PDB: 45817 件ウェブページステータス検索Chemie searchBIRD

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3UXP	Co-crystal Structure of Rat DNA polymerase beta Mutator I260Q: Enzyme-DNA-ddTTP 分子名称: 2',3'-DIDEOXY-THYMIDINE-5'-TRIPHOSPHATE, DNA 5'-D(P*AP*CP*TP*CP*AP*CP*AP*TP*A)-3', DNA 5'-D(P*AP*TP*GP*TP*GP*AP*G)-3', ... 著者 Gridley, C.L, Jaeger, J. 登録日 2011-12-05 公開日 2012-12-05 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.723 Å) 主引用文献 Structural Changes in the Hydrophobic Hinge Region Adversely Affect the Activity and Fidelity of the I260Q Mutator DNA Polymerase beta. Biochemistry, 52, 2013
2BPF	STRUCTURES OF TERNARY COMPLEXES OF RAT DNA POLYMERASE BETA, A DNA TEMPLATE-PRIMER, AND DDCTP 分子名称: 2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE, DNA (5'-D(*CP*GP*GP*CP*GP*CP*C)-3'), DNA (5'-D(*GP*GP*GP*CP*GP*CP*CP*G)-3'), ... 著者 Pelletier, H, Sawaya, M.R, Kumar, A, Wilson, S.H, Kraut, J. 登録日 1994-05-19 公開日 1994-12-14 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Structures of ternary complexes of rat DNA polymerase beta, a DNA template-primer, and ddCTP. Science, 264, 1994
4K4G	Ternary crystal structures of human DNA POLYMERASE LAMBDA IN COMPLEX WITH DNA AND L-DCTP. 分子名称: 4-amino-1-{2-deoxy-5-O-[(R)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}phosphoryl]-beta-L-erythro-pentofuranosyl}pyrimidin-2(1H)-one, ACETATE ION, CACODYLATE ION, ... 著者 Vyas, R, Suo, Z. 登録日 2013-04-12 公開日 2014-07-16 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 Structural basis for the binding and incorporation of nucleotide analogs with L-stereochemistry by human DNA polymerase lambda. Proc.Natl.Acad.Sci.USA, 111, 2014
4K4I	Ternary crystal structures of a human DNA POLYMERASE LAMBDA IN COMPLEX WITH DNA AND (-)FTC-TP. 分子名称: ACETATE ION, CACODYLATE ION, CALCIUM ION, ... 著者 Vyas, R, Suo, Z. 登録日 2013-04-12 公開日 2014-07-16 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.25 Å) 主引用文献 Structural basis for the binding and incorporation of nucleotide analogs with L-stereochemistry by human DNA polymerase lambda. Proc.Natl.Acad.Sci.USA, 111, 2014
6UI2	Structure of human DNA polymerase eta complexed with N7MG in the template base paired with incoming non-hydrolyzable CTP 分子名称: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]cytidine, DNA (5'-D(*AP*GP*CP*GP*TP*CP*AP*T)-3'), DNA (5'-D(*CP*AP*TP*(FMG)P*AP*TP*GP*AP*CP*GP*CP*T)-3'), ... 著者 Koag, M.C, Lee, S. 登録日 2019-09-30 公開日 2020-01-15 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2.35 Å) 主引用文献 Bypass of the Major Alkylative DNA Lesion by Human DNA Polymerase eta. Molecules, 24, 2019
2R9L	Polymerase Domain from Mycobacterium tuberculosis Ligase D in complex with DNA 分子名称: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, DNA (5'-D(*DGP*DCP*DCP*DGP*DCP*DAP*DAP*DCP*DGP*DCP*DA)-3'), ... 著者 Brissett, N.C, Fox, G.C, Pitcher, R.S, Doherty, A.J. 登録日 2007-09-13 公開日 2008-01-08 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Structure of a NHEJ polymerase-mediated DNA synaptic complex Science, 318, 2007
4K4H	Ternary crystal structures of a human DNA POLYMERASE LAMBDA IN COMPLEX WITH DNA AND (-)3TC-TP. 分子名称: ACETATE ION, CALCIUM ION, DNA (5'-D(*CP*AP*GP*TP*AP*C)-3'), ... 著者 Vyas, R, Suo, Z. 登録日 2013-04-12 公開日 2014-07-16 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Structural basis for the binding and incorporation of nucleotide analogs with L-stereochemistry by human DNA polymerase lambda. Proc.Natl.Acad.Sci.USA, 111, 2014
4LEY	Structure of mouse cGAS bound to 18 bp DNA 分子名称: 18 bp dsDNA, Cyclic GMP-AMP synthase, ZINC ION 著者 Li, P. 登録日 2013-06-26 公開日 2013-12-25 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Cyclic GMP-AMP Synthase Is Activated by Double-Stranded DNA-Induced Oligomerization. Immunity, 39, 2013
3WPD	Crystal structure of horse TLR9 in complex with inhibitory DNA4084 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, DNA (5'-D(*CP*CP*TP*GP*GP*AP*TP*GP*GP*G)-3'), ... 著者 Ohto, U, Tanji, H, Shimizu, T. 登録日 2014-01-11 公開日 2015-02-11 最終更新日 2020-07-29 実験手法 X-RAY DIFFRACTION (2.75 Å) 主引用文献 Structural basis of CpG and inhibitory DNA recognition by Toll-like receptor 9 Nature, 520, 2015
2IS2	Crystal structure of UvrD-DNA binary complex 分子名称: 33-MER, DNA helicase II, FORMIC ACID, ... 著者 Yang, W, Lee, J.Y. 登録日 2006-10-16 公開日 2007-01-09 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 UvrD helicase unwinds DNA one base pair at a time by a two-part power stroke. Cell(Cambridge,Mass.), 127, 2006
2IS1	Crystal structure of UvrD-DNA-SO4 complex 分子名称: 5'-D(*CP*GP*AP*GP*CP*AP*CP*TP*GP*C)-3', 5'-D(*GP*CP*AP*GP*TP*GP*CP*TP*CP*GP*TP*TP*TP*TP*TP*TP*T)-3', DNA helicase II, ... 著者 Yang, W, Lee, J.Y. 登録日 2006-10-16 公開日 2007-01-09 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 UvrD helicase unwinds DNA one base pair at a time by a two-part power stroke. Cell(Cambridge,Mass.), 127, 2006
3WPG	Crystal structure of mouse TLR9 in complex with inhibitory DNA4084 (form 1) 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, DNA (5'-D(*CP*CP*TP*GP*GP*AP*TP*GP*GP*GP*AP*A)-3'), SULFATE ION, ... 著者 Ohto, U, Shimizu, T. 登録日 2014-01-11 公開日 2015-02-11 最終更新日 2020-07-29 実験手法 X-RAY DIFFRACTION (2.246 Å) 主引用文献 Structural basis of CpG and inhibitory DNA recognition by Toll-like receptor 9 Nature, 520, 2015
1F69	CRYSTAL STRUCTURE OF THE B-DNA HEXAMER GGCGCC WITH COBALT HEXAMINE 分子名称: COBALT HEXAMMINE(III), DNA (5'-D(*GP*GP*CP*GP*CP*C)-3'), MAGNESIUM ION 著者 Vargason, J.M, Eichman, B.F, Ho, P.S. 登録日 2000-06-20 公開日 2000-08-28 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 The extended and eccentric E-DNA structure induced by cytosine methylation or bromination. Nat.Struct.Biol., 7, 2000
2IS6	Crystal structure of UvrD-DNA-ADPMgF3 ternary complex 分子名称: 5'-D(*CP*GP*AP*GP*CP*AP*CP*TP*GP*CP*AP*GP*TP*GP*CP*TP*CP*GP*TP*TP*GP*TP*TP*AP*T)-3', ADENOSINE-5'-DIPHOSPHATE, DNA helicase II, ... 著者 Yang, W, Lee, J.Y. 登録日 2006-10-16 公開日 2007-01-09 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 UvrD helicase unwinds DNA one base pair at a time by a two-part power stroke. Cell(Cambridge,Mass.), 127, 2006
3EYI	The crystal structure of the second Z-DNA binding domain of human DAI (ZBP1) in complex with Z-DNA 分子名称: 5'-TCGCGCG-3', Z-DNA-binding protein 1 著者 Ha, S.C, Kim, K.K. 登録日 2008-10-21 公開日 2009-01-13 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (1.45 Å) 主引用文献 The crystal structure of the second Z-DNA binding domain of human DAI (ZBP1) in complex with Z-DNA reveals an unusual binding mode to Z-DNA. Proc.Natl.Acad.Sci.USA, 105, 2008
1OUP	Crystal structure of the periplasmic endonuclease Vvn complexed with octamer double stranded DNA 分子名称: 5'-D(*GP*CP*GP*AP*TP*C)-3', 5'-D(*GP*CP*GP*AP*TP*CP*GP*C)-3', 5'-D(P*GP*C)-3', ... 著者 Yuan, H.S, Li, C.-L. 登録日 2003-03-25 公開日 2003-08-05 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 DNA binding and cleavage by the periplasmic nuclease Vvn: a novel structure with a known active site. Embo J., 22, 2003
3WPH	Crystal structure of mouse TLR9 in complex with inhibitory DNA4084 (form 2) 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, DNA (5'-D(*CP*CP*TP*GP*GP*AP*TP*GP*GP*GP*AP*A)-3'), SULFATE ION, ... 著者 Ohto, U, Shimizu, T. 登録日 2014-01-11 公開日 2015-02-11 最終更新日 2020-07-29 実験手法 X-RAY DIFFRACTION (2.327 Å) 主引用文献 Structural basis of CpG and inhibitory DNA recognition by Toll-like receptor 9 Nature, 520, 2015
2IS4	Crystal structure of UvrD-DNA-ADPNP ternary complex 分子名称: 25-MER, DNA helicase II, MAGNESIUM ION, ... 著者 Yang, W, Lee, J.Y. 登録日 2006-10-16 公開日 2007-01-09 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 UvrD helicase unwinds DNA one base pair at a time by a two-part power stroke. Cell(Cambridge,Mass.), 127, 2006
6S2E	Cryo-EM structure of Ctf18-1-8 in complex with the catalytic domain of DNA polymerase epsilon 分子名称: Chromosome transmission fidelity protein 18, Chromosome transmission fidelity protein 8, DNA polymerase epsilon catalytic subunit A, ... 著者 Grabarczyk, D.B, Song, B. 登録日 2019-06-20 公開日 2020-07-08 最終更新日 2024-07-10 実験手法 ELECTRON MICROSCOPY (4.2 Å) 主引用文献 Ctf18-RFC and DNA Pol ε form a stable leading strand polymerase/clamp loader complex required for normal and perturbed DNA replication. Nucleic Acids Res., 48, 2020
4IRB	Crystal Structure of Vaccinia Virus Uracil DNA Glycosylase Mutant del171-172D4 分子名称: CHLORIDE ION, GLYCEROL, SULFATE ION, ... 著者 Schormann, N, Zhukovskaya, N, Sartmatova, D, Nuth, M, Ricciardi, R.P, Chattopadhyay, D. 登録日 2013-01-14 公開日 2014-02-26 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Mutations at the dimer interface affect both function and structure of the Vaccinia virus uracil DNA glycosylase To be Published
8A5Q	Structure of Arp4-Ies4-N-actin-Arp8-Ino80HSA subcomplex (A-module) of Chaetomium thermophilum INO80 on straight DNA 分子名称: ADENOSINE-5'-TRIPHOSPHATE, Actin, Actin related protein 4 (Arp4), ... 著者 Kunert, F, Metzner, F.J, Eustermann, S, Jung, J, Woike, S, Schall, K, Kostrewa, D, Hopfner, K.P. 登録日 2022-06-15 公開日 2022-12-14 最終更新日 2024-07-24 実験手法 ELECTRON MICROSCOPY (3.3 Å) 主引用文献 Structural mechanism of extranucleosomal DNA readout by the INO80 complex. Sci Adv, 8, 2022
8A5P	Structure of Arp4-Ies4-N-actin-Arp8-Ino80HSA subcomplex (A-module) of Chaetomium thermophilum INO80 on curved DNA 分子名称: ADENOSINE-5'-TRIPHOSPHATE, Actin, Actin related protein 4 (Arp4), ... 著者 Kunert, F, Metzner, F.J, Eustermann, S, Jung, J, Woike, S, Schall, K, Kostrewa, D, Hopfner, K.P. 登録日 2022-06-15 公開日 2022-12-14 最終更新日 2024-07-24 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Structural mechanism of extranucleosomal DNA readout by the INO80 complex. Sci Adv, 8, 2022
4K8Z	KOD Polymerase in binary complex with dsDNA 分子名称: 1,2-ETHANEDIOL, COBALT HEXAMMINE(III), DNA (5'-D(*AP*AP*AP*TP*TP*CP*GP*CP*AP*GP*TP*TP*CP*GP*CP*G)-3'), ... 著者 Bergen, K, Betz, K, Welte, W, Diederichs, K, Marx, A. 登録日 2013-04-19 公開日 2013-06-26 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.29 Å) 主引用文献 Structures of KOD and 9N DNA Polymerases Complexed with Primer Template Duplex Chembiochem, 14, 2013
227D	A CRYSTALLOGRAPHIC AND SPECTROSCOPIC STUDY OF THE COMPLEX BETWEEN D(CGCGAATTCGCG)2 AND 2,5-BIS(4-GUANYLPHENYL)FURAN, AN ANALOGUE OF BERENIL. STRUCTURAL ORIGINS OF ENHANCED DNA-BINDING AFFINITY 分子名称: 2,5-BIS(4-GUANYLPHENYL)FURAN, DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3') 著者 Laughton, C.A, Tanious, F, Nunn, C.M, Boykin, D.W, Wilson, W.D, Neidle, S. 登録日 1995-08-08 公開日 1995-11-11 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 A crystallographic and spectroscopic study of the complex between d(CGCGAATTCGCG)2 and 2,5-bis(4-guanylphenyl)furan, an analogue of berenil. Structural origins of enhanced DNA-binding affinity. Biochemistry, 35, 1996
8EAK	SsoMCM hexamer bound to Mg/ADP-BeFx and 46-mer DNA strand. Class 2 分子名称: 46-mer DNA, MAGNESIUM ION, Minichromosome maintenance protein MCM, ... 著者 Meagher, M, Myasnikov, A, Enemark, E.J. 登録日 2022-08-29 公開日 2022-12-14 最終更新日 2024-06-19 実験手法 ELECTRON MICROSCOPY (2.67 Å) 主引用文献 Two Distinct Modes of DNA Binding by an MCM Helicase Enable DNA Translocation. Int J Mol Sci, 23, 2022

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