crystallogr.,Sect.D, 70, 2014
6GA0	Crystal structure of a thermophilic O6-alkylguanine-DNA alkyltransferase-derived self-labeling protein-tag in covalent complex with SNAP-Vista Green 分子名称: 5-[(4-methylphenyl)methylcarbamoyl]-2-(6-oxidanyl-3-oxidanylidene-4~{H}-xanthen-9-yl)benzoic acid, Methylated-DNA--protein-cysteine methyltransferase, SULFATE ION 著者 Miggiano, R, Rossi, F, Rizzi, M. 登録日 2018-04-11 公開日 2018-05-09 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Crystal structure of a thermophilic O6-alkylguanine-DNA alkyltransferase-derived self-labeling protein-tag in covalent complex with a fluorescent probe. Biochem. Biophys. Res. Commun., 500, 2018
4O5W	O6-carboxymethylguanine in DNA forms a sequence context dependent wobble base pair structure with thymine 分子名称: 2'-(4-HYDROXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE, DNA (5'-D(*CP*GP*CP*(C6G)P*AP*AP*TP*TP*TP*GP*CP*G)-3'), MAGNESIUM ION, ... 著者 Zhang, F, Tsunoda, M, Suzuki, K, Kikuchi, Y, Wilkinson, O, Millington, C.L, Margison, G.P, Williams, D.M, Takenaka, A. 登録日 2013-12-20 公開日 2014-07-02 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 O(6)-Carboxymethylguanine in DNA forms a sequence context-dependent wobble base-pair structure with thymine Acta Crystallogr.,Sect.D, 70, 2014
4O5Z	O6-carboxymethylguanine in DNA forms a sequence context dependent wobble base pair structure with thymine 分子名称: BARIUM ION, DNA (5'-D(*CP*GP*CP*(C6G)P*AP*AP*TP*TP*TP*GP*CP*G)-3'), SODIUM ION 著者 Zhang, F, Tsunoda, M, Suzuki, K, Kikuchi, Y, Wilkinson, O, Millington, C.L, Margison, G.P, Williams, D.M, Takenaka, A. 登録日 2013-12-20 公開日 2014-07-02 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (1.75 Å) 主引用文献 O(6)-Carboxymethylguanine in DNA forms a sequence context-dependent wobble base-pair structure with thymine Acta Crystallogr.,Sect.D, 70, 2014
6QY3	Segment of the Cas1-Cas2-Csn2-DNA filament complex from the Type II-A CRISPR-Cas system 分子名称: CALCIUM ION, CRISPR-associated endonuclease Cas1, CRISPR-associated endoribonuclease Cas2, ... 著者 Wilkinson, M, Drabavicius, G, Silanskas, A, Gasiunas, G, Siksnys, V, Wigley, D.B. 登録日 2019-03-08 公開日 2019-05-08 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (9.1 Å) 主引用文献 Structure of the DNA-Bound Spacer Capture Complex of a Type II CRISPR-Cas System. Mol.Cell, 75, 2019
3U7G	Crystal structure of mPNKP catalytic fragment (D170A) bound to single-stranded DNA (TCCTAp) 分子名称: Bifunctional polynucleotide phosphatase/kinase, DNA, GLYCEROL, ... 著者 Coquelle, N, Havali, Z, Bernstein, N, Green, R, Glover, J.N.M. 登録日 2011-10-13 公開日 2011-12-14 最終更新日 2017-11-08 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Structural basis for the phosphatase activity of polynucleotide kinase/phosphatase on single- and double-stranded DNA substrates. Proc.Natl.Acad.Sci.USA, 108, 2011
3U7H	Crystal structure of mPNKP catalytic fragment (D170A) bound to single-stranded DNA (TCCTTp) 分子名称: Bifunctional polynucleotide phosphatase/kinase, DNA, GLYCEROL, ... 著者 Coquelle, N, Havali, Z, Bernstein, N, Green, R, Glover, J.N.M. 登録日 2011-10-13 公開日 2011-12-14 最終更新日 2017-11-08 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structural basis for the phosphatase activity of polynucleotide kinase/phosphatase on single- and double-stranded DNA substrates. Proc.Natl.Acad.Sci.USA, 108, 2011
4Q8E	Human DNA polymerase eta inserting dCMPNPP opposite a phenanthriplatin adducted G 分子名称: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]cytidine, 5'-D(*AP*GP*TP*GP*TP*GP*AP*G)-3', 5'-D(*CP*AP*TP*GP*CP*TP*CP*AP*CP*AP*CP*T)-3', ... 著者 Gregory, M.T, Yang, W. 登録日 2014-04-26 公開日 2014-07-02 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.549 Å) 主引用文献 Structural and mechanistic studies of polymerase eta bypass of phenanthriplatin DNA damage. Proc.Natl.Acad.Sci.USA, 111, 2014
3U7F	Crystal structure of mPNKP catalytic fragment (D170A) bound to single-stranded DNA (TCCTCp) 分子名称: Bifunctional polynucleotide phosphatase/kinase, DNA, GLYCEROL, ... 著者 Coquelle, N, Havali, Z, Bernstein, N, Green, R, Glover, J.N.M. 登録日 2011-10-13 公開日 2011-12-14 最終更新日 2017-11-08 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Structural basis for the phosphatase activity of polynucleotide kinase/phosphatase on single- and double-stranded DNA substrates. Proc.Natl.Acad.Sci.USA, 108, 2011
4Q8F	Human DNA polymerase eta extending primer immediately after a phenanthriplatin adducted G 分子名称: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]guanosine, 5'-D(*AP*GP*TP*GP*TP*GP*AP*C)-3', 5'-D(*CP*AP*TP*CP*GP*TP*CP*AP*CP*AP*CP*T)-3', ... 著者 Gregory, M.T, Yang, W. 登録日 2014-04-26 公開日 2014-07-02 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.797 Å) 主引用文献 Structural and mechanistic studies of polymerase eta bypass of phenanthriplatin DNA damage. Proc.Natl.Acad.Sci.USA, 111, 2014
2EX5	Group I Intron-encoded Homing Endonuclease I-CeuI Complexed With DNA 分子名称: CALCIUM ION, DNA endonuclease I-CeuI, I-CeuI DNA target site, ... 著者 Spiegel, P.C, Stoddard, B.L. 登録日 2005-11-07 公開日 2006-05-23 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 The structure of I-CeuI homing endonuclease: Evolving asymmetric DNA recognition from a symmetric protein scaffold. Structure, 14, 2006
4EJZ	Structure of MBOgg1 in complex with low affinity DNA ligand 分子名称: 3-Methyladenine DNA glycosylase, DNA (5'-D(*AP*GP*CP*GP*TP*CP*CP*AP*(3DR)P*GP*TP*CP*TP*AP*CP*C)-3'), DNA (5'-D(*T*GP*GP*TP*AP*GP*AP*CP*TP*TP*GP*GP*AP*CP*GP*C)-3') 著者 Jiang, T, Yu, H.J, Bi, L.J, Zhang, X.E, Yang, M.Z. 登録日 2012-04-08 公開日 2013-03-20 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (3.05 Å) 主引用文献 Crystal structures of MBOgg1 in complex with two abasic DNA ligands J.Struct.Biol., 181, 2013
2HAJ	Solution structure of the helicase-binding domain of Escherichia coli primase 分子名称: DNA primase 著者 Su, X.C, Loscha, K.V, Dixon, N.E, Otting, G. 登録日 2006-06-13 公開日 2006-10-17 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Monomeric solution structure of the helicase-binding domain of Escherichia coli DnaG primase Febs J., 273, 2006
235D	CRYSTAL STRUCTURE OF FOUR MORPHOLINO-DOXORUBICIN ANTICANCER DRUGS COMPLEXED WITH D(CGTACG) AND D(CGATCG): IMPLICATIONS IN DRUG-DNA CROSSLINK 分子名称: 3'-DESAMINO-3'-(2-METHOXY-4-MORPHOLINYL)-DOXORUBICIN, DNA (5'-D(*CP*GP*AP*TP*CP*G)-3') 著者 Gao, Y.-G, Wang, A.H.-J. 登録日 1995-06-22 公開日 1996-01-31 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Crystal structures of four morpholino-doxorubicin anticancer drugs complexed with d(CGTACG) and d(CGATCG): implications in drug-DNA crosslink. J.Biomol.Struct.Dyn., 13, 1995
234D	CRYSTAL STRUCTURE OF FOUR MORPHOLINO-DOXORUBICIN ANTICANCER DRUGS COMPLEXED WITH D(CGTACG) AND D(CGATCG): IMPLICATIONS IN DRUG-DNA CROSSLINK 分子名称: 3'-DESAMINO-3'-(2-METHOXY-4-MORPHOLINYL)-DOXORUBICIN, DNA (5'-D(*CP*GP*AP*TP*CP*G)-3') 著者 Gao, Y.-G, Wang, A.H.-J. 登録日 1995-06-22 公開日 1996-01-31 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Crystal structures of four morpholino-doxorubicin anticancer drugs complexed with d(CGTACG) and d(CGATCG): implications in drug-DNA crosslink. J.Biomol.Struct.Dyn., 13, 1995
8D2M	Covalent Schiff base complex of YedK C2A and abasic DNA 分子名称: Abasic site processing protein YedK, DNA (5'-D(*GP*TP*CP*(PED)P*GP*GP*A)-3') 著者 Eichman, B.F, Paulin, K.A. 登録日 2022-05-30 公開日 2023-04-12 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.821 Å) 主引用文献 The SOS response-associated peptidase (SRAP) domain of YedK catalyzes ring opening of abasic sites and reversal of its DNA-protein cross-link. J.Biol.Chem., 298, 2022
1T94	Crystal structure of the catalytic core of human DNA polymerase kappa 分子名称: polymerase (DNA directed) kappa 著者 Uljon, S.N, Johnson, R.E, Edwards, T.A, Prakash, S, Prakash, L, Aggarwal, A.K. 登録日 2004-05-14 公開日 2004-08-31 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Crystal structure of the catalytic core of human DNA polymerase kappa. STRUCTURE, 12, 2004
5F8A	Crystal structure of the ternary EcoRV-DNA-Lu complex with uncleaved DNA substrate. Lanthanide binding to EcoRV-DNA complex inhibits cleavage. 分子名称: 1,2-ETHANEDIOL, DNA (5'-D(*AP*AP*AP*GP*AP*TP*AP*TP*CP*TP*TP*T)-3'), LUTETIUM (III) ION, ... 著者 Sangani, S.S, Kehr, A.D, Sinha, K, Rule, G.S, Jen-Jacobson, L. 登録日 2015-12-09 公開日 2016-11-09 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.76 Å) 主引用文献 Metal Ion Binding at the Catalytic Site Induces Widely Distributed Changes in a Sequence Specific Protein-DNA Complex. Biochemistry, 55, 2016
215D	CRYSTAL STRUCTURE OF FOUR MORPHOLINO-DOXORUBICIN ANTICANCER DRUGS COMPLEXED WITH D(CGTACG) AND D(CGATCG): IMPLICATIONS IN DRUG-DNA CROSSLINK 分子名称: 3'-DESAMINO-3'-(2-METHOXY-4-MORPHOLINYL)-DOXORUBICIN, DNA (5'-D(*CP*GP*TP*AP*CP*G)-3') 著者 Gao, Y.-G, Wang, A.H.-J. 登録日 1995-06-22 公開日 1996-01-31 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Crystal structures of four morpholino-doxorubicin anticancer drugs complexed with d(CGTACG) and d(CGATCG): implications in drug-DNA crosslink. J.Biomol.Struct.Dyn., 13, 1995
236D	CRYSTAL STRUCTURE OF FOUR MORPHOLINO-DOXORUBICIN ANTICANCER DRUGS COMPLEXED WITH D(CGTACG) AND D(CGATCG): IMPLICATIONS IN DRUG-DNA CROSSLINK 分子名称: 3'-DESAMINO-3'-(3-CYANO-4-MORPHOLINYL)-DOXORUBICIN, DNA (5'-D(*CP*GP*AP*TP*CP*G)-3') 著者 Gao, Y.-G, Wang, A.H.-J. 登録日 1995-06-22 公開日 1996-01-31 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Crystal structures of four morpholino-doxorubicin anticancer drugs complexed with d(CGTACG) and d(CGATCG): implications in drug-DNA crosslink. J.Biomol.Struct.Dyn., 13, 1995
4EJY	Structure of MBOgg1 in complex with high affinity DNA ligand 分子名称: 3-Methyladenine DNA glycosylase, DNA (5'-D(*AP*GP*CP*GP*TP*CP*CP*AP*(3DR)P*GP*TP*CP*TP*AP*CP*C)-3'), DNA (5'-D(*T*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3'), ... 著者 Jiang, T, Yu, H.J, Bi, L.J, Zhang, X.E, Yang, M.Z. 登録日 2012-04-08 公開日 2013-03-20 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Crystal structures of MBOgg1 in complex with two abasic DNA ligands J.Struct.Biol., 181, 2013
1DGO	SOLUTION STRUCTURE OF A URACIL CONTAINING HAIRPIN DNA 分子名称: URACIL CONTAINING HAIRPIN DNA 著者 Ghosh, M, Kumar, N.V, Varshney, U, Chary, K.V.R. 登録日 1999-11-24 公開日 2000-05-03 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Structural basis for uracil DNA glycosylase interaction with uracil: NMR study. Nucleic Acids Res., 28, 2000

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