PDB: 47011 件ウェブページステータス検索Chemie searchBIRD

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6ROR	REP related 18-mer DNA 分子名称: REP related 18-mer DNA from C. hominis, STRONTIUM ION 著者 Kolenko, P, Svoboda, J, Schneider, B. 登録日 2019-05-13 公開日 2020-07-08 最終更新日 2024-05-15 実験手法 X-RAY DIFFRACTION (2.601 Å) 主引用文献 Structural variability of CG-rich DNA 18-mers accommodating double T-T mismatches. Acta Crystallogr D Struct Biol, 76, 2020
6ROS	REP related 18-mer DNA 分子名称: REP related 18-mer DNA from C. hominis, STRONTIUM ION 著者 Kolenko, P, Svoboda, J, Schneider, B. 登録日 2019-05-13 公開日 2020-07-08 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Structural variability of CG-rich DNA 18-mers accommodating double T-T mismatches. Acta Crystallogr D Struct Biol, 76, 2020
5CG9	NgTET1 in complex with 5mC DNA in space group P3221 分子名称: 1,2-ETHANEDIOL, 2-OXOGLUTARIC ACID, DNA (5'-D(*TP*GP*TP*CP*AP*GP*(5CM)P*GP*CP*AP*TP*GP*G)-3'), ... 著者 Hashimoto, H, Pais, J.E, Dai, N, Zhang, X, Zheng, Y, Cheng, X. 登録日 2015-07-09 公開日 2015-09-09 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.693 Å) 主引用文献 Structure of Naegleria Tet-like dioxygenase (NgTet1) in complexes with a reaction intermediate 5-hydroxymethylcytosine DNA. Nucleic Acids Res., 43, 2015
5CG8	NgTET1 in complex with 5hmC DNA 分子名称: 2-OXOGLUTARIC ACID, DNA (5'-D(*AP*GP*AP*AP*TP*TP*CP*CP*GP*TP*TP*CP*CP*A)-3'), DNA (5'-D(*TP*GP*GP*AP*AP*(5HC)P*GP*GP*AP*AP*TP*TP*CP*T)-3'), ... 著者 Hashimoto, H, Pais, J.E, Dai, N, Zhang, X, Zheng, Y, Cheng, X. 登録日 2015-07-09 公開日 2015-09-09 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.702 Å) 主引用文献 Structure of Naegleria Tet-like dioxygenase (NgTet1) in complexes with a reaction intermediate 5-hydroxymethylcytosine DNA. Nucleic Acids Res., 43, 2015
1QC1	CRYSTAL STRUCTURE OF THE SELF-FITTED B-DNA DECAMER D(CCGCCGGCGG) 分子名称: 5'-D(*CP*CP*GP*CP*CP*GP*GP*CP*GP*G)-3', MAGNESIUM ION 著者 Timsit, Y, Moras, D. 登録日 1999-05-14 公開日 1999-05-28 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 DNA self-fitting: the double helix directs the geometry of its supramolecular assembly EMBO J., 13, 1994
1WYW	Crystal Structure of SUMO1-conjugated thymine DNA glycosylase 分子名称: CHLORIDE ION, G/T mismatch-specific thymine DNA glycosylase, MAGNESIUM ION, ... 著者 Baba, D, Maita, N, Jee, J.G, Uchimura, Y, Saitoh, H, Sugasawa, K, Hanaoka, F, Tochio, H, Hiroaki, H, Shirakawa, M. 登録日 2005-02-17 公開日 2005-06-21 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Crystal structure of thymine DNA glycosylase conjugated to SUMO-1. Nature, 435, 2005
4P0P	Crystal structure of Human Mus81-Eme1 in complex with 5'-flap DNA, and Mg2+ 分子名称: Crossover junction endonuclease EME1, Crossover junction endonuclease MUS81, DNA GAATGTGTGTCTCAATC, ... 著者 Gwon, G.H, Baek, K, Cho, Y. 登録日 2014-02-22 公開日 2014-05-28 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Crystal structures of the structure-selective nuclease Mus81-Eme1 bound to flap DNA substrates. Embo J., 33, 2014
2BPG	STRUCTURES OF TERNARY COMPLEXES OF RAT DNA POLYMERASE BETA, A DNA TEMPLATE-PRIMER, AND DDCTP 分子名称: 2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE, DNA (5'-D(*CP*GP*GP*CP*GP*CP*C)-3'), DNA (5'-D(*GP*GP*GP*CP*GP*CP*CP*G)-3'), ... 著者 Pelletier, H, Sawaya, M.R, Kumar, A, Wilson, S.H, Kraut, J. 登録日 1994-05-19 公開日 1994-08-31 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (3.6 Å) 主引用文献 Structures of ternary complexes of rat DNA polymerase beta, a DNA template-primer, and ddCTP. Science, 264, 1994
8AG6	human MutSalpha (MSH2/MSH6) binding to DNA with a GT mismatch 分子名称: ADENOSINE-5'-DIPHOSPHATE, DNA (50-MER), DNA mismatch repair protein Msh2, ... 著者 Bruekner, S.R, Sixma, T.K. 登録日 2022-07-19 公開日 2023-01-25 最終更新日 2024-07-24 実験手法 ELECTRON MICROSCOPY (2.8 Å) 主引用文献 Unexpected moves: a conformational change in MutS alpha enables high-affinity DNA mismatch binding. Nucleic Acids Res., 51, 2023
6Q0C	MutY adenine glycosylase bound to DNA containing a transition state analog (1N) paired with undamaged dG 分子名称: 1,2-ETHANEDIOL, A/G-specific adenine glycosylase, CALCIUM ION, ... 著者 O'Shea Murray, V.L, Russelburg, L.P, Horvath, M.P, David, S.S. 登録日 2019-08-01 公開日 2019-08-28 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structural Basis for Finding OG Lesions and Avoiding Undamaged G by the DNA Glycosylase MutY. Acs Chem.Biol., 15, 2020
2BPF	STRUCTURES OF TERNARY COMPLEXES OF RAT DNA POLYMERASE BETA, A DNA TEMPLATE-PRIMER, AND DDCTP 分子名称: 2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE, DNA (5'-D(*CP*GP*GP*CP*GP*CP*C)-3'), DNA (5'-D(*GP*GP*GP*CP*GP*CP*CP*G)-3'), ... 著者 Pelletier, H, Sawaya, M.R, Kumar, A, Wilson, S.H, Kraut, J. 登録日 1994-05-19 公開日 1994-12-14 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Structures of ternary complexes of rat DNA polymerase beta, a DNA template-primer, and ddCTP. Science, 264, 1994
3K0S	Crystal structure of E.coli DNA mismatch repair protein MutS, D693N mutant, in complex with GT mismatched DNA 分子名称: 5'-D(*AP*GP*CP*TP*GP*CP*CP*AP*GP*GP*CP*AP*CP*CP*AP*GP*TP*GP*TP*CP*AP*GP*CP*GP*TP*CP*CP*TP*AP*T)-3', 5'-D(*AP*TP*AP*GP*GP*AP*CP*GP*CP*TP*GP*AP*C*AP*CP*T*GP*GP*TP*GP*CP*TP*TP*GP*GP*CP*AP*GP*CP*T)-3', ADENOSINE-5'-DIPHOSPHATE, ... 著者 Reumer, G.A, Winterwerp, H.H.K, Sixma, T.K. 登録日 2009-09-25 公開日 2010-02-16 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Magnesium coordination controls the molecular switch function of DNA mismatch repair protein MutS. J.Biol.Chem., 285, 2010
3DVO	SgrAI with cognate DNA and calcium bound 分子名称: CALCIUM ION, DNA (5'-D(*DGP*DAP*DGP*DTP*DCP*DCP*DAP*DCP*DCP*DGP*DGP*DTP*DGP*DGP*DAP*DCP*DTP*DC)-3'), SgraIR restriction enzyme 著者 Dunten, P.W, Horton, N.C, Little, E.J. 登録日 2008-07-18 公開日 2008-08-19 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (1.892 Å) 主引用文献 The structure of SgrAI bound to DNA; recognition of an 8 base pair target. Nucleic Acids Res., 36, 2008
1OE4	Xenopus SMUG1, an anti-mutator uracil-DNA Glycosylase 分子名称: 5'-D(*CP*CP*CP*GP*TP*GP*AP*GP*TP*CP*CP*G)-3', 5'-D(*CP*GP*GP*AP*CP*TP*3DR*AP*CP*GP*GP*G)-3', GLYCEROL, ... 著者 Wibley, J.E.A, Pearl, L.H. 登録日 2003-03-19 公開日 2003-07-11 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structure and Specificity of the Vertebrate Anti-Mutator Uracil-DNA Glycosylase Smug1 Mol.Cell, 11, 2003
2C2P	The crystal structure of mismatch specific uracil-DNA glycosylase (MUG) from Deinococcus radiodurans 分子名称: ACETATE ION, G/U MISMATCH-SPECIFIC DNA GLYCOSYLASE 著者 Moe, E, Leiros, I, Smalas, A.O, McSweeney, S. 登録日 2005-09-29 公開日 2005-10-18 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (1.75 Å) 主引用文献 The Crystal Structure of Mismatch Specific Uracil-DNA Glycosylase (Mug) from Deinococcus Radiodurans Reveals a Novel Catalytic Residue and Broad Substrate Specificity J.Biol.Chem., 281, 2006
6BUX	CRYSTAL STRUCTURE OF APOBEC3G CATALYTIC DOMAIN COMPLEX WITH SUBSTRATE SSDNA 分子名称: Apolipoprotein B mRNA editing enzyme catalytic subunit 3G catalytic domain, DNA (5'-D(*AP*AP*TP*CP*CP*CP*AP*AP*A)-3'), GLYCEROL, ... 著者 Maiti, A, Matsuo, H. 登録日 2017-12-11 公開日 2018-07-18 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (1.856 Å) 主引用文献 Crystal structure of the catalytic domain of HIV-1 restriction factor APOBEC3G in complex with ssDNA. Nat Commun, 9, 2018
2C2Q	The crystal structure of mismatch specific uracil-DNA glycosylase (MUG) from Deinococcus radiodurans. Inactive mutant Asp93Ala. 分子名称: ACETATE ION, G/U MISMATCH-SPECIFIC DNA GLYCOSYLASE 著者 Moe, E, Leiros, I, Smalas, A.O, McSweeney, S. 登録日 2005-09-29 公開日 2005-10-18 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 The Crystal Structure of Mismatch Specific Uracil-DNA Glycosylase (Mug) from Deinococcus Radiodurans Reveals a Novel Catalytic Residue and Broad Substrate Specificity J.Biol.Chem., 281, 2006
4K4H	Ternary crystal structures of a human DNA POLYMERASE LAMBDA IN COMPLEX WITH DNA AND (-)3TC-TP. 分子名称: ACETATE ION, CALCIUM ION, DNA (5'-D(*CP*AP*GP*TP*AP*C)-3'), ... 著者 Vyas, R, Suo, Z. 登録日 2013-04-12 公開日 2014-07-16 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Structural basis for the binding and incorporation of nucleotide analogs with L-stereochemistry by human DNA polymerase lambda. Proc.Natl.Acad.Sci.USA, 111, 2014
6ROU	REP related 18-mer DNA 分子名称: REP related 18-mer DNA from H. parasuis, STRONTIUM ION 著者 Kolenko, P, Svoboda, J, Schneider, B. 登録日 2019-05-13 公開日 2020-07-08 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (2.902 Å) 主引用文献 Structural variability of CG-rich DNA 18-mers accommodating double T-T mismatches. Acta Crystallogr D Struct Biol, 76, 2020
4K4G	Ternary crystal structures of human DNA POLYMERASE LAMBDA IN COMPLEX WITH DNA AND L-DCTP. 分子名称: 4-amino-1-{2-deoxy-5-O-[(R)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}phosphoryl]-beta-L-erythro-pentofuranosyl}pyrimidin-2(1H)-one, ACETATE ION, CACODYLATE ION, ... 著者 Vyas, R, Suo, Z. 登録日 2013-04-12 公開日 2014-07-16 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 Structural basis for the binding and incorporation of nucleotide analogs with L-stereochemistry by human DNA polymerase lambda. Proc.Natl.Acad.Sci.USA, 111, 2014
4K4I	Ternary crystal structures of a human DNA POLYMERASE LAMBDA IN COMPLEX WITH DNA AND (-)FTC-TP. 分子名称: ACETATE ION, CACODYLATE ION, CALCIUM ION, ... 著者 Vyas, R, Suo, Z. 登録日 2013-04-12 公開日 2014-07-16 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.25 Å) 主引用文献 Structural basis for the binding and incorporation of nucleotide analogs with L-stereochemistry by human DNA polymerase lambda. Proc.Natl.Acad.Sci.USA, 111, 2014
3E45	Q138F HincII bound to Noncognate DNA (GTGCAC) and Ca2+ 分子名称: 5'-D(*DGP*DCP*DCP*DGP*DGP*DTP*DGP*DCP*DAP*DCP*DCP*DGP*DGP*DC)-3', CALCIUM ION, SODIUM ION, ... 著者 Horton, N.C, Babic, A.C, Little, E.J, Manohar, V.M. 登録日 2008-08-08 公開日 2008-08-26 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.78 Å) 主引用文献 DNA distortion and specificity in a sequence-specific endonuclease. J.Mol.Biol., 383, 2008
1FJA	NMR STUDY OF DEOXYRIBONUCLEIC ACID COMPLEXED WITH ACTINOMYCIN D 分子名称: ACTINOMYCIN D, DNA (5'-D(*AP*AP*GP*CP*GP*CP*TP*T)-3') 著者 Chen, H, Liu, X, Patel, D.J. 登録日 1995-12-15 公開日 1996-06-10 最終更新日 2024-07-10 実験手法 SOLUTION NMR 主引用文献 DNA Bending and Unwinding Associated with Actinomycin D Antibiotics Bound to Partially Overlapping Sites on DNA. J.Mol.Biol., 258, 1996
1OE5	Xenopus SMUG1, an anti-mutator uracil-DNA Glycosylase 分子名称: 2'-DEOXYURIDINE, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, 5'-D(*CP*3DRP*GP*GP*AP*CP*TP*3DRP*AP*CP*GP*GP*GP)-3', ... 著者 Wibley, J.E.A, Pearl, L.H. 登録日 2003-03-19 公開日 2003-07-11 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Structure and Specificity of the Vertebrate Anti-Mutator Uracil-DNA Glycosylase Smug1 Mol.Cell, 11, 2003
4K8Z	KOD Polymerase in binary complex with dsDNA 分子名称: 1,2-ETHANEDIOL, COBALT HEXAMMINE(III), DNA (5'-D(*AP*AP*AP*TP*TP*CP*GP*CP*AP*GP*TP*TP*CP*GP*CP*G)-3'), ... 著者 Bergen, K, Betz, K, Welte, W, Diederichs, K, Marx, A. 登録日 2013-04-19 公開日 2013-06-26 最終更新日 2024-10-30 実験手法 X-RAY DIFFRACTION (2.29 Å) 主引用文献 Structures of KOD and 9N DNA Polymerases Complexed with Primer Template Duplex Chembiochem, 14, 2013

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